![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS000157 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AATATAATGTGTATCTGCTCGTTTGATATGCTATTCACCTATGTCATGTCTGGTTGGGAAGGATCGTCCAATGATTCTCGCATACTT AATATAATGTGTATCTGCTCGTTTGATATGCTATTCACCTATGTCATGTCTGGTTGGGAAGGATCGTCCAATGATTCTCGCATACTT AATATAATGTGTATCTGCTCGTTTGATATGCTATTCACCTATGTCATGTCTGGTTGGGAAGGATCGTCCAATGATTCTCGCATACTT NIMCICSFDMLFTYVMSGWEGSSNDSRIL Homology
BLAST of MS000157 vs. NCBI nr
Match: TYK21096.1 (protein ALP1-like [Cucumis melo var. makuwa]) HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. NCBI nr
Match: TYK06269.1 (protein ALP1-like [Cucumis melo var. makuwa]) HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. NCBI nr
Match: KAA0068176.1 (putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. NCBI nr
Match: XP_016901856.1 (PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo]) HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06 Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of MS000157 vs. NCBI nr
Match: XP_020272456.1 (putative nuclease HARBI1 [Asparagus officinalis]) HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0
BLAST of MS000157 vs. ExPASy TrEMBL
Match: A0A5A7VNL5 (Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001450 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. ExPASy TrEMBL
Match: A0A5D3DC11 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00620 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. ExPASy TrEMBL
Match: A0A5D3C7F6 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00500 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of MS000157 vs. ExPASy TrEMBL
Match: A0A1S4E0U9 (uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 6.2e-07 Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of MS000157 vs. ExPASy TrEMBL
Match: A0A4Y7J673 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_014815 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 7.5e-05 Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 0
BLAST of MS000157 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 2.0e-05 Identity = 16/29 (55.17%), Postives = 25/29 (86.21%), Query Frame = 0
BLAST of MS000157 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 40.4 bits (93), Expect = 2.8e-04 Identity = 14/29 (48.28%), Postives = 23/29 (79.31%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|