MELO3C035729 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035729
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cysteine-rich receptor-kinase-like protein
Location	chr12: 22240996 .. 22242173 (-)
RNA-Seq Expression	MELO3C035729
Synteny	MELO3C035729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGAAACCTTCACCACTAGCAGCACCTACAAAGCTAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGGCTTCTCTACAACTTTTTCTACAGCCATCACCACAAAGCTTATACTATTGGTTTATGCAGAGGTGACGTTAAGCACGACTCTTGCACAACCTGCCTCAACTACTCCACAACCCTTCTCACCAAAAACTGTCCCACCCCAAATTGATAGGCCATTGTTTGGTACAAAGATTGTATGCTTTGTTACTCTGATCTCTCCTTGTTCGGCGTTCATGATCAAACACGAGGAGATACTATTCCTACATGATCAAACACGAGGTGTGATACCTCACGCAATATTTTATATTGGTGGAGGAGTTGCTAATTAAATTTGTCTATGCCACTATTGAATATAATGCAGTCAAATCTGATTTATTTAGTTTTGATATTTTTGTTCCAAAGATCGTGACTAGACAAAAGAATAACGTGCTCAAACCAATGAAGAGATTATATTGTAGAAACTCTTGTTAGCTACGTATGCATGTACAAAGTTCATGTTCAATTTTAGTATCATTATACTAGATCGATGAATATGATTGCTCATTATAACCGTTGTACTAATTGTAGGTATATGGAGAAATTGGCGATCAGGAAATGAACTAGATGTTATTGACTCTTATTTGAAAAGTGATTCAAGAATTGAAATGGCCTAGATGCATTCCTGTTGGGATTGCTGTGCATTAAAAAAAAATCCACTCCCAAGGCCCTCCCAACCAGCATTTTTCATCGATACTTCTTGCTTTCCAATGTATAGACAGTTTGAAGACTACACAGTTCAACTCATGTGTTCCAAATGACTTGTCAATTATCGAATTATATCCTCCTTTAGTTTTACTTTATCCCATGTATATCTTATAGTTATGAATGTTATATTCCTTATCTCGAACGTATATATGTTATCTGATATCATTAAGTCACCATTGATTTTAAAATTTAAATGGATAGGCAGAGGTAAATTCAATATTATATTATCTAATTATAAGTAGATTACATTGTGTTAGAATTTCAATTTTTTTTGGACCAAATTAAATGCCCATTTAATATTCGGAGATCTATCTCAAAACAAATTTGTAATAGAGGATCAGTAGCTCATCTACCATTGTGAAATTC

mRNA sequence

ATGGCCAAGGAAACCTTCACCACTAGCAGCACCTACAAAGCTAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGGCTTCTCTACAACTTTTTCTACAGCCATCACCACAAAGCTTATACTATTGGTTTATGCAGAGGTGACGTTAAGCACGACTCTTGCACAACCTGCCTCAACTACTCCACAACCCTTCTCACCAAAAACTGTCCCACCCCAAATTGATAGGCCATTGTTTGGTACAAAGATTGTATGCTTTGTTACTCTGATCTCTCCTTGTTCGGCGTTCATGATCAAACACGAGGAGATACTATTCCTACATGATCAAACACGAGGTATATGGAGAAATTGGCGATCAGGAAATGAACTAGATGTTATTGACTCTTATTTGAAAAGTGATTCAAGAATTGAAATGGCCTAGATGCATTCCTGTTGGGATTGCTGTGCATTAAAAAAAAATCCACTCCCAAGGCCCTCCCAACCAGCATTTTTCATCGATACTTCTTGCTTTCCAATGTATAGACAGTTTGAAGACTACACAGTTCAACTCATGTGTTCCAAATGACTTGTCAATTATCGAATTATATCCTCCTTTAGTTTTACTTTATCCCATGTATATCTTATAGTTATGAATGTTATATTCCTTATCTCGAACGTATATATGTTATCTGATATCATTAAGTCACCATTGATTTTAAAATTTAAATGGATAGGCAGAGGTAAATTCAATATTATATTATCTAATTATAAGTAGATTACATTGTGTTAGAATTTCAATTTTTTTTGGACCAAATTAAATGCCCATTTAATATTCGGAGATCTATCTCAAAACAAATTTGTAATAGAGGATCAGTAGCTCATCTACCATTGTGAAATTC

Coding sequence (CDS)

ATGGCCAAGGAAACCTTCACCACTAGCAGCACCTACAAAGCTAATCTGGAACCACCTCCTCTCCACCTTAACCACCCGTCAAATCGACTATGGCTTCTCTACAACTTTTTCTACAGCCATCACCACAAAGCTTATACTATTGGTTTATGCAGAGGTGACGTTAAGCACGACTCTTGCACAACCTGCCTCAACTACTCCACAACCCTTCTCACCAAAAACTGTCCCACCCCAAATTGA

Protein sequence

MAKETFTTSSTYKANLEPPPLHLNHPSNRLWLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLNYSTTLLTKNCPTPN

Homology

[Close]

BLAST of MELO3C035729 vs. ExPASy Swiss-Prot
Match: Q8S9L6 (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-05
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRLWLLYNFFY--SHHHKAYTIGLCRGDVKHDSCTTCL 65
           FT +ST+  NL      L+   ++ +  YN     S   +AY IGLCR +VK D C +C+
Sbjct: 42  FTANSTFAGNLNRLVSSLSSLKSQAYGFYNLSSGDSSGERAYAIGLCRREVKRDDCVSCI 101

Query: 66  NYSTTLLTKNCP 76
             +   LTK CP
Sbjct: 102 QTAARNLTKQCP 113

[Close]

BLAST of MELO3C035729 vs. ExPASy Swiss-Prot
Match: O65405 (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN=CRK28 PE=3 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 9.7e-04
Identity = 25/75 (33.33%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRLWLLYNFFY--SHHHKAYTIGLCRGDVKHDSCTTCL 65
           FT +S++  NL      L+  +++ +  YN     S   +AY IGLCR +VK D C +C+
Sbjct: 44  FTANSSFAGNLNGLVSSLSSLTSKPYGFYNLSSGDSSGERAYAIGLCRREVKRDDCLSCI 103

Query: 66  NYSTTLLTKNCPTPN 79
             +   L + CP  N
Sbjct: 104 QIAARNLIEQCPLTN 118

[Close]

BLAST of MELO3C035729 vs. NCBI nr
Match: XP_038895216.1 (putative receptor-like protein kinase At4g00960 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 2   AKETFTTSSTYKANLEPPPLHL-----NHPSNRLWLLYNFFYSHHHKAYTIGLCRGDVKH 61
           A+  +T +STYKANL+    HL      H  +  +  YNF Y H HKAY IGLCRGDV  
Sbjct: 50  AQGNYTNNSTYKANLD----HLLSTLTTHQID--YGFYNFSYGHDHKAYAIGLCRGDVMP 109

Query: 62  DSCTTCLNYSTTLLTKNCPT 77
           DSC TCLN S TLL +NCPT
Sbjct: 110 DSCQTCLNKSRTLLAQNCPT 123

[Close]

BLAST of MELO3C035729 vs. NCBI nr
Match: XP_016898896.1 (PREDICTED: cysteine-rich receptor-like protein kinase 28 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 2   AKETFTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCT 61
           A+  +TT+S YKANL    L     +N++ +  YN  Y H HKAY IGLCRGDV+ D+C 
Sbjct: 44  AEGNYTTNSPYKANLN--HLLSTFTTNQIDYGFYNLSYGHDHKAYAIGLCRGDVRPDTCR 103

Query: 62  TCLNYSTTLLTKNCPT 77
           +CL  S TLLT NCPT
Sbjct: 104 SCLTNSITLLTNNCPT 117

[Close]

BLAST of MELO3C035729 vs. NCBI nr
Match: XP_038894834.1 (putative receptor-like protein kinase At4g00960 [Benincasa hispida])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1   MAKETFTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSC 60
           +A+  +T +STYKANL    L     ++++ +  YNF Y H HKAY IGLCRG V   SC
Sbjct: 42  VAEGNYTNNSTYKANLN--NLLSTLTTHQIDYGFYNFSYGHDHKAYAIGLCRGGVAPQSC 101

Query: 61  TTCLNYSTTLLTKNCPT 77
            TCLN S TLL++NCPT
Sbjct: 102 KTCLNNSITLLSQNCPT 116

[Close]

BLAST of MELO3C035729 vs. NCBI nr
Match: XP_031736357.1 (putative receptor-like protein kinase At4g00960 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
           +TT+S YK NL    L     ++++ +  YN  Y H HKAY IGLCRGDV  DSC +CLN
Sbjct: 48  YTTNSPYKPNLN--HLLSTFTTHQIDYGFYNLSYGHDHKAYAIGLCRGDVMPDSCRSCLN 107

Query: 66  YSTTLLTKNCPT 77
            S TLLT NCPT
Sbjct: 108 NSITLLTNNCPT 117

[Close]

BLAST of MELO3C035729 vs. NCBI nr
Match: KGN64581.2 (hypothetical protein Csa_013584 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
           +TT+S YK NL    L     ++++ +  YN  Y H HKAY IGLCRGDV  DSC +CLN
Sbjct: 48  YTTNSPYKPNLN--HLLSTFTTHQIDYGFYNLSYGHDHKAYAIGLCRGDVMPDSCRSCLN 107

Query: 66  YSTTLLTKNCPT 77
            S TLLT NCPT
Sbjct: 108 NSITLLTNNCPT 117

[Close]

BLAST of MELO3C035729 vs. ExPASy TrEMBL
Match: A0A1S4DSD0 (cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo OX=3656 GN=LOC103489199 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 2   AKETFTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCT 61
           A+  +TT+S YKANL    L     +N++ +  YN  Y H HKAY IGLCRGDV+ D+C 
Sbjct: 44  AEGNYTTNSPYKANLN--HLLSTFTTNQIDYGFYNLSYGHDHKAYAIGLCRGDVRPDTCR 103

Query: 62  TCLNYSTTLLTKNCPT 77
           +CL  S TLLT NCPT
Sbjct: 104 SCLTNSITLLTNNCPT 117

[Close]

BLAST of MELO3C035729 vs. ExPASy TrEMBL
Match: A0A0A0LX67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065420 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.4e-10
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 6  FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
          +TT+S YK NL    L     ++++ +  YN  Y H HKAY IGLCRGDV  DSC +CLN
Sbjct: 19 YTTNSPYKPNLN--HLLSTFTTHQIDYGFYNLSYGHDHKAYAIGLCRGDVMPDSCRSCLN 78

Query: 66 YSTTLLTKNCPT 77
           S TLLT NCPT
Sbjct: 79 NSITLLTNNCPT 88

[Close]

BLAST of MELO3C035729 vs. ExPASy TrEMBL
Match: A0A0A0LUW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065920 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 6  FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
          +TT+S YK NL    L     ++++ +  YN  Y H HKAY IGLCRGDV  DSC +CLN
Sbjct: 19 YTTNSPYKPNLN--HLLSTFTTHQIDYGFYNLSYGHDHKAYAIGLCRGDVMPDSCRSCLN 78

Query: 66 YSTTLLTKNCPT 77
           S TLLT NCPT
Sbjct: 79 NSITLLTGNCPT 88

[Close]

BLAST of MELO3C035729 vs. ExPASy TrEMBL
Match: A0A5A7URK4 (Cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00650 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 6    FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
            + T+S+Y+ANL+   L      +++ +  YNF Y HHHKAY +GLCRGD+   +C TCLN
Sbjct: 1430 YITNSSYQANLD--HLLSTFTIHQIDYGFYNFSYGHHHKAYAMGLCRGDITPLACQTCLN 1489

Query: 66   YSTTLLTKNCPT 77
             S TLL KNCP+
Sbjct: 1490 NSITLLPKNCPS 1499

[Close]

BLAST of MELO3C035729 vs. ExPASy TrEMBL
Match: A0A5D3BKD2 (Cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006170 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.1e-09
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 6    FTTSSTYKANLEPPPLHLNHPSNRL-WLLYNFFYSHHHKAYTIGLCRGDVKHDSCTTCLN 65
            + T+S+Y+ANL+   L      +++ +  YNF Y HHHKAY +GLCRGD+   +C TCLN
Sbjct: 1436 YITNSSYQANLD--HLLSTFTIHQIDYGFYNFSYGHHHKAYAMGLCRGDITPLACQTCLN 1495

Query: 66   YSTTLLTKNCPT 77
             S TLL KNCP+
Sbjct: 1496 NSITLLPKNCPS 1505

[Close]

BLAST of MELO3C035729 vs. TAIR 10
Match: AT4G21410.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 29 )

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRLWLLYNFFY--SHHHKAYTIGLCRGDVKHDSCTTCL 65
           FT +ST+  NL      L+   ++ +  YN     S   +AY IGLCR +VK D C +C+
Sbjct: 42  FTANSTFAGNLNRLVSSLSSLKSQAYGFYNLSSGDSSGERAYAIGLCRREVKRDDCVSCI 101

Query: 66  NYSTTLLTKNCP 76
             +   LTK CP
Sbjct: 102 QTAARNLTKQCP 113

[Close]

BLAST of MELO3C035729 vs. TAIR 10
Match: AT4G21400.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 28 )

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 25/75 (33.33%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 6   FTTSSTYKANLEPPPLHLNHPSNRLWLLYNFFY--SHHHKAYTIGLCRGDVKHDSCTTCL 65
           FT +S++  NL      L+  +++ +  YN     S   +AY IGLCR +VK D C +C+
Sbjct: 44  FTANSSFAGNLNGLVSSLSSLTSKPYGFYNLSSGDSSGERAYAIGLCRREVKRDDCLSCI 103

Query: 66  NYSTTLLTKNCPTPN 79
             +   L + CP  N
Sbjct: 104 QIAARNLIEQCPLTN 118

The following BLAST results are available for this feature:

BLAST of MELO3C035729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S9L6	3.9e-05	37.50	Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O65405	9.7e-04	33.33	Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of MELO3C035729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895216.1	3.5e-11	55.00	putative receptor-like protein kinase At4g00960 [Benincasa hispida]	[more]
XP_016898896.1	3.0e-10	52.63	PREDICTED: cysteine-rich receptor-like protein kinase 28 [Cucumis melo]	[more]
XP_038894834.1	1.1e-09	51.95	putative receptor-like protein kinase At4g00960 [Benincasa hispida]	[more]
XP_031736357.1	1.9e-09	54.17	putative receptor-like protein kinase At4g00960 [Cucumis sativus]	[more]
KGN64581.2	1.9e-09	54.17	hypothetical protein Csa_013584 [Cucumis sativus]	[more]

BLAST of MELO3C035729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSD0	1.5e-10	52.63	cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LX67	9.4e-10	54.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065420 PE=4 SV=1	[more]
A0A0A0LUW5	1.6e-09	54.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065920 PE=4 SV=1	[more]
A0A5A7URK4	6.1e-09	50.00	Cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BKD2	6.1e-09	50.00	Cysteine-rich receptor-like protein kinase 28 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C035729 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21410.1	2.8e-06	37.50	cysteine-rich RLK (RECEPTOR-like protein kinase) 29	[more]
AT4G21400.1	6.9e-05	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 28	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002902	Gnk2-homologous domain	PFAM	PF01657	Stress-antifung	coord: 4..75 e-value: 1.8E-7 score: 31.7
IPR038408	Gnk2-homologous domain superfamily	GENE3D	3.30.430.20		coord: 1..78 e-value: 2.2E-6 score: 29.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035729.1	MELO3C035729.1	mRNA