MELO3C035690 (gene) Melon (DHL92) v4

Overview
NameMELO3C035690
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr12: 18616767 .. 18617134 (+)
RNA-Seq ExpressionMELO3C035690
SyntenyMELO3C035690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAGGTACTTTGAAATGGATCAACAAACCCTTCTTGGAGCTTCTTGGAGTCCTAACTGTGTTCACACTAGTCCAACGTCAGATGCTCCTAACGTTGGAGGCATTGATGAACGACAATCAGCGTTTTCCATATACACCGTACAATACTAGGCATAGAATTAGGCAGCTTGTGTACTTTCACATGATACACGAGTCTGATCCTTTGTCTCGACAAAGCACGCACATGAATAGGTTAACATTCGCTATTCTATGCCATTTACTTAAGACTGTCGCTAGCCTTTCGTCAATAGAGATTGTCAATGTTGAGAAGATGGTTGTCATGTTCTTGCACGTCCTTGCCTATGTCGTGAAGAATCACATTATTTAA

mRNA sequence

TTTTAGGTACTTTGAAATGGATCAACAAACCCTTCTTGGAGCTTCTTGGAGTCCTAACTGTGTTCACACTAGTCCAACGTCAGATGCTCCTAACGTTGGAGGCATTGATGAACGACAATCAGCGTTTTCCATATACACCGTACAATACTAGGCATAGAATTAGGCAGCTTGTGTACTTTCACATGATACACGAGTCTGATCCTTTGTCTCGACAAAGCACGCACATGAATAGGTTAACATTCGCTATTCTATGCCATTTACTTAAGACTGTCGCTAGCCTTTCGTCAATAGAGATTGTCAATGTTGAGAAGATGGTTGTCATGTTCTTGCACGTCCTTGCCTATGTCGTGAAGAATCACATTATTTAA

Coding sequence (CDS)

ATGCTCCTAACGTTGGAGGCATTGATGAACGACAATCAGCGTTTTCCATATACACCGTACAATACTAGGCATAGAATTAGGCAGCTTGTGTACTTTCACATGATACACGAGTCTGATCCTTTGTCTCGACAAAGCACGCACATGAATAGGTTAACATTCGCTATTCTATGCCATTTACTTAAGACTGTCGCTAGCCTTTCGTCAATAGAGATTGTCAATGTTGAGAAGATGGTTGTCATGTTCTTGCACGTCCTTGCCTATGTCGTGAAGAATCACATTATTTAA

Protein sequence

MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLLKTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII
Homology
[Close]
BLAST of MELO3C035690 vs. NCBI nr
Match: KAA0042481.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK22896.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMNDN+R P TPY+TRHRIRQL YF MIHE D + RQSTHM+R TFAILCHLL
Sbjct: 20  MLLTLELLMNDNKRLPQTPYDTRHRIRQLAYFRMIHEFDFVCRQSTHMDRQTFAILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ VKN +I
Sbjct: 80  RIVAGLSSTEIVNVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. NCBI nr
Match: KAA0043030.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLL LEALMNDN+R P TPY+TRHRIRQL YF MIHESD + R+ST M+R TF ILCHLL
Sbjct: 20  MLLMLEALMNDNKRLPQTPYDTRHRIRQLAYFRMIHESDLVCRKSTRMDRRTFTILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           +TV+ LSS EIV+VE+MV MFLHVLA+ VKN +I
Sbjct: 80  RTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. NCBI nr
Match: KAA0036563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           +LLTLE LMNDN+R  YTP +TRHRIRQL YF MIHESD + RQST M+R TFAILCHLL
Sbjct: 20  ILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           +TV+SLSS EIV+VE+MV MFLHVLA+ VKN +I
Sbjct: 80  RTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. NCBI nr
Match: KAA0032340.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMN+N+R P+TP +TRHRIRQL YFHMIHESD + RQSTHM+  TF ILCHLL
Sbjct: 20  MLLTLELLMNNNKRLPHTPSDTRHRIRQLAYFHMIHESDLVCRQSTHMDMRTFVILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ V N  I
Sbjct: 80  RNVAGLSSTEIVNVEEMVAMFLHVLAHDVTNRAI 113

[Close]
BLAST of MELO3C035690 vs. NCBI nr
Match: TYK19044.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 7.2e-27
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMN+N+R P+TP +TRHRIRQL YFHMIHESD + RQSTHM+  TF ILCHLL
Sbjct: 20  MLLTLELLMNNNKRLPHTPSDTRHRIRQLAYFHMIHESDLVCRQSTHMDMRTFVILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ V N  I
Sbjct: 80  RNVAGLSSTEIVNVEEMVAMFLHVLAHDVTNRAI 113

[Close]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match: A0A5A7TLM6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00360 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.4e-29
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMNDN+R P TPY+TRHRIRQL YF MIHE D + RQSTHM+R TFAILCHLL
Sbjct: 20  MLLTLELLMNDNKRLPQTPYDTRHRIRQLAYFRMIHEFDFVCRQSTHMDRQTFAILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ VKN +I
Sbjct: 80  RIVAGLSSTEIVNVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match: A0A5A7T0Z8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00710 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           +LLTLE LMNDN+R  YTP +TRHRIRQL YF MIHESD + RQST M+R TFAILCHLL
Sbjct: 20  ILLTLELLMNDNKRITYTPSDTRHRIRQLAYFRMIHESDLVCRQSTRMDRRTFAILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           +TV+SLSS EIV+VE+MV MFLHVLA+ VKN +I
Sbjct: 80  RTVSSLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match: A0A5A7TI78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001100 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-27
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLL LEALMNDN+R P TPY+TRHRIRQL YF MIHESD + R+ST M+R TF ILCHLL
Sbjct: 20  MLLMLEALMNDNKRLPQTPYDTRHRIRQLAYFRMIHESDLVCRKSTRMDRRTFTILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           +TV+ LSS EIV+VE+MV MFLHVLA+ VKN +I
Sbjct: 80  RTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVI 113

[Close]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match: A0A5A7SNH9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001990 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.5e-27
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMN+N+R P+TP +TRHRIRQL YFHMIHESD + RQSTHM+  TF ILCHLL
Sbjct: 20  MLLTLELLMNNNKRLPHTPSDTRHRIRQLAYFHMIHESDLVCRQSTHMDMRTFVILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ V N  I
Sbjct: 80  RNVAGLSSTEIVNVEEMVAMFLHVLAHDVTNRAI 113

[Close]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match: A0A5D3D656 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6384G00040 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.5e-27
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1   MLLTLEALMNDNQRFPYTPYNTRHRIRQLVYFHMIHESDPLSRQSTHMNRLTFAILCHLL 60
           MLLTLE LMN+N+R P+TP +TRHRIRQL YFHMIHESD + RQSTHM+  TF ILCHLL
Sbjct: 20  MLLTLELLMNNNKRLPHTPSDTRHRIRQLAYFHMIHESDLVCRQSTHMDMRTFVILCHLL 79

Query: 61  KTVASLSSIEIVNVEKMVVMFLHVLAYVVKNHII 95
           + VA LSS EIVNVE+MV MFLHVLA+ V N  I
Sbjct: 80  RNVAGLSSTEIVNVEEMVAMFLHVLAHDVTNRAI 113

The following BLAST results are available for this feature:
BLAST of MELO3C035690 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042481.11.3e-2875.53putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK22896.1 putative nucleas... [more]
KAA0043030.13.2e-2772.34retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036563.13.2e-2773.40retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032340.17.2e-2772.34putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
TYK19044.17.2e-2772.34putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TLM66.4e-2975.53Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7T0Z81.6e-2773.40Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TI781.6e-2772.34Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SNH93.5e-2772.34Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3D6563.5e-2772.34Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C035690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035690.1MELO3C035690.1mRNA