MS000266 (gene) Bitter gourd (TR) v1

Overview


Name	MS000266
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cyclin
Location	scaffold44: 434170 .. 435340 (-)
RNA-Seq Expression	MS000266
Synteny	MS000266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGATCATCAAGAAATAGCTCCCATTCCTAGAGTGATCACCTTCCTCTCCTCCCTTCTGCAGCGGGTTTCGGAGTCGAACGACGACGGGGGCCAAGCTCCGAAGATCTCGGCCTTCCACGGCCTCACCCGACCCGCCATATCGATCCATAGCTACCTACAGAGGATCTTCAAGTATGCAAATTGCAGCCCAAGTTGCTTTGTGGTGGCTTATGTGTACCTTGATCGCTTTGTTCAGCAGCACCCTTCTTTGCCTATTGATTCCTTCAATGTTCATAGGCTCCTCATTACTAGTGTTCTCGTCTCTGCCAAGTTCTTGGATGACTTGTAAGTTTTCTGTTAATTTTGTATTCTGTTTTTATATTCTTTTCCCTCGATCTGGGCCGAGTTAGAAGTTTTCAAAGGGAGAGACAAAATTTTACATTTAGGGAGAAAATTTCATTATAATTTGAATTGAGTTTCTTAAGTTTGTTTCGTAACATTTCTGTTTCTTATTTTGATTATTACTTGAATTGAGTTTAGGACTTTGCTGCTCATTATTTATTTTTTTCTCTTTCATGCCTACAGCTTTGATTTTGTTTGTGTTTCTTTCGCCATTTTGTTTGTTTCCTCATATTTTAGTCTCAATTTTATTTTATGAAAATGATATAGGGCGGATTAGTTTAATTACAAGCTCAAATTTAGAATTTTCAAAAAAAAATTGTTAATGTATTTATTAATTAAACATGAAAAATGGGTTACCCAAATTCTTGACCCGACTTGAAAATAACTTTTGAAGTGAAAAAAAACTAGTCTATGGTAGATTTTGAAGTAGAAGGGTAAAAAAACAGAGAAGATAGTGACTTATACCAATTTATTATATTTTTCTTCCTTTGATTTTTCAAGCTTTGTAAAAATTTATATAATTGATCTATTATTGTTTCAAAATTATTTACTGATGTACTTTCTATCAAATTTAGAAATTAACTATTTTTTGATATTATTTTTTCAGGTATTACAATAATGCCTACTATGCCAAAGTGGGTGGAATAAGCACCATGGAAATGAACCTTCTTGAAGTGGATTTCTTATTTGGTTTGGGATTCCAATTGAATGTGACACCAAACACTTTCCACACCTATTGCTCTTATCTCCAAACAGAAATGTTACTAACACAACCAAATCTT

mRNA sequence

ATGGCAGAAGATCATCAAGAAATAGCTCCCATTCCTAGAGTGATCACCTTCCTCTCCTCCCTTCTGCAGCGGGTTTCGGAGTCGAACGACGACGGGGGCCAAGCTCCGAAGATCTCGGCCTTCCACGGCCTCACCCGACCCGCCATATCGATCCATAGCTACCTACAGAGGATCTTCAAGTATGCAAATTGCAGCCCAAGTTGCTTTGTGGTGGCTTATGTGTACCTTGATCGCTTTGTTCAGCAGCACCCTTCTTTGCCTATTGATTCCTTCAATGTTCATAGGCTCCTCATTACTAGTGTTCTCGTCTCTGCCAAGTTCTTGGATGACTTGTATTACAATAATGCCTACTATGCCAAAGTGGGTGGAATAAGCACCATGGAAATGAACCTTCTTGAAGTGGATTTCTTATTTGGTTTGGGATTCCAATTGAATGTGACACCAAACACTTTCCACACCTATTGCTCTTATCTCCAAACAGAAATGTTACTAACACAACCAAATCTT

Coding sequence (CDS)

ATGGCAGAAGATCATCAAGAAATAGCTCCCATTCCTAGAGTGATCACCTTCCTCTCCTCCCTTCTGCAGCGGGTTTCGGAGTCGAACGACGACGGGGGCCAAGCTCCGAAGATCTCGGCCTTCCACGGCCTCACCCGACCCGCCATATCGATCCATAGCTACCTACAGAGGATCTTCAAGTATGCAAATTGCAGCCCAAGTTGCTTTGTGGTGGCTTATGTGTACCTTGATCGCTTTGTTCAGCAGCACCCTTCTTTGCCTATTGATTCCTTCAATGTTCATAGGCTCCTCATTACTAGTGTTCTCGTCTCTGCCAAGTTCTTGGATGACTTGTATTACAATAATGCCTACTATGCCAAAGTGGGTGGAATAAGCACCATGGAAATGAACCTTCTTGAAGTGGATTTCTTATTTGGTTTGGGATTCCAATTGAATGTGACACCAAACACTTTCCACACCTATTGCTCTTATCTCCAAACAGAAATGTTACTAACACAACCAAATCTT

Protein sequence

MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL

Homology

[Close]

BLAST of MS000266 vs. NCBI nr
Match: XP_022140882.1 (cyclin-U4-1-like [Momordica charantia])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK 60
           MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK
Sbjct: 1   MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK 60

Query: 61  YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAK 120
           YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVL SAKFLDDLYYNNAYYAK
Sbjct: 61  YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYYAK 120

Query: 121 VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL
Sbjct: 121 VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 169

[Close]

BLAST of MS000266 vs. NCBI nr
Match: XP_022992955.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 140/168 (83.33%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 5   HQEIAPIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRIFKY 64
           +Q   PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RIFKY
Sbjct: 8   NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKY 67

Query: 65  ANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKV 124
           ANCSPSCFVVAYVYLDR VQ+HPSLPIDSFNVHRLLITSVLVSAKFLDDL YNNAYYAKV
Sbjct: 68  ANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKV 127

Query: 125 GGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           GGISTMEMNLLE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+L TQ NL
Sbjct: 128 GGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. NCBI nr
Match: XP_023526236.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 3.0e-71
Identity = 139/171 (81.29%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62
           + H ++A PIP+VITFLSSLLQRVSESND   Q   A K+SAFHGLT+P ISI +YL+RI
Sbjct: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKVSAFHGLTKPTISIQTYLERI 64

Query: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 122
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPIDSFNVHRLLITSVLVSAKFLDDL YNNAYY
Sbjct: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124

Query: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           AKVGGIS +EMNLLE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+L TQ NL
Sbjct: 125 AKVGGISRVEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRPEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. NCBI nr
Match: XP_022941693.1 (cyclin-U4-1-like [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 138/171 (80.70%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62
           + H ++A PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RI
Sbjct: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64

Query: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 122
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPIDSFNVHRLLITSVLVSAKFLDDL YNNAYY
Sbjct: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124

Query: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           AKVGGIST+EMNLLE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L TQ NL
Sbjct: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. NCBI nr
Match: KAG6600208.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 274.2 bits (700), Expect = 7.3e-70
Identity = 138/171 (80.70%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62
           + H ++A PIP+VITFLSSLLQRVSESND   Q   A K SAFHGLT+P ISI +YL+RI
Sbjct: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKASAFHGLTKPTISIQTYLERI 64

Query: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 122
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPID FNVHRLLITSVLVSAKFLDDL YNNAYY
Sbjct: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDPFNVHRLLITSVLVSAKFLDDLCYNNAYY 124

Query: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           AKVGGIST+EMNLLE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L TQ NL
Sbjct: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.8e-64
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 13  RVITFLSSLLQRVSESND----DGGQAPKISAFHGLTRPAISIHSYLQRIFKYANCSPSC 72
           ++I FLSSLL+RV+ESND       Q+ ++S FHGL+RP I+I SYL+RIFKYANCSPSC
Sbjct: 12  KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query: 73  FVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGISTME 132
           FVVAYVYLDRF  + PSLPI+SFNVHRLLITSV+V+AKFLDDLYYNNAYYAKVGGIST E
Sbjct: 72  FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKE 131

Query: 133 MNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQP 168
           MN LE+DFLFGLGF+LNVTPNTF+ Y SYLQ EM L QP
Sbjct: 132 MNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQP 170

[Close]

BLAST of MS000266 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-58
Identity = 112/169 (66.27%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MAEDHQEIAPI-PRVITFLSSLLQRVSESNDDGG----QAPKISAFHGLTRPAISIHSYL 60
           M  D + +A I P VIT +SSLLQRVSE+NDD      +  +ISAF+ +T+P+ISI SY+
Sbjct: 9   MIHDQEPMAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYM 68

Query: 61  QRIFKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNN 120
           +RIFKYA+CS SC++VAY+YLDRF+Q+ P LPIDS NVHRL+ITSVLVSAKF+DDL YNN
Sbjct: 69  ERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNN 128

Query: 121 AYYAKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           A+YAKVGGI+T EMNLLE+DFLFG+GFQLNVT +T++ YCS LQ EM++
Sbjct: 129 AFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVM 177

[Close]

BLAST of MS000266 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.5e-57
Identity = 111/166 (66.87%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MAEDHQE-IAPI-PRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRI 60
           M +D QE +A I P V+T +S LLQRVSE+ND+  Q  K S+F G+T+P+ISI SYL+RI
Sbjct: 10  MNQDLQEPLAEIMPSVLTAMSYLLQRVSETNDNLSQKQKPSSFTGVTKPSISIRSYLERI 69

Query: 61  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 120
           F+YANCS SC++VAY+YLDRFV++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 70  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 129

Query: 121 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT +TF+ YC +LQ EM +
Sbjct: 130 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175

[Close]

BLAST of MS000266 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.2e-56
Identity = 107/165 (64.85%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 11  IPRVITFLSSLLQRVSESNDD-------GGQAPKISAFHGLTRPAISIHSYLQRIFKYAN 70
           +PRV+  LSSLLQRV+E ND        G +A  +SAF GLT+PAISI  YL+RIF++AN
Sbjct: 10  VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERIFRFAN 69

Query: 71  CSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGG 130
           CSPSC+VVAY+YLDRF+++ P+L +DSFNVHRLLITSVL + KF+DD+ YNNAY+A+VGG
Sbjct: 70  CSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFARVGG 129

Query: 131 ISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEM-LLTQP 168
           IS MEMN LEVDFLFG+ F LNVTP  F +YC+ LQ+EM  L QP
Sbjct: 130 ISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQP 174

[Close]

BLAST of MS000266 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 73/161 (45.34%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 9   APIPRVITFLSSLLQRVSESND-----DGGQAPKISAFHGLTRPAISIHSYLQRIFKYAN 68
           A  PRV+T +S +++++   N+       G    + AFHG+  P+ISI  YL+RI+KY  
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTK 81

Query: 69  CSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGG 128
           CSP+CFVV YVY+DR   +HP   + S NVHRLL+T V+++AK LDD++YNN +YA+VGG
Sbjct: 82  CSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGG 141

Query: 129 ISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           +S  ++N +E++ LF L F++ V+   F +YC +L+ EM L
Sbjct: 142 VSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182

[Close]

BLAST of MS000266 vs. ExPASy TrEMBL
Match: A0A6J1CIA6 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.1e-91
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK 60
           MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK
Sbjct: 1   MAEDHQEIAPIPRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRIFK 60

Query: 61  YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAK 120
           YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVL SAKFLDDLYYNNAYYAK
Sbjct: 61  YANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYYAK 120

Query: 121 VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL
Sbjct: 121 VGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 169

[Close]

BLAST of MS000266 vs. ExPASy TrEMBL
Match: A0A6J1JX61 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 140/168 (83.33%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 5   HQEIAPIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRIFKY 64
           +Q   PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RIFKY
Sbjct: 8   NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKY 67

Query: 65  ANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKV 124
           ANCSPSCFVVAYVYLDR VQ+HPSLPIDSFNVHRLLITSVLVSAKFLDDL YNNAYYAKV
Sbjct: 68  ANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKV 127

Query: 125 GGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           GGISTMEMNLLE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+L TQ NL
Sbjct: 128 GGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. ExPASy TrEMBL
Match: A0A6J1FSU2 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.1e-71
Identity = 138/171 (80.70%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 3   EDHQEIA-PIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRI 62
           + H ++A PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RI
Sbjct: 5   DHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64

Query: 63  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 122
           FKYANCSPSCFVVAYVYLDR  Q+HPSLPIDSFNVHRLLITSVLVSAKFLDDL YNNAYY
Sbjct: 65  FKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124

Query: 123 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQPNL 170
           AKVGGIST+EMNLLE+DFLFGLGFQLNVT NTFHTYCSYL+ E+L TQ NL
Sbjct: 125 AKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEVLSTQSNL 175

[Close]

BLAST of MS000266 vs. ExPASy TrEMBL
Match: A0A2P5CG90 (Cyclin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_155290 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 9   APIPRVITFLSSLLQRVSESNDDGG--QAPKISAFHGLTRPAISIHSYLQRIFKYANCSP 68
           A +PRV+TFLSSLLQRV+ESND     +A KIS FHGLTRP ISIHSYLQRIFKYANCSP
Sbjct: 10  AVMPRVLTFLSSLLQRVAESNDLNRHFEAQKISVFHGLTRPTISIHSYLQRIFKYANCSP 69

Query: 69  SCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGIST 128
           SCFVVAYVYLDRF Q  P LPI+SFNVHRLLITSV+VSAKF+DD+YYNNAYYAKVGGIST
Sbjct: 70  SCFVVAYVYLDRFTQSQPLLPINSFNVHRLLITSVMVSAKFMDDMYYNNAYYAKVGGIST 129

Query: 129 MEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQP 168
            EMNLLEVDFLFGL FQLNVTPNTFHTYCSYLQ EMLL  P
Sbjct: 130 TEMNLLEVDFLFGLSFQLNVTPNTFHTYCSYLQREMLLQSP 170

[Close]

BLAST of MS000266 vs. ExPASy TrEMBL
Match: A0A2P5F3S3 (Cyclin OS=Trema orientale OX=63057 GN=TorRG33x02_117710 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 133/161 (82.61%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 9   APIPRVITFLSSLLQRVSESNDDGG--QAPKISAFHGLTRPAISIHSYLQRIFKYANCSP 68
           A +PRV+TFLSSLLQRV++SND     +A KIS FHGLTRP IS+HSYLQRIFKYANCSP
Sbjct: 10  AVMPRVLTFLSSLLQRVADSNDLNRHFEAQKISVFHGLTRPTISVHSYLQRIFKYANCSP 69

Query: 69  SCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGIST 128
           SCFVVAYVYLDRF Q  P LPI+SFNVHRLLITSV+VSAKF+DD+YYNNAYYAKVGGIST
Sbjct: 70  SCFVVAYVYLDRFTQSQPLLPINSFNVHRLLITSVMVSAKFMDDMYYNNAYYAKVGGIST 129

Query: 129 MEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQP 168
            EMNLLEVDFLFGL FQLNVTPNTFHTYCSYLQ EMLL  P
Sbjct: 130 TEMNLLEVDFLFGLSFQLNVTPNTFHTYCSYLQREMLLQSP 170

[Close]

BLAST of MS000266 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 245.4 bits (625), Expect = 3.4e-65
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 13  RVITFLSSLLQRVSESND----DGGQAPKISAFHGLTRPAISIHSYLQRIFKYANCSPSC 72
           ++I FLSSLL+RV+ESND       Q+ ++S FHGL+RP I+I SYL+RIFKYANCSPSC
Sbjct: 12  KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71

Query: 73  FVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGISTME 132
           FVVAYVYLDRF  + PSLPI+SFNVHRLLITSV+V+AKFLDDLYYNNAYYAKVGGIST E
Sbjct: 72  FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKE 131

Query: 133 MNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLLTQP 168
           MN LE+DFLFGLGF+LNVTPNTF+ Y SYLQ EM L QP
Sbjct: 132 MNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQP 170

[Close]

BLAST of MS000266 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-59
Identity = 112/169 (66.27%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MAEDHQEIAPI-PRVITFLSSLLQRVSESNDDGG----QAPKISAFHGLTRPAISIHSYL 60
           M  D + +A I P VIT +SSLLQRVSE+NDD      +  +ISAF+ +T+P+ISI SY+
Sbjct: 9   MIHDQEPMAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYM 68

Query: 61  QRIFKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNN 120
           +RIFKYA+CS SC++VAY+YLDRF+Q+ P LPIDS NVHRL+ITSVLVSAKF+DDL YNN
Sbjct: 69  ERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNN 128

Query: 121 AYYAKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           A+YAKVGGI+T EMNLLE+DFLFG+GFQLNVT +T++ YCS LQ EM++
Sbjct: 129 AFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVM 177

[Close]

BLAST of MS000266 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 223.0 bits (567), Expect = 1.8e-58
Identity = 111/166 (66.87%), Postives = 139/166 (83.73%), Query Frame = 0


Query: 1   MAEDHQE-IAPI-PRVITFLSSLLQRVSESNDDGGQAPKISAFHGLTRPAISIHSYLQRI 60
           M +D QE +A I P V+T +S LLQRVSE+ND+  Q  K S+F G+T+P+ISI SYL+RI
Sbjct: 10  MNQDLQEPLAEIMPSVLTAMSYLLQRVSETNDNLSQKQKPSSFTGVTKPSISIRSYLERI 69

Query: 61  FKYANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYY 120
           F+YANCS SC++VAY+YLDRFV++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 70  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 129

Query: 121 AKVGGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT +TF+ YC +LQ EM +
Sbjct: 130 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175

[Close]

BLAST of MS000266 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 161.0 bits (406), Expect = 8.4e-40
Identity = 73/161 (45.34%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 9   APIPRVITFLSSLLQRVSESND-----DGGQAPKISAFHGLTRPAISIHSYLQRIFKYAN 68
           A  PRV+T +S +++++   N+       G    + AFHG+  P+ISI  YL+RI+KY  
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTK 81

Query: 69  CSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGG 128
           CSP+CFVV YVY+DR   +HP   + S NVHRLL+T V+++AK LDD++YNN +YA+VGG
Sbjct: 82  CSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGG 141

Query: 129 ISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEMLL 165
           +S  ++N +E++ LF L F++ V+   F +YC +L+ EM L
Sbjct: 142 VSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182

[Close]

BLAST of MS000266 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 )

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-37
Identity = 75/154 (48.70%), Postives = 106/154 (68.83%), Query Frame = 0


Query: 12  PRVITFLSSLLQRVSESNDDG----GQAPKISAFHGLTRPAISIHSYLQRIFKYANCSPS 71
           P V++ LSS L+R    N D     G    ++ F G + P ISI  YL RIFKY+ CSPS
Sbjct: 32  PTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPS 91

Query: 72  CFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLVSAKFLDDLYYNNAYYAKVGGISTM 131
           CFV+A++Y+D F+ +  +L +   NVHRL+IT+V+++AK  DD Y+NNAYYA+VGG++T 
Sbjct: 92  CFVIAHIYIDHFLHKTRAL-LKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTR 151

Query: 132 EMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTE 162
           E+N LE++ LF L F+L V P TFHT+C  L+ +
Sbjct: 152 ELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ 184

The following BLAST results are available for this feature:

BLAST of MS000266 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140882.1	1.7e-90	99.41	cyclin-U4-1-like [Momordica charantia]	[more]
XP_022992955.1	2.0e-72	83.33	cyclin-U4-1-like [Cucurbita maxima]	[more]
XP_023526236.1	3.0e-71	81.29	cyclin-U4-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941693.1	1.5e-70	80.70	cyclin-U4-1-like [Cucurbita moschata]	[more]
KAG6600208.1	7.3e-70	80.70	Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cycli...	[more]

BLAST of MS000266 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80513	4.8e-64	75.47	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9LY16	3.0e-58	66.27	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
Q9FKF6	2.5e-57	66.87	Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1	[more]
Q7XC35	6.2e-56	64.85	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]
Q9LJ45	1.2e-38	45.34	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]

BLAST of MS000266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIA6	8.1e-91	99.41	Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1	[more]
A0A6J1JX61	9.9e-73	83.33	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1	[more]
A0A6J1FSU2	7.1e-71	80.70	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1	[more]
A0A2P5CG90	1.3e-69	83.85	Cyclin OS=Parasponia andersonii OX=3476 GN=PanWU01x14_155290 PE=3 SV=1	[more]
A0A2P5F3S3	3.9e-69	82.61	Cyclin OS=Trema orientale OX=63057 GN=TorRG33x02_117710 PE=3 SV=1	[more]

BLAST of MS000266 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44740.1	3.4e-65	75.47	cyclin p4;1	[more]
AT5G07450.1	2.1e-59	66.27	cyclin p4;3	[more]
AT5G61650.1	1.8e-58	66.87	CYCLIN P4;2	[more]
AT3G21870.1	8.4e-40	45.34	cyclin p2;1	[more]
AT3G63120.1	3.0e-37	48.70	cyclin p1;1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 3..168 e-value: 2.1E-56 score: 192.9
None	No IPR available	PANTHER	PTHR15615:SF101	CYCLIN	coord: 1..165
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..165
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 28..144 e-value: 6.4E-40 score: 137.2
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 1..168 e-value: 1.4E-76 score: 254.9
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 49..132 e-value: 3.84557E-4 score: 35.6773
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 52..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000266.1	MS000266.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0019901	protein kinase binding