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MS000153 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GTATTTGGAACTCTCAGAAATTGTTGCTTTGAAGCAGAAGGTCAACTACAAAATTTACTCTTGATATCTGAGTTCCTTTGGCCAGCTTTACTTCTTCCAGTTGCTGGGAACAAGGTAATATTTTTTTATGCGCTTCTTGATCCTCAAAATTTAATAGATTTGTATTTGTTGCTTAGACAATAGTCGTGTGAGGTGGGAGTGGTTTACTTCATAATTGCTTTTACATTTATACTGTAACATTCTTGTGTGCAGGTTTATAAGGTGGAGGATACGTCAAAAATGCCACTTGAGCTTGGAACTGCACTCTCAATTGAGCGCGAGCAAACTGGTGATCCTGAAATTCGAGTTCAAGCATTGGAGGCTATATACATGATCACATTGCAGGTCAAAGAGATAATTACATCTCTGTTTGAATTTGATGAAATACCATTCCTTTTTTTGAACAAGAAACGAACTTTTCAT GTATTTGGAACTCTCAGAAATTGTTGCTTTGAAGCAGAAGGTCAACTACAAAATTTACTCTTGATATCTGAGTTCCTTTGGCCAGCTTTACTTCTTCCAGTTGCTGGGAACAAGGTTTATAAGGTGGAGGATACGTCAAAAATGCCACTTGAGCTTGGAACTGCACTCTCAATTGAGCGCGAGCAAACTGGTGATCCTGAAATTCGAGTTCAAGCATTGGAGGCTATATACATGATCACATTGCAGGTCAAAGAGATAATTACATCTCTGTTTGAATTTGATGAAATACCATTCCTTTTTTTGAACAAGAAACGAACTTTTCAT GTATTTGGAACTCTCAGAAATTGTTGCTTTGAAGCAGAAGGTCAACTACAAAATTTACTCTTGATATCTGAGTTCCTTTGGCCAGCTTTACTTCTTCCAGTTGCTGGGAACAAGGTTTATAAGGTGGAGGATACGTCAAAAATGCCACTTGAGCTTGGAACTGCACTCTCAATTGAGCGCGAGCAAACTGGTGATCCTGAAATTCGAGTTCAAGCATTGGAGGCTATATACATGATCACATTGCAGGTCAAAGAGATAATTACATCTCTGTTTGAATTTGATGAAATACCATTCCTTTTTTTGAACAAGAAACGAACTTTTCAT VFGTLRNCCFEAEGQLQNLLLISEFLWPALLLPVAGNKVYKVEDTSKMPLELGTALSIEREQTGDPEIRVQALEAIYMITLQVKEIITSLFEFDEIPFLFLNKKRTFH Homology
BLAST of MS000153 vs. NCBI nr
Match: XP_022156298.1 (protein HGH1 homolog [Momordica charantia]) HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of MS000153 vs. NCBI nr
Match: XP_022157089.1 (protein HGH1 homolog isoform X1 [Momordica charantia] >XP_022157090.1 protein HGH1 homolog isoform X1 [Momordica charantia]) HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. NCBI nr
Match: XP_022157092.1 (protein HGH1 homolog isoform X3 [Momordica charantia]) HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. NCBI nr
Match: XP_022157091.1 (protein HGH1 homolog isoform X2 [Momordica charantia]) HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. NCBI nr
Match: XP_023551596.1 (protein HGH1 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34 Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of MS000153 vs. ExPASy Swiss-Prot
Match: Q8C3I8 (Protein HGH1 homolog OS=Mus musculus OX=10090 GN=Hgh1 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06 Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of MS000153 vs. ExPASy Swiss-Prot
Match: Q6AY79 (Protein HGH1 homolog OS=Rattus norvegicus OX=10116 GN=Hgh1 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06 Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0
BLAST of MS000153 vs. ExPASy Swiss-Prot
Match: Q3KQ45 (Protein HGH1 homolog OS=Xenopus laevis OX=8355 GN=hgh1 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 8.4e-06 Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0
BLAST of MS000153 vs. ExPASy Swiss-Prot
Match: Q9BTY7 (Protein HGH1 homolog OS=Homo sapiens OX=9606 GN=HGH1 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05 Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 0
BLAST of MS000153 vs. ExPASy Swiss-Prot
Match: Q6DGR4 (Protein HGH1 homolog OS=Danio rerio OX=7955 GN=hgh1 PE=2 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.5e-05 Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of MS000153 vs. ExPASy TrEMBL
Match: A0A6J1DQ90 (Protein HGH1 homolog OS=Momordica charantia OX=3673 GN=LOC111023223 PE=3 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of MS000153 vs. ExPASy TrEMBL
Match: A0A0A0K4F9 (Protein HGH1 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G328330 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37 Identity = 88/108 (81.48%), Postives = 93/108 (86.11%), Query Frame = 0
BLAST of MS000153 vs. ExPASy TrEMBL
Match: A0A6J1DVH9 (Protein HGH1 homolog OS=Momordica charantia OX=3673 GN=LOC111023899 PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. ExPASy TrEMBL
Match: A0A6J1DTM8 (Protein HGH1 homolog OS=Momordica charantia OX=3673 GN=LOC111023899 PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. ExPASy TrEMBL
Match: A0A6J1DWY1 (Protein HGH1 homolog OS=Momordica charantia OX=3673 GN=LOC111023899 PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of MS000153 vs. TAIR 10
Match: AT1G14300.2 (ARM repeat superfamily protein ) HSP 1 Score: 131.7 bits (330), Expect = 3.5e-31 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 0
BLAST of MS000153 vs. TAIR 10
Match: AT1G14300.1 (ARM repeat superfamily protein ) HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29 Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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