MS000273 (gene) Bitter gourd (TR) v1

Overview
NameMS000273
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger CCCH domain-containing protein 54
Locationscaffold44: 490409 .. 491059 (+)
RNA-Seq ExpressionMS000273
SyntenyMS000273
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAAGGGTTTTTTCCCGGCATAAATAATGCCGTTTTCGACCATGATTTTTCCGGCTGCCACCAGCTGATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCGAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATATGCGAGCTGTTACAG

mRNA sequence

ATGTTTCAAGGGTTTTTTCCCGGCATAAATAATGCCGTTTTCGACCATGATTTTTCCGGCTGCCACCAGCTGATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCGAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATATGCGAGCTGTTACAG

Coding sequence (CDS)

ATGTTTCAAGGGTTTTTTCCCGGCATAAATAATGCCGTTTTCGACCATGATTTTTCCGGCTGCCACCAGCTGATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCGAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATATGCGAGCTGTTACAG

Protein sequence

MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ
Homology
BLAST of MS000273 vs. NCBI nr
Match: XP_022141093.1 (zinc finger CCCH domain-containing protein 54 isoform X1 [Momordica charantia])

HSP 1 Score: 469.5 bits (1207), Expect = 1.5e-128
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE 60
           MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE
Sbjct: 2   MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE 61

Query: 61  CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC 120
           CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC
Sbjct: 62  CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC 121

Query: 121 NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL 180
           NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL
Sbjct: 122 NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL 181

Query: 181 KGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
           KGLTVREIRERKNDRNFGWEVSDSDLPHIGWI ELLQ
Sbjct: 182 KGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ 218

BLAST of MS000273 vs. NCBI nr
Match: XP_022141094.1 (zinc finger CCCH domain-containing protein 54 isoform X2 [Momordica charantia])

HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0

Query: 25  MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 84
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60

Query: 85  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 144
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120

Query: 145 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 204
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180

Query: 205 DLPHIGWICELLQ 218
           DLPHIGWI ELLQ
Sbjct: 181 DLPHIGWIRELLQ 193

BLAST of MS000273 vs. NCBI nr
Match: XP_038878131.1 (zinc finger CCCH domain-containing protein 54 [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-81
Identity = 151/218 (69.27%), Postives = 174/218 (79.82%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE 60
           MFQGF  GIN+ V+ H+FS     + +++D  A+F SDEFRM+AYKIQRCPR RSHDWTE
Sbjct: 1   MFQGFVFGIND-VYGHEFSAVS--VPEIDD-TAMFSSDEFRMYAYKIQRCPRNRSHDWTE 60

Query: 61  CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC 120
           CPYAHRGEKAQRRD RRFNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPARYRTRAC
Sbjct: 61  CPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRAC 120

Query: 121 NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNI-VNG 180
           NAGRFCQRKVCFFAH+P++LR ETKQKF+FNAHR RV V  VE+P E K D  S I V G
Sbjct: 121 NAGRFCQRKVCFFAHSPKELRPETKQKFNFNAHRQRVAVADVESPSEEKFDGASEIPVRG 180

Query: 181 LKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
             G        R+  R+FG EVS+ DLPH+ WI ELLQ
Sbjct: 181 TSG-------GREKQRSFGLEVSELDLPHVEWISELLQ 207

BLAST of MS000273 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044676.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa] >TYK16906.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 6.9e-81
Identity = 150/224 (66.96%), Postives = 175/224 (78.12%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCH-------QLMEQVEDAAAVFGSDEFRMFAYKIQRCPRT 60
           MFQGF  GIN+ V+ H+FS           L E+V+D  AVF +DEFRM++YKIQRCPR 
Sbjct: 1   MFQGFVFGIND-VYGHEFSAVSLPEVTVGNLTEKVDD-TAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPA
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDV 180
           RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK KF+ NA R RV V AVE+P E KND +
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
             I     G        RKN+R+FG++VS+ +LPHI WI ELL+
Sbjct: 181 LEIPARENG------GGRKNERSFGFDVSELELPHIEWISELLK 216

BLAST of MS000273 vs. NCBI nr
Match: KGN53171.2 (hypothetical protein Csa_015342 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 1.6e-77
Identity = 144/221 (65.16%), Postives = 172/221 (77.83%), Query Frame = 0

Query: 4   GFFPGINNAVFDHDFS-------GCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSH 63
           GF  GIN+ V+ H+FS           L E+ +D  AVF SDEFRM++YKIQRCPR RSH
Sbjct: 47  GFVFGIND-VYGHEFSVVSLPELTVGNLTEKTDD-TAVFSSDEFRMYSYKIQRCPRNRSH 106

Query: 64  DWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYR 123
           DWTECPYAHRGEKAQRRD R+FNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPARYR
Sbjct: 107 DWTECPYAHRGEKAQRRDPRQFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYR 166

Query: 124 TRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNI 183
           TRACNAGRFCQRKVCFFAH+PE+LR ETKQK  F+AH+ RV V A+E+P E KND +  I
Sbjct: 167 TRACNAGRFCQRKVCFFAHSPEELRPETKQKSSFSAHQQRVAVDAIESPPEEKNDGILEI 226

Query: 184 VNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
              + G        RKN+R+FG +V++ +LPHI WI ELL+
Sbjct: 227 PARVSG------SGRKNERSFGLDVTELELPHIEWISELLK 259

BLAST of MS000273 vs. ExPASy Swiss-Prot
Match: O65036 (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=TZF6 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.2e-57
Identity = 114/201 (56.72%), Postives = 129/201 (64.18%), Query Frame = 0

Query: 33  AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 92
           A++GSDEFRM+AYKI+RCPRTRSHDWTECPYAHRGEKA RRD RR+ Y AVACPAFRNG 
Sbjct: 46  AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGA 105

Query: 93  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR-SETKQKFHFN 152
           C RGD CE+AHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH PEQLR SE K +  + 
Sbjct: 106 CHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCRYA 165

Query: 153 AHRTRV----------------PVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDR 212
               R                       +P+ S  DD+ +  N  K L     R    D 
Sbjct: 166 YRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDS--NEEKVLLKCWSRMSIVDD 225

Query: 213 NFGWEVSDSDLPHIGWICELL 217
           ++     D DL H  WI EL+
Sbjct: 226 HYEPSDLDLDLSHFDWISELV 244

BLAST of MS000273 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 79/124 (63.71%), Postives = 94/124 (75.81%), Query Frame = 0

Query: 20  GCHQLMEQVEDAAAV--FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRR 79
           G  +  E    AAAV  +  DEFRM+ +K++RC R RSHDWTECP+AH GEKA+RRD R+
Sbjct: 55  GADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRK 114

Query: 80  FNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTP 139
           ++YS  ACP FR G C RGD CEYAHGVFE WLHPARYRT+ C  G  C+R+VCFFAHTP
Sbjct: 115 YHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTP 174

Query: 140 EQLR 142
           +QLR
Sbjct: 175 DQLR 178

BLAST of MS000273 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.4e-44
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 26  EQVEDAAAV------FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFN 85
           E  E+AAAV      +  DEFRM+ +K++RC R RSHDWTECP+AH GEKA+RRD RR+ 
Sbjct: 58  EDEEEAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYC 117

Query: 86  YSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQ 142
           YS  ACP FR G C RGD CE+AHGVFE WLHPARYRT+ C  G  C+R+VCFFAHTP+Q
Sbjct: 118 YSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQ 177

BLAST of MS000273 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-42
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 35  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 94
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 95  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

BLAST of MS000273 vs. ExPASy Swiss-Prot
Match: Q9ZWA1 (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=TZF4 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-42
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 30  DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAF- 89
           D+   + SD FRMF +KI+RC R+RSHDWT+CP+AH GEKA+RRD RRF YS   CP F 
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 90  RNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           R G+C RGD CE+AHGVFE WLHP RYRT AC  G+ C+RKVCFFAH+P QLR
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

BLAST of MS000273 vs. ExPASy TrEMBL
Match: A0A6J1CJI1 (zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 7.3e-129
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE 60
           MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE
Sbjct: 2   MFQGFFPGINNAVFDHDFSGCHQLMEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTE 61

Query: 61  CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC 120
           CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC
Sbjct: 62  CPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRAC 121

Query: 121 NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL 180
           NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL
Sbjct: 122 NAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGL 181

Query: 181 KGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
           KGLTVREIRERKNDRNFGWEVSDSDLPHIGWI ELLQ
Sbjct: 182 KGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ 218

BLAST of MS000273 vs. ExPASy TrEMBL
Match: A0A6J1CHL2 (zinc finger CCCH domain-containing protein 54 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.6e-113
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0

Query: 25  MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 84
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60

Query: 85  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 144
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120

Query: 145 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 204
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180

Query: 205 DLPHIGWICELLQ 218
           DLPHIGWI ELLQ
Sbjct: 181 DLPHIGWIRELLQ 193

BLAST of MS000273 vs. ExPASy TrEMBL
Match: A0A5A7TRB5 (Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00410 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.3e-81
Identity = 150/224 (66.96%), Postives = 175/224 (78.12%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCH-------QLMEQVEDAAAVFGSDEFRMFAYKIQRCPRT 60
           MFQGF  GIN+ V+ H+FS           L E+V+D  AVF +DEFRM++YKIQRCPR 
Sbjct: 1   MFQGFVFGIND-VYGHEFSAVSLPEVTVGNLTEKVDD-TAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPA
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDV 180
           RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK KF+ NA R RV V AVE+P E KND +
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
             I     G        RKN+R+FG++VS+ +LPHI WI ELL+
Sbjct: 181 LEIPARENG------GGRKNERSFGFDVSELELPHIEWISELLK 216

BLAST of MS000273 vs. ExPASy TrEMBL
Match: A0A1S3BYP8 (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.3e-81
Identity = 150/224 (66.96%), Postives = 175/224 (78.12%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGCH-------QLMEQVEDAAAVFGSDEFRMFAYKIQRCPRT 60
           MFQGF  GIN+ V+ H+FS           L E+V+D  AVF +DEFRM++YKIQRCPR 
Sbjct: 1   MFQGFVFGIND-VYGHEFSAVSLPEVTVGNLTEKVDD-TAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPA 120
           RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR+G+CP+GDFCE+AHGVFEYWLHPA
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDV 180
           RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK KF+ NA R RV V AVE+P E KND +
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWICELLQ 218
             I     G        RKN+R+FG++VS+ +LPHI WI ELL+
Sbjct: 181 LEIPARENG------GGRKNERSFGFDVSELELPHIEWISELLK 216

BLAST of MS000273 vs. ExPASy TrEMBL
Match: A0A6J1JDT4 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC111483496 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 6.1e-75
Identity = 143/227 (63.00%), Postives = 169/227 (74.45%), Query Frame = 0

Query: 1   MFQGFFPGINNAVFDHDFSGC---------HQLMEQVEDAAAVFGSDEFRMFAYKIQRCP 60
           MFQGF  GIN+ V+ H+F+            +L  Q  D  A+F SDEFRM+A+KIQRCP
Sbjct: 1   MFQGFVFGIND-VYGHEFTAVALPEFAYRNTRLTPQTND-TALFNSDEFRMYAFKIQRCP 60

Query: 61  RTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLH 120
           ++RSHDWTECPYAHRGEKAQRRD RRFNYSAVACPAFR G+CP+GDFCE+AHGVFE+WLH
Sbjct: 61  KSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLH 120

Query: 121 PARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKND 180
           P RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK K HF A   R  + A++ P+E KND
Sbjct: 121 PTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKND 180

Query: 181 DVSNIVNGLKGLTVREIRE-RKNDRNFGWEVSDSDLPHIGWICELLQ 218
            VS I        V+EI +   N+R+   E S+S+LPHI WI ELLQ
Sbjct: 181 GVSEI-------PVKEISDGLGNERSSELEASESELPHIEWISELLQ 218

BLAST of MS000273 vs. TAIR 10
Match: AT5G07500.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 223.0 bits (567), Expect = 2.3e-58
Identity = 114/201 (56.72%), Postives = 129/201 (64.18%), Query Frame = 0

Query: 33  AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 92
           A++GSDEFRM+AYKI+RCPRTRSHDWTECPYAHRGEKA RRD RR+ Y AVACPAFRNG 
Sbjct: 46  AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGA 105

Query: 93  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR-SETKQKFHFN 152
           C RGD CE+AHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH PEQLR SE K +  + 
Sbjct: 106 CHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCRYA 165

Query: 153 AHRTRV----------------PVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDR 212
               R                       +P+ S  DD+ +  N  K L     R    D 
Sbjct: 166 YRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDS--NEEKVLLKCWSRMSIVDD 225

Query: 213 NFGWEVSDSDLPHIGWICELL 217
           ++     D DL H  WI EL+
Sbjct: 226 HYEPSDLDLDLSHFDWISELV 244

BLAST of MS000273 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-43
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 35  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 94
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 95  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

BLAST of MS000273 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-43
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 35  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 94
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 95  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

BLAST of MS000273 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-43
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 30  DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAF- 89
           D+   + SD FRMF +KI+RC R+RSHDWT+CP+AH GEKA+RRD RRF YS   CP F 
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 90  RNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           R G+C RGD CE+AHGVFE WLHP RYRT AC  G+ C+RKVCFFAH+P QLR
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

BLAST of MS000273 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 171.4 bits (433), Expect = 8.0e-43
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 33  AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 92
           +++ +DEFRM+++K++ C R  SHDWTECP+ H GE A+RRD R+F+YS V CP FR G 
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 93  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 142
           C RGD CEYAHGVFE WLHPA+YRTR C  G  C R+VCFFAHTPE+LR
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELR 363

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141093.11.5e-12899.54zinc finger CCCH domain-containing protein 54 isoform X1 [Momordica charantia][more]
XP_022141094.12.0e-11299.48zinc finger CCCH domain-containing protein 54 isoform X2 [Momordica charantia][more]
XP_038878131.11.4e-8169.27zinc finger CCCH domain-containing protein 54 [Benincasa hispida][more]
XP_008454474.16.9e-8166.96PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044... [more]
KGN53171.21.6e-7765.16hypothetical protein Csa_015342 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
O650363.2e-5756.72Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9FU274.1e-4463.71Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=... [more]
Q6L4N45.4e-4464.75Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX... [more]
O823071.7e-4267.29Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9ZWA13.9e-4266.37Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Match NameE-valueIdentityDescription
A0A6J1CJI17.3e-12999.54zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia ... [more]
A0A6J1CHL29.6e-11399.48zinc finger CCCH domain-containing protein 54 isoform X2 OS=Momordica charantia ... [more]
A0A5A7TRB53.3e-8166.96Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BYP83.3e-8166.96zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1JDT46.1e-7563.00zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
Match NameE-valueIdentityDescription
AT5G07500.12.3e-5856.72Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT2G25900.11.2e-4367.29Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT2G25900.21.2e-4367.29Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT1G03790.12.7e-4366.37Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT2G41900.18.0e-4364.22CCCH-type zinc finger protein with ARM repeat domain [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 79..105
e-value: 1.6E-7
score: 41.0
coord: 114..137
e-value: 19.0
score: 6.1
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 83..104
e-value: 7.1E-6
score: 25.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 79..106
score: 13.97624
NoneNo IPR availableGENE3D4.10.1000.10coord: 74..151
e-value: 3.9E-8
score: 35.0
NoneNo IPR availablePANTHERPTHR14493UNKEMPT FAMILY MEMBERcoord: 29..172
NoneNo IPR availablePANTHERPTHR14493:SF109ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54coord: 29..172
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 78..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000273.1MS000273.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding