MS000300 (gene) Bitter gourd (TR) v1

Overview


Name	MS000300
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold44: 739495 .. 739821 (+)
RNA-Seq Expression	MS000300
Synteny	MS000300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTATCTCTGCTGCATTTCAATCTCCATCTGAGAACCGTGGTTTCGATAGATCCCTTTGGCTGCCATCACAAAATGGAGTTTTCTCTGTCAAATCTATGAAATTCAACCTTGCTGTCTCCTCTCAAGGCATATATACAGGTTTCTTTACCAATTTTTGGTACTTGCTTCTGCCCAAAAAATGTAAATTCCTCATACTCAATAGACAAGAAAAGCTTCAACATAGGTATCATTTTCTTTGTTGCAATCCAAATTGGTGTGTATTATGGCAGTGCTCTCGGGAATATTTGGACCATCTTTTTCTCCAATGTGCTTACACTGCCAAATTT

mRNA sequence

AGTATCTCTGCTGCATTTCAATCTCCATCTGAGAACCGTGGTTTCGATAGATCCCTTTGGCTGCCATCACAAAATGGAGTTTTCTCTGTCAAATCTATGAAATTCAACCTTGCTGTCTCCTCTCAAGGCATATATACAGGTTTCTTTACCAATTTTTGGTACTTGCTTCTGCCCAAAAAATGTAAATTCCTCATACTCAATAGACAAGAAAAGCTTCAACATAGGTATCATTTTCTTTGTTGCAATCCAAATTGGTGTGTATTATGGCAGTGCTCTCGGGAATATTTGGACCATCTTTTTCTCCAATGTGCTTACACTGCCAAATTT

Coding sequence (CDS)

AGTATCTCTGCTGCATTTCAATCTCCATCTGAGAACCGTGGTTTCGATAGATCCCTTTGGCTGCCATCACAAAATGGAGTTTTCTCTGTCAAATCTATGAAATTCAACCTTGCTGTCTCCTCTCAAGGCATATATACAGGTTTCTTTACCAATTTTTGGTACTTGCTTCTGCCCAAAAAATGTAAATTCCTCATACTCAATAGACAAGAAAAGCTTCAACATAGGTATCATTTTCTTTGTTGCAATCCAAATTGGTGTGTATTATGGCAGTGCTCTCGGGAATATTTGGACCATCTTTTTCTCCAATGTGCTTACACTGCCAAATTT

Protein sequence

SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLILNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYTAKF

Homology

[Close]

BLAST of MS000300 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  
Sbjct: 268 NIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEF 327

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYS 383

[Close]

BLAST of MS000300 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  
Sbjct: 225 NIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEF 284

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYS 340

[Close]

BLAST of MS000300 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1    SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLL 60
            +I A+  +P  NRG  + LW  + N +F   S+K  +A   +S    +   +   W +  
Sbjct: 925  NIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEF 984

Query: 61   PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
            PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYS 1040

[Close]

BLAST of MS000300 vs. NCBI nr
Match: KAA0067274.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYL 60
           SI  +      NRG  + LW PS + V+SV S K +LA     I     +     + W  
Sbjct: 295 SIKMSLPQIHSNRGISKPLWKPSDSNVYSVASAK-DLAFKETSIPRETNWEKELKHLWRS 354

Query: 61  LLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYTAK 110
            +P+KCKF I       LN  + +Q R   +C NPNWC+  + S E ++HLF+ C    +
Sbjct: 355 HIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMCLNPNWCISCRSSNEDMNHLFILCPTAHR 414

[Close]

BLAST of MS000300 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 36/116 (31.03%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  +RG  + LW  + N +F   S+K +L   + S    +   +   W +  
Sbjct: 723 NIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDF 782

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYS 838

[Close]

BLAST of MS000300 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.7e-10
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  
Sbjct: 268 NIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEF 327

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYS 383

[Close]

BLAST of MS000300 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.7e-10
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  
Sbjct: 225 NIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPANFHPNLYKTLWKVEF 284

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYS 340

[Close]

BLAST of MS000300 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1    SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLL 60
            +I A+  +P  NRG  + LW  + N +F   S+K  +A   +S    +   +   W +  
Sbjct: 925  NIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEF 984

Query: 61   PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
            PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYS 1040

[Close]

BLAST of MS000300 vs. ExPASy TrEMBL
Match: A0A5A7VIU9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00940 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 41/121 (33.88%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYL 60
           SI  +      NRG  + LW PS + V+SV S K +LA     I     +     + W  
Sbjct: 295 SIKMSLPQIHSNRGISKPLWKPSDSNVYSVASAK-DLAFKETSIPRETNWEKELKHLWRS 354

Query: 61  LLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYTAK 110
            +P+KCKF I       LN  + +Q R   +C NPNWC+  + S E ++HLF+ C    +
Sbjct: 355 HIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMCLNPNWCISCRSSNEDMNHLFILCPTAHR 414

[Close]

BLAST of MS000300 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 36/116 (31.03%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 1   SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLL 60
           +I A+  +P  +RG  + LW  + N +F   S+K +L   + S    +   +   W +  
Sbjct: 817 NIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDF 876

Query: 61  PKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYT 107
           PKKCKF I       +N  ++LQ R      +PNWC +   S+E ++HLF+ C Y+
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYS 932

The following BLAST results are available for this feature:

BLAST of MS000300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044451.1	1.6e-09	32.76	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	1.6e-09	32.76	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	2.7e-09	31.90	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0067274.1	3.5e-09	33.88	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	2.3e-08	31.03	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MS000300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSA7	7.7e-10	32.76	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	7.7e-10	32.76	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	1.3e-09	31.90	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VIU9	1.7e-09	33.88	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	1.1e-08	31.03	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MS000300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000300.1	MS000300.1	mRNA