MS000260 (gene) Bitter gourd (TR) v1

Overview


Name	MS000260
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Polyadenylate-binding protein, putative
Location	scaffold44: 397994 .. 401867 (+)
RNA-Seq Expression	MS000260
Synteny	MS000260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGTACCTTTCTCCACTTCTTCTCTGTTCGTTCCGAGCCTCTTCCATGGAGTTTTCTGTCTCATTCTCTGTGCTTCCGATGCTAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGGTATCTTCATTATTCTTCTGTGTAATTCAGTTGGTGGTTGTTGAATTCCGTGCTTGATCTGGGCTTGAATTTCTTTAACTGGTCCTTAGTGTGGTGGGAAGGAGGATTTAAGTTGCTTGAATGAGCTTTGTAGTTTATTTGTAAGACGGGCATTGTTTGACCCTGGCTCTTTCGTGGACTTCGATTCAGTTGCTTTTCTCTACGGGAACAGACCCGAAAACCTAGATTTTAGCCTGATCATGTGTATGCACATTTAAAGGGTTTAATTAATTTAATTTAATTTAGTTGCAAAATTGAGAATCAGGTTGTTTGAAGCTCTAGGAGCTGTTAAGGATGTAACGGGGTTTTTGGTATTCTAGTTCCAGAGATTCTACAAAGAGGTGTCGTCTACAGCGGAATGATAAATGAGGTTATCGAAGAGTCGAAATAGAAGAGCTTTTTAAATGGATTAGGAGCCCCCTTGGGGGAAGTGTCGTGTCTACGACGAGGTTTATCACCTCTCTTAGGTGTCCATAACGAAAGAGTTTTATAATCATTATGTCTCTTTTTTCTCACCAATTGAATCGCTTTTTACTTTTCAACAAACTTCGTTATAGTTTTGTTTCTCATGCAAAGAAAAGGAAACAGGAGATTGCCAGATATTGAAAATTTTGAGTTTTGCGAATCGTTGTTTATGCTTATTATGTCAATAGGTGCATAATGTTCTTAGATTTTTTTTGTAGTCTTGAGGTTTTTGTTTTATGTTTATAAACCAACTAGATAATTTTAAAGATTTTCTATGCTTTGATAATACTTGAAAAACTTCTTCAAATGGTTGTCTTTCATCTTGGTGGAATGGAAGTTAAGTTCTCTCTACGTTGGTTTAATTTTGTCACATTTTTTTAATAATATTTTTCACTTTATCAATGAATCAATTTGATTGTTTAATGTCCCCCTATTTCCTTTTCAGTTATGGCCTTATAGGTATATTACGTTTATAGCTGTACAAAACTTTAGGAACTTTGAGCTTGTGAAGTATGCAATATGCGTGTGATCCTGTGTGGAGGTCTACTGATTTGAAACTTTACAGGATAGTTTTGTGATGAATTTACTGCTCTATTTCTTGTTATCATTATCTGCTTTTTGGTGATGGGAAATTTATTAATCAATGGAAGCTTTATCTCAAGGTTTATAGTCTATTTGTAATTAACTTGTATTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTGAGATTTATCACCCTTTTAGTTCACTATGTTATTTAAATGTTAAAGTTTTGCAGTACACATTTCTAGTATTACATTTGTAGTATTGGTTTCCTTTTCTTTTAGTCAACAACCATGGATGGTAGTTATATTCAAATTATCTAAATTACCGTGTTAAAAATTCTTATAAAAAACAAATTACTGTATTAAAAATGTTGATAAGCATCTTTTAAAAATTATTTTACTTCAGATGACAATTTTTTTAATTAAAAATTTTCATCGAGAAATAATACTTGATAAGAAATATAGAAGGTACTACCAAAATTTATCTACTCTTTGTAGGAGTTTATAAGAAGCCGCTCCAATGTGTTATTACGAAGTGAGTTTAATTACACAGAACTAGAAAGTGCACACTAACCAGACCTATGGATGCTAAGTCTAGGACCTCTTCCCAACTCATGCTCCTCCAATTGAAACGTCTCCAGTTTTTTTCTTACCATAGCCCAGAACAAACGTTCTTGCTGTGTTGATCTATCAGGGTTTTTTTTCTTCTTTCACAAATTCTTGCCACAAGAGAAAATGTAAAAATTCCTTGGTTCTCGTCCGCTTTCAAAAAAAGCTAACAACAGCTAGGAATTATTGCCATATTACGTCATTTCTTGTGTGATTTATCCAGTATCACCTTGTTGACATTTCCTGAGAAAGGGTCCAGCCACCATGGTTTGACCTTGTGGTCATTGAGTTCGAACTATGGTGGTCAATTACGATTTAAAATTCTACAAGTTTCCTTGCAACCAAATGGAGTAAGCAGATTAAAATTCAAAAGAATTCATTTCCACCCATGTATCGTGTCAATAGGAAATTCTCCCACCATCTCCATTCTCCAAATTCAATTGTAGTAAAGTTATCAATGTGATGTTTTAGTTTGCTATTACTCCCATCAAGGACTCTGTTCACTTCCGTTCTTTGTATACCACCCATTTTTTTCCCTTTCTCAAATATGCTAACCACCACCTTATGGCACTGGTCTTTTGGAAATCTCCATAACCACTAGTCCATAGTGCCACATTTTTCTTTCTTAAGTTGCTGTGCTTTGCCTAACCCACCAGGCTAAAGTTGCAATTATTATTTGCCAGTTGCCACAAAGATACCATAATCAATTAGCATGGAAAAAATCATTGGATGAAACAATTTCAAGAAGTGACCAAAATCTTGGACCTCAGGGAAGTGCCAATGTTCTGATTGTTTGCTTCAATTCAGTGTAACTTTTCTACTCTTGGGACTGGGCCTTGGGTGCCCCCTAGGTATGGGGGAGCAAAGCTCCGACCCATAGTTATATAAAAAAAAAAGAACAGAAAGAAAAAGAAGATTCAGCGTAACCTTTTATGTTAGTTCTCGTTTCATTGTTTTCTTTTTGTGAATTTTTTGTCAAGTATGTTTCAAGCCATTGTAAGCTGTTACCTGAAACAATATATAATCAATAGATTTCGAAGCTTGGGTCTAAAGATGTTATTCCTTAAATAGATGCTTCTTATCTGAAGCCCTATTAAGTTTTGATGGCATGCTGAATTGTTATTTCTCTGTGCACATGAATTTTCATATCTCCTCTCATTTCACAATGTTTTCCTTTTGTCACATCCCAATACAAAATGATTTATTATTTCTATTGTGGTTTTTACTTCAGGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTTTTGAAATTGCATACACAAGTGCTTTTAGTTAACTTTGGTGGCCCAATTTTGTAAACGAGTGATGTGCTGTTGGAGAGTCGTGAGGGAAGGGAGTACATAGAGAAGGGAAGTATCTTAGGAGGCTTTCGGTATACATAGTTTTCTTAGGCTGGGAGAGTGAGGGAGCTTTCACAACATCTCCAATCATGTACTTTCATTCTGGATAAATAATATGGTGTTCTACCACTGACTCGTAGGTTTTTGGTACATTTTACAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG

mRNA sequence

ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG

Coding sequence (CDS)

ATGGAGCACAATTTTAACTACGAGGAGCACGAACACGAAGTCTATGGAGGCGATATTCCCGACGACGGAGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAGGGTTACGAGGCCGAGCCCAGTAACGCCAACTCCAAGGACTTGGAGGACATGAAAAGGAGGCTCAAGGAGATCGAGGAGGAAGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTTGAGAAGGAGATGGGTGCTGTTCAAGAAGATTCATCCAGTACCTCTGCAACTCAGGCTGAAAAGGAGGAAGTAGATTCCCGATCTGTATATGTTGGTAATGTTGATTATGCATGCACTCCTGAGGAGGTTCAACAACATTTTCAATCATGTGGAACAGTGAATAGAGTGACAATTTTGACAGACAAGTTCGGTCACCCTAAGGGATTTGCTTATGTTGAGTTTGTGGAGGTTGATGCCGTACAGAATGCTTTGCTGTTGAATGAATCAGAGTTGCACGGTCGCCAACTAAAGGTCTCTGCCAAAAGGACAAATGTCCCTGGAATGAAGCAATACCGAGGAAGGCGGCCCAGCTCTTTTGGCTTTCGAGGTGGTCGTCGGCCCTTCATGCCTGCTGCACCCTTTTATCCTTCATATGGTTATGGG

Protein sequence

MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG

Homology

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BLAST of MS000260 vs. NCBI nr
Match: XP_022141261.1 (polyadenylate-binding protein 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL
Sbjct: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG
Sbjct: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 218

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BLAST of MS000260 vs. NCBI nr
Match: XP_022141262.1 (polyadenylate-binding protein 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL
Sbjct: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG
Sbjct: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 217

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BLAST of MS000260 vs. NCBI nr
Match: XP_038876136.1 (polyadenylate-binding protein 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 401.7 bits (1031), Expect = 3.9e-108
Identity = 210/218 (96.33%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           ME NFNY+EHEHEVYGGDIPDD EMDADLDMSSGRADEEGY+AEPSNANSKDLEDMKRRL
Sbjct: 1   MESNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRP+ FGFR GRRPFMPAAP YPSYGYG
Sbjct: 181 NVPGMKQYRGRRPNPFGFR-GRRPFMPAAP-YPSYGYG 216

[Close]

BLAST of MS000260 vs. NCBI nr
Match: XP_022941798.1 (polyadenylate-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGY-EAEPSNANSKDLEDMKRR 60
           MEHNFNY+EHEHEVYGGDIPDD EMDADLDMSSGRADEEGY +AEP+NANSKDLEDMKRR
Sbjct: 1   MEHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRR 60

Query: 61  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEE 120
           LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVD+RSVYVGNVDYACTPEE
Sbjct: 61  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEE 120

Query: 121 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 180
           VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR
Sbjct: 121 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 180

Query: 181 TNVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           TNVPGMKQYRGRRP+ +GFR GRRPFM  APFYPSYGYG
Sbjct: 181 TNVPGMKQYRGRRPNPYGFR-GRRPFMADAPFYPSYGYG 218

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BLAST of MS000260 vs. NCBI nr
Match: XP_008453839.1 (PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 397.1 bits (1019), Expect = 9.6e-107
Identity = 207/218 (94.95%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           ME N+NY+EHEHEVYGGDIPDD EMDADLDMSSGRADEEGY+AEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRP+ FGFR GRRPF P AP YPSYGYG
Sbjct: 181 NVPGMKQYRGRRPNPFGFR-GRRPFTPTAP-YPSYGYG 216

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BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-72
Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 7   YEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEG-----YEAEPSNANSKDLEDMKRRLK 66
           ++E EHEVYGG+IP++ E + D +       EEG      E EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 126
           EIEEEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVDSRS+YVGNVDYACTPEEVQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQ 123

Query: 127 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 186
           QHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTN
Sbjct: 124 QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN 183

Query: 187 VPGMKQYRGR-RPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           VPGM+Q+RGR RP    FR   R FMP  PFYP Y YG
Sbjct: 184 VPGMRQFRGRGRP----FR-PMRGFMPGVPFYPPYAYG 213

[Close]

BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.9e-67
Identity = 145/217 (66.82%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 8   EEHEHEVYGGDIPDDGEMDADL-----DMSSGRADEEGYEAEPSNANSKDLEDMKRRLKE 67
           EE EHEVYGG+IPD GEMD D+     D+    AD++           K+L++MK+RLKE
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAV---------KELDEMKKRLKE 61

Query: 68  IEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 127
           +E+EA ALREMQAKVEKEMGA  +D +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQ
Sbjct: 62  MEDEAAALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQ 121

Query: 128 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNV 187
           HFQ+CGTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNV
Sbjct: 122 HFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNV 181

Query: 188 PGMKQYRGRRPSSFGFRGGRRPFMPAAPF-YPSYGYG 219
           PG+KQ+RGRR + +     RRPFM  +P+ Y  YGYG
Sbjct: 182 PGLKQFRGRRFNPYMGYRFRRPFM--SPYMYSPYGYG 205

[Close]

BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-66
Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 8   EEHEHEVYGGDIPDDGEMDA---DLDMSSGRADEEGYEAEPSNANSKDLEDMKRRLKEIE 67
           EE EHEVYGG+IP+ G+ D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 68  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 127
           EEA ALREMQAKVEKEMGA Q D +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HF
Sbjct: 62  EEAAALREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHF 121

Query: 128 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 187
           Q+CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPG
Sbjct: 122 QTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPG 181

Query: 188 MKQYR-GRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           MKQY  GR   S G+R  RRPF+P   FY  YGYG
Sbjct: 182 MKQYHPGRFNPSMGYR-FRRPFVPPY-FYSPYGYG 202

[Close]

BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.2e-36
Identity = 90/168 (53.57%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 47  NANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSV 106
           +   K+L +MK R+ E+E EA  LR MQ +++ E          T A + +KE +D++SV
Sbjct: 8   DTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE----------TEALRNDKESIDAQSV 67

Query: 107 YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQNALLLNE 166
           YVGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF GHPKGFAY+EF E   V NALLLN 
Sbjct: 68  YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNG 127

Query: 167 SELHGRQLKVSAKRTNVPGMK------QYRGRRPSSFGFRGGRRPFMP 208
           S LH R LKV+ KRTNVPGM       + RGR     G+RG  R F P
Sbjct: 128 SMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAP 165

[Close]

BLAST of MS000260 vs. ExPASy Swiss-Prot
Match: Q28ZX3 (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-31
Identity = 78/163 (47.85%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 42  EAEPSNANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEM-GAVQEDSSSTSATQAEKEE 101
           E E S     +LE +K R+KE+EEEA  +++MQ++V+K+M G      ++   +  EK+E
Sbjct: 33  EEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQE 92

Query: 102 VDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GHPKGFAYVEFVEVDAVQN 161
           +D+RSVYVGNVDY  + EE++ HF  CGT+NRVTIL +K  GHPKGFAY+EF   + V+ 
Sbjct: 93  IDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVET 152

Query: 162 ALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPSSFGFRGGR 203
           AL +NE+   GRQ+KV +KRTN PG+         SF  RG R
Sbjct: 153 ALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195

[Close]

BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1CIL8 (polyadenylate-binding protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011703 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.2e-116
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL
Sbjct: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG
Sbjct: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 218

[Close]

BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1CJE1 (polyadenylate-binding protein 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011703 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.1e-114
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL
Sbjct: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQ DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQ-DSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG
Sbjct: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 217

[Close]

BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1FT42 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447055 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 207/219 (94.52%), Postives = 213/219 (97.26%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGY-EAEPSNANSKDLEDMKRR 60
           MEHNFNY+EHEHEVYGGDIPDD EMDADLDMSSGRADEEGY +AEP+NANSKDLEDMKRR
Sbjct: 1   MEHNFNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDDAEPTNANSKDLEDMKRR 60

Query: 61  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEE 120
           LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVD+RSVYVGNVDYACTPEE
Sbjct: 61  LKEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDARSVYVGNVDYACTPEE 120

Query: 121 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 180
           VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR
Sbjct: 121 VQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKR 180

Query: 181 TNVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           TNVPGMKQYRGRRP+ +GFR GRRPFM  APFYPSYGYG
Sbjct: 181 TNVPGMKQYRGRRPNPYGFR-GRRPFMADAPFYPSYGYG 218

[Close]

BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A1S3BYF0 (polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494443 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.7e-107
Identity = 207/218 (94.95%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           ME N+NY+EHEHEVYGGDIPDD EMDADLDMSSGRADEEGY+AEPSNANSKDLEDMKRRL
Sbjct: 1   MERNYNYDEHEHEVYGGDIPDDAEMDADLDMSSGRADEEGYDAEPSNANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQYRGRRP+ FGFR GRRPF P AP YPSYGYG
Sbjct: 181 NVPGMKQYRGRRPNPFGFR-GRRPFTPTAP-YPSYGYG 216

[Close]

BLAST of MS000260 vs. ExPASy TrEMBL
Match: A0A6J1J6L4 (polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483042 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 202/218 (92.66%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MEHNFNYEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEGYEAEPSNANSKDLEDMKRRL 60
           M+ NFNY+EH+HEVYGGDIPDD EMDADLDMSSGRADEE Y+AEPS+ANSKDLEDMKRRL
Sbjct: 1   MDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDAEPSSANSKDLEDMKRRL 60

Query: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEV 120
           KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEE DSRSVYVGNVDYACTPEEV
Sbjct: 61  KEIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEV 120

Query: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRT 180
           QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSAKRT
Sbjct: 121 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRT 180

Query: 181 NVPGMKQYRGRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           NVPGMKQ+RGRRP+SFGFR GRRPF+P+APF PSYGYG
Sbjct: 181 NVPGMKQFRGRRPNSFGFR-GRRPFIPSAPFPPSYGYG 217

[Close]

BLAST of MS000260 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-73
Identity = 154/218 (70.64%), Postives = 175/218 (80.28%), Query Frame = 0


Query: 7   YEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEG-----YEAEPSNANSKDLEDMKRRLK 66
           ++E EHEVYGG+IP++ E + D +       EEG      E EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQ 126
           EIEEEAGALREMQAK EK+MGA Q+ S   SA  AEKEEVDSRS+YVGNVDYACTPEEVQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSGGVSA--AEKEEVDSRSIYVGNVDYACTPEEVQ 123

Query: 127 QHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTN 186
           QHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTN
Sbjct: 124 QHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN 183

Query: 187 VPGMKQYRGR-RPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           VPGM+Q+RGR RP    FR   R FMP  PFYP Y YG
Sbjct: 184 VPGMRQFRGRGRP----FR-PMRGFMPGVPFYPPYAYG 213

[Close]

BLAST of MS000260 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-68
Identity = 151/254 (59.45%), Postives = 176/254 (69.29%), Query Frame = 0


Query: 7   YEEHEHEVYGGDIPDDGEMDADLDMSSGRADEEG-----YEAEPSNANSKDLEDMKRRLK 66
           ++E EHEVYGG+IP++ E + D +       EEG      E EP  ++S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEP-GSSSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQ------------------------------------ 126
           EIEEEAGALREMQAK EK+MGA Q                                    
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYE 123

Query: 127 EDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKG 186
           ++  ++  + AEKEEVDSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKG
Sbjct: 124 KEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKG 183

Query: 187 FAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGR-RPSSFGFRGGRRP 219
           FAYVEFVEV+AVQN+L+LNESELHGRQ+KVSAKRTNVPGM+Q+RGR RP    FR   R 
Sbjct: 184 FAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FR-PMRG 243

[Close]

BLAST of MS000260 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-68
Identity = 145/217 (66.82%), Postives = 170/217 (78.34%), Query Frame = 0


Query: 8   EEHEHEVYGGDIPDDGEMDADL-----DMSSGRADEEGYEAEPSNANSKDLEDMKRRLKE 67
           EE EHEVYGG+IPD GEMD D+     D+    AD++           K+L++MK+RLKE
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAV---------KELDEMKKRLKE 61

Query: 68  IEEEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQ 127
           +E+EA ALREMQAKVEKEMGA  +D +S +A QA KEEVD+RSV+VGNVDYACTPEEVQQ
Sbjct: 62  MEDEAAALREMQAKVEKEMGA--QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQ 121

Query: 128 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNV 187
           HFQ+CGTV+RVTILTDKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKV  KRTNV
Sbjct: 122 HFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNV 181

Query: 188 PGMKQYRGRRPSSFGFRGGRRPFMPAAPF-YPSYGYG 219
           PG+KQ+RGRR + +     RRPFM  +P+ Y  YGYG
Sbjct: 182 PGLKQFRGRRFNPYMGYRFRRPFM--SPYMYSPYGYG 205

[Close]

BLAST of MS000260 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-67
Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 8   EEHEHEVYGGDIPDDGEMDA---DLDMSSGRADEEGYEAEPSNANSKDLEDMKRRLKEIE 67
           EE EHEVYGG+IP+ G+ D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 68  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 127
           EEA ALREMQAKVEKEMGA Q D +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HF
Sbjct: 62  EEAAALREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHF 121

Query: 128 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 187
           Q+CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPG
Sbjct: 122 QTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPG 181

Query: 188 MKQYR-GRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           MKQY  GR   S G+R  RRPF+P   FY  YGYG
Sbjct: 182 MKQYHPGRFNPSMGYR-FRRPFVPPY-FYSPYGYG 202

[Close]

BLAST of MS000260 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-67
Identity = 150/215 (69.77%), Postives = 166/215 (77.21%), Query Frame = 0


Query: 8   EEHEHEVYGGDIPDDGEMDA---DLDMSSGRADEEGYEAEPSNANSKDLEDMKRRLKEIE 67
           EE EHEVYGG+IP+ G+ D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 68  EEAGALREMQAKVEKEMGAVQEDSSSTSATQAEKEEVDSRSVYVGNVDYACTPEEVQQHF 127
           EEA ALREMQAKVEKEMGA Q D +S +A Q  KEEVD+RSVYVGNVDYACTPEEVQ HF
Sbjct: 62  EEAAALREMQAKVEKEMGATQ-DPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHF 121

Query: 128 QSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPG 187
           Q+CGTVNRVTIL DKFG PKGFAYVEFVEV+AVQ AL LNESELHGRQLKVS KRTNVPG
Sbjct: 122 QTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPG 181

Query: 188 MKQYR-GRRPSSFGFRGGRRPFMPAAPFYPSYGYG 219
           MKQY  GR   S G+R  RRPF+P   FY  YGYG
Sbjct: 182 MKQYHPGRFNPSMGYR-FRRPFVPPY-FYSPYGYG 202

The following BLAST results are available for this feature:

BLAST of MS000260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141261.1	1.5e-115	100.00	polyadenylate-binding protein 1-like isoform X1 [Momordica charantia]	[more]
XP_022141262.1	1.1e-113	99.54	polyadenylate-binding protein 1-like isoform X2 [Momordica charantia]	[more]
XP_038876136.1	3.9e-108	96.33	polyadenylate-binding protein 1-like isoform X1 [Benincasa hispida]	[more]
XP_022941798.1	3.3e-107	94.52	polyadenylate-binding protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_008453839.1	9.6e-107	94.95	PREDICTED: polyadenylate-binding protein 1-like isoform X2 [Cucumis melo]	[more]

BLAST of MS000260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI4	1.6e-72	70.64	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q9FJN9	5.9e-67	66.82	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	3.8e-66	69.77	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
O14327	3.2e-36	53.57	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q28ZX3	2.4e-31	47.85	Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura OX=462...	[more]

BLAST of MS000260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIL8	7.2e-116	100.00	polyadenylate-binding protein 1-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CJE1	5.1e-114	99.54	polyadenylate-binding protein 1-like isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FT42	1.6e-107	94.52	polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BYF0	4.7e-107	94.95	polyadenylate-binding protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J6L4	3.9e-106	92.66	polyadenylate-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS000260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51120.1	1.1e-73	70.64	polyadenylate-binding protein 1	[more]
AT5G51120.2	2.5e-68	59.45	polyadenylate-binding protein 1	[more]
AT5G65260.1	4.2e-68	66.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	2.7e-67	69.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	2.7e-67	69.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 7..218
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 7..218
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 105..176 e-value: 2.0088E-49 score: 153.986
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 105..176 e-value: 4.4E-22 score: 89.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 106..174 e-value: 3.0E-16 score: 59.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 104..180 score: 16.773018
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 42..177 e-value: 1.8E-28 score: 101.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000260.1	MS000260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding