MS000090 (gene) Bitter gourd (TR) v1

Overview


Name	MS000090
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit
Location	scaffold946_1: 919967 .. 920469 (+)
RNA-Seq Expression	MS000090
Synteny	MS000090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGAAAAAGTGAAGTTCCTGATGAAGGGAATTCAAAGGAGTACTCCAAGCTTGATAAATTGAAGGCAGAGCGTTTGGATGATGATAGCTTACTGATATTTAAAAGTGAATTGGTGCGAGGTGTCATAGATAAGGCTCAATTTGGTGACTATGGCTTAGTGCATACAGTGCATGAGCTTTACGGTTCAAATACAGCTGGCCTGTTGCTTTCTGTAATGAGTCGTTTGTTCACCATTTTTCTTCAGGTGATGGTGCACTAGCTCAAACTTACTTCCTTAATATAGAATAACATATTTTAGTAAATAACTCATGTTACGAGTTGGCATCGGTAATACTTGAACTTTCATCTTTCATTACTTAGATTGGGCTCACATGTGGAGTAGACGATCTTTTGCTGTTAGAATGTATGGACAAGGAGAGGGTGGAGAAACTCCAAATCCGCGAGAAAATCGGTGAACAGGTGCATCTTGGATTTCTTATGGTCAAGGATGGAGAAAATTTA

mRNA sequence

GTTGGAAAAAGTGAAGTTCCTGATGAAGGGAATTCAAAGGAGTACTCCAAGCTTGATAAATTGAAGGCAGAGCGTTTGGATGATGATAGCTTACTGATATTTAAAAGTGAATTGGTGCGAGGTGTCATAGATAAGGCTCAATTTGGTGACTATGGCTTAGTGCATACAGTGCATGAGCTTTACGGTTCAAATACAGCTGGCCTGTTGCTTTCTGTAATGAGTCGTTTGTTCACCATTTTTCTTCAGGTGATGATTGGGCTCACATGTGGAGTAGACGATCTTTTGCTGTTAGAATGTATGGACAAGGAGAGGGTGGAGAAACTCCAAATCCGCGAGAAAATCGGTGAACAGGTGCATCTTGGATTTCTTATGGTCAAGGATGGAGAAAATTTA

Coding sequence (CDS)

GTTGGAAAAAGTGAAGTTCCTGATGAAGGGAATTCAAAGGAGTACTCCAAGCTTGATAAATTGAAGGCAGAGCGTTTGGATGATGATAGCTTACTGATATTTAAAAGTGAATTGGTGCGAGGTGTCATAGATAAGGCTCAATTTGGTGACTATGGCTTAGTGCATACAGTGCATGAGCTTTACGGTTCAAATACAGCTGGCCTGTTGCTTTCTGTAATGAGTCGTTTGTTCACCATTTTTCTTCAGGTGATGATTGGGCTCACATGTGGAGTAGACGATCTTTTGCTGTTAGAATGTATGGACAAGGAGAGGGTGGAGAAACTCCAAATCCGCGAGAAAATCGGTGAACAGGTGCATCTTGGATTTCTTATGGTCAAGGATGGAGAAAATTTA

Protein sequence

VGKSEVPDEGNSKEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVHELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQVHLGFLMVKDGENL

Homology

[Close]

BLAST of MS000090 vs. NCBI nr
Match: XP_022154235.1 (DNA-directed RNA polymerase I subunit 1 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   VGKSEVPDEGNS--KEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GKSEVPDEGNS  KEYSKLDKLKAE LDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTVH
Sbjct: 765 LGKSEVPDEGNSKKKEYSKLDKLKAEHLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVH 824

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAGLLLSVMSRLFT+FLQ M G TCGVDDLLLLECMDKER E+LQI EKIGEQV
Sbjct: 825 ELYGSNTAGLLLSVMSRLFTVFLQ-MHGFTCGVDDLLLLECMDKEREEQLQICEKIGEQV 884

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 885 HLGFLKVKDGEKL 896

[Close]

BLAST of MS000090 vs. NCBI nr
Match: XP_023538901.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 4.5e-51
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSKE--YSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSKE  YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKEDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. NCBI nr
Match: XP_022971295.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSK--EYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSK  +YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKKDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. NCBI nr
Match: KAG7027758.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSK--EYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSK  +YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKKDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. NCBI nr
Match: KAG6596219.1 (DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSK--EYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSK  +YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKKDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. ExPASy Swiss-Prot
Match: Q9SVY0 (DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-28
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 7   PDEGNSKEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVHELYGSNTA 66
           P+ G+  +  ++D+   + L++D L I K+E V GVIDKAQF DYGLVHTVHELYGSN A
Sbjct: 757 PNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAA 816

Query: 67  GLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 119
           G LLSV SRLFT+FLQ   G TCGVDDL++L+ MD+ER ++LQ  E +GE+V
Sbjct: 817 GNLLSVFSRLFTVFLQTH-GFTCGVDDLIILKDMDEERTKQLQECENVGERV 867

[Close]

BLAST of MS000090 vs. ExPASy Swiss-Prot
Match: Q86H36 (DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum OX=44689 GN=polr1a PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-13
Identity = 51/125 (40.80%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   VGKSEVPDEGNSKEYSKLDKLKAERLDDDS-LLIFKSELVRGVIDKAQFG--DYGLVHTV 60
           +G++ +  E  SK  +K+   K   +  DS ++I ++E+V G++DK  FG   YGLVHT 
Sbjct: 704 IGRAPLNLEAPSKIPTKMWGTKGLEITRDSHVIIRQNEMVAGILDKGHFGASSYGLVHTC 763

Query: 61  HELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQ 120
           +ELY  + AG LL+++ R+FT +LQ   G TCGVDDLL+    +K RVE L+   + G  
Sbjct: 764 YELYDPDVAGSLLTLLGRMFTNYLQSR-GFTCGVDDLLMKNKEEKFRVETLKKANEEGYT 823

Query: 121 VHLGF 123
           V   F
Sbjct: 824 VAAKF 827

[Close]

BLAST of MS000090 vs. ExPASy Swiss-Prot
Match: P15398 (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa1 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-12
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 27  DDDSLLIFKSELVRGVIDKAQFG--DYGLVHTVHELYGSNTAGLLLSVMSRLFTIFLQVM 86
           ++ S+L    EL+ G++DK+ FG   +GLVH+VHELYG + AG LLSV+SRLFT + Q M
Sbjct: 780 EEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQ-M 839

Query: 87  IGLTCGVDDLLLLECMDKERVEKLQIREKIG 116
            G TC +DDL L E  D  R + L+  +  G
Sbjct: 840 RGFTCRMDDLRLDEQGDNWRRQLLENGKSFG 869

[Close]

BLAST of MS000090 vs. ExPASy Swiss-Prot
Match: O95602 (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-11
Identity = 45/133 (33.83%), Postives = 75/133 (56.39%), Query Frame = 0


Query: 2   GKSEVPDEGNSKEYSK-LDKLKAERLDDDSLLIFKSELVRGVIDKAQFGD--YGLVHTVH 61
           GK+++  +   KE  + +     + + +  ++I + EL+ GV+DKA +G   YGLVH  +
Sbjct: 707 GKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCY 766

Query: 62  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 121
           E+YG  T+G +L+ ++RLFT +LQ+  G T GV+D+L+    D +R      +  I E  
Sbjct: 767 EIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKR------QRIIEEST 826

Query: 122 HLGFLMVKDGENL 132
           H G   V+   NL
Sbjct: 827 HCGPQAVRAALNL 833

[Close]

BLAST of MS000090 vs. ExPASy Swiss-Prot
Match: P91875 (DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster OX=7227 GN=RpI1 PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 26  LDDDSLLIFKSELVRGVIDKAQFG--DYGLVHTVHELYGSNTAGLLLSVMSRLFTIFLQV 85
           L +  + I   EL+ GV+DK Q+G   YGL+H ++ELYG + + LLL+  +++FT FLQ 
Sbjct: 712 LSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQ- 771

Query: 86  MIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQVHLGFLMVKD 128
           + G T GV D+L+ +  D++R + ++    +G       L ++D
Sbjct: 772 LEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELED 814

[Close]

BLAST of MS000090 vs. ExPASy TrEMBL
Match: A0A6J1DJ24 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111021540 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.5e-55
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   VGKSEVPDEGNS--KEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GKSEVPDEGNS  KEYSKLDKLKAE LDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTVH
Sbjct: 765 LGKSEVPDEGNSKKKEYSKLDKLKAEHLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVH 824

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAGLLLSVMSRLFT+FLQ M G TCGVDDLLLLECMDKER E+LQI EKIGEQV
Sbjct: 825 ELYGSNTAGLLLSVMSRLFTVFLQ-MHGFTCGVDDLLLLECMDKEREEQLQICEKIGEQV 884

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 885 HLGFLKVKDGEKL 896

[Close]

BLAST of MS000090 vs. ExPASy TrEMBL
Match: A0A6J1I5C4 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.9e-51
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSK--EYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSK  +YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKKDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. ExPASy TrEMBL
Match: A0A6J1FEE5 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111444963 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.9e-51
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   VGKSEVPDEGNSK--EYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVH 60
           +GK EVPDEGNSK  +YSK DKLKAERLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV 
Sbjct: 767 LGKGEVPDEGNSKRDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQ 826

Query: 61  ELYGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 120
           ELYGSNTAG+LLSVMSRLFT++LQ M G TCGVDDLLL++CMDKER ++LQI E IGEQV
Sbjct: 827 ELYGSNTAGVLLSVMSRLFTVYLQ-MHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQV 886

Query: 121 HLGFLMVKDGENL 132
           HLGFL VKDGE L
Sbjct: 887 HLGFLKVKDGEKL 898

[Close]

BLAST of MS000090 vs. ExPASy TrEMBL
Match: A0A0A0LF53 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.5e-49
Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 3   KSEVPDEGNS--KEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVHEL 62
           K EV DEGNS  KE++K+DKLKA RLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV EL
Sbjct: 755 KGEVLDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQEL 814

Query: 63  YGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQVHL 122
           YGSNTAGLLLSVMSRLFT+FLQ   G TCGVDDLLL+ECMDKER ++LQI EKIGEQVHL
Sbjct: 815 YGSNTAGLLLSVMSRLFTVFLQTH-GFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHL 874

Query: 123 GFLMVKDGENL 132
           GFL VKDGE L
Sbjct: 875 GFLKVKDGEKL 884

[Close]

BLAST of MS000090 vs. ExPASy TrEMBL
Match: A0A5A7TQ71 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00270 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.8e-48
Identity = 108/131 (82.44%), Postives = 116/131 (88.55%), Query Frame = 0


Query: 3   KSEVPDEGNS--KEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVHEL 62
           K EV DEGNS  KEY+K+DKLKA RLDDDSLLIFK+ELVRGVIDKAQFGDYGLVHTV EL
Sbjct: 843 KGEVLDEGNSKKKEYAKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQEL 902

Query: 63  YGSNTAGLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQVHL 122
           YGS+TAGLLLSVMSRLFT+FLQ   G TCGVDDLLL+ECMDKER ++LQI EKIGEQVHL
Sbjct: 903 YGSSTAGLLLSVMSRLFTVFLQTH-GFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHL 962

Query: 123 GFLMVKDGENL 132
            FL VKDGE L
Sbjct: 963 EFLKVKDGEKL 972

[Close]

BLAST of MS000090 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 124.8 bits (312), Expect = 5.2e-29
Identity = 66/112 (58.93%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 7   PDEGNSKEYSKLDKLKAERLDDDSLLIFKSELVRGVIDKAQFGDYGLVHTVHELYGSNTA 66
           P+ G+  +  ++D+   + L++D L I K+E V GVIDKAQF DYGLVHTVHELYGSN A
Sbjct: 757 PNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAA 816

Query: 67  GLLLSVMSRLFTIFLQVMIGLTCGVDDLLLLECMDKERVEKLQIREKIGEQV 119
           G LLSV SRLFT+FLQ   G TCGVDDL++L+ MD+ER ++LQ  E +GE+V
Sbjct: 817 GNLLSVFSRLFTVFLQTH-GFTCGVDDLIILKDMDEERTKQLQECENVGERV 867

The following BLAST results are available for this feature:

BLAST of MS000090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154235.1	1.1e-54	89.47	DNA-directed RNA polymerase I subunit 1 [Momordica charantia]	[more]
XP_023538901.1	4.5e-51	83.46	DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022971295.1	1.0e-50	82.71	DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima]	[more]
KAG7027758.1	1.0e-50	82.71	DNA-directed RNA polymerase I subunit 1 [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6596219.1	1.0e-50	82.71	DNA-directed RNA polymerase I subunit 1, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of MS000090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVY0	7.3e-28	58.93	DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1...	[more]
Q86H36	1.0e-13	40.80	DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum OX=44689 ...	[more]
P15398	1.5e-12	48.35	DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain ...	[more]
O95602	3.6e-11	33.83	DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=...	[more]
P91875	1.8e-10	35.58	DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of MS000090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ24	5.5e-55	89.47	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110215...	[more]
A0A6J1I5C4	4.9e-51	82.71	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 ...	[more]
A0A6J1FEE5	4.9e-51	82.71	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11144496...	[more]
A0A0A0LF53	4.5e-49	83.21	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 P...	[more]
A0A5A7TQ71	3.8e-48	82.44	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of MS000090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57660.1	5.2e-29	58.93	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 2..97 e-value: 1.9E-21 score: 78.4
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 20..94 e-value: 2.7E-10 score: 40.4
IPR015699	DNA-directed RNA pol I, largest subunit	PANTHER	PTHR19376:SF11	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1	coord: 34..120
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 34..120
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 24..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000090.1	MS000090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding