MS000231 (gene) Bitter gourd (TR) v1

Overview


Name	MS000231
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold44: 44869 .. 45165 (+)
RNA-Seq Expression	MS000231
Synteny	MS000231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC

mRNA sequence

TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC

Coding sequence (CDS)

TCTCAGATCATCAAAACGGCGGCGTATAGCACCACAGCCACAGATCCGAAGACCGAGAACGAGAGCGAAGCGGCGCCGTTTCCGGAGGGAGCCGGAGCGTCAGCCGGCGGCGAGGAGATCGAGGAAGGAGAACTGGCCGGAGACGGAGATGACGACGGAGAAGTAGAAGGCGAAGCAGCCGGAGGAGATGGAGGAGACTTCAGACCGGACGGAGTAGGAGCCGCCGCCGGAGAAGATTTCGGCGACTTAATAGACGGAGAAACCGACGGAGCCTTCGACGGCGATTTGCTCGGAGAC

Protein sequence

SQIIKTAAYSTTATDPKTENESEAAPFPEGAGASAGGEEIEEGELAGDGDDDGEVEGEAAGGDGGDFRPDGVGAAAGEDFGDLIDGETDGAFDGDLLGD

Homology

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BLAST of MS000231 vs. NCBI nr
Match: KAG6600240.1 (hypothetical protein SDJN03_05473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 7.6e-19
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 8   AYSTTATDPKTENESEAAPFPEGAGASAGGEEIEEGELAGDGDDDGEVEGEAAGGDGGDF 67
           AYST ATDP  E E EAA  P+GAGASAGGE+I++GE  G+GD D    GEAAGGDGGDF
Sbjct: 2   AYSTVATDPNIEKEIEAAALPDGAGASAGGEDIDDGE--GEGDRD----GEAAGGDGGDF 61

Query: 68  RPDGVGAAAGEDFGDLIDGETDGAFDGDLLGD 100
           +  GVGAAAGEDFGD  DGE DGA DGDL+GD
Sbjct: 62  KDAGVGAAAGEDFGDSTDGEIDGALDGDLVGD 87

The following BLAST results are available for this feature:

BLAST of MS000231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600240.1	7.6e-19	70.65	hypothetical protein SDJN03_05473, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS000231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000231 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000231.1	MS000231.1	mRNA