MELO3C035675 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035675
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr12: 17536882 .. 17539229 (-)
RNA-Seq Expression	MELO3C035675
Synteny	MELO3C035675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAATGAGCGTCGAGAATACCCTTATTCTCGATGCCATAAAGGGGATCTCTCGACGTTTTCGTGATGCGTTGGGAGATCCCCTTTTTAAACGTTTCAGTTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCATCGTCGTCTCTAGCTCACCACCATCCGTTCCGTCGTCGTTGTTGTCCCTCGCCGTCGTCTGCCACCTTAGGTAAGTTTAAATATAAAGTTTGTTTTGTTTAAATATAAGTTTTAGGATTTTTTTTTTTTTAAGAAAATTGTTTTAGGATTTTTATTTTGGAATAGATTTTTGTTTGTTAAATGTATTCTTGTATAGATGTGTGTAATTTGTGGTTGAATTGAAATTTGAAGGGTTTAGGGTTTAGGATTTATAGTTAAATTGAAAATTGAATTAGGGGGGGATTATAGTTAAATTGAAAATTGAATTGGAGGGGGGGTTTAGTTTGTTGGTGCGGGTTCAAAATATTGATGATTGTGGATTAAATTATGAATGATATTGAGTTTTTTGTGGTATTGGAACATCAAGTTTTTCTGCTTAAACCTTTACCCCAAGTCTATTGAGACTATGAATAACGATTCTTTCTTGAGTCATTAGAAAAGTTGTTGTATTATGGATGCAATATACACTTCTCTTGTACATTTGGAACATTTTGTTATTATTGTTAACTATTACATAATTGAGTTCTATGATTGACAAACCTAGGGATGTAGGATTTGATCTTGACCCCTTACCATTCCATGTTAAGCACCACTTACCTTATCAAACTCATAAGCAACACACGATCTAATTAAAGCCATGAAAATTGGAGCAAATGAAGTTGTTCTTTTAACGTTCTACCTTCAGTTTGTTAATTCCCCAACATGGAAAAAAAATTCTTCCCAAGTTTTCTCAGATCTCGAATTTATGGATTTCATCTGTTTTTAGCTTGCTGTGGAGTTACATGTGAGGTTCTCAGTTTTTCTCTTCTGCGGTAATGAACAAGTTACAAACTCATTGATGGATTCAATTAAGACATTGGCTGCATTTTCACAGGGTTCCATATTATTTATTTGCTCTATATGGTTAACTCATCATCTATGTTATTGTTAGGGTGTTGATATAATATTAACTTTACCTTCACTTTCAACTCATGCTTTTGGGTCAATAACGTCGTTTACTTTCTATTTAACATTAATTTCTACTTATTGGGTTTTTCTTTCAAATTTCAAGCACACAAGTGAGAGGCAAGTGCTAGAGTATTGATTCATCATTTTAAGCTTTTGTGTCAATCGATGATTTAAGAGTTACAATAAGTCTCTTTGCAAAACTAACTGCAATTTGTTCCTGTAGGAAATCATCATCTCATCGAATAAAACAAAAGCAATACACCTAGAGACTATAGCTTCAACATGTTCATCTCTGGTATTGTAGCGGGTACTATGACTTTGCGATATTTATAGCACTTAATACTTGCTGGACTATTGTTCTTAAGAAAATTCCTCCAATGTCCAATCATGTTCTCTTTTGCTATAGTTTATGTTTATTCATTGTTTCTTTTTAGCATCATTACTCAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGTAATTTGTGCTGATTGAGATTAAAATTTCTCAGGGAAGAGTTCGAGTCATGGCATTGGTAGTGGAGCTATTTTTAGTTTCTAGCTCTGTGGCATCGACAGTATACAATGCAAATTTACTAAGCCTACTGAAAAGTGAAATCAATAACCTGCAGTCGTTACTAAGCGTTTTTTTGTATTATGAGAGCTACATTTTTTGTATTAAACTTACTAATATTTTTTGAACTTATTCATATTATTAATTTTAAATCTTTTTTTAATTTGTGTTTGTATTTCTTAATTTATTAATTTATATTGAATTTGTTTTAATTTAATCCAAAACGTCGAAAAAAATATTTGAGCAATCCGAATGTCGTTGTGAATGTTTGAGCAAAATATTTTAGGGAAAAAATTAGAAATTACATATTTAAAAAAATATATATATAAAAAGGAATTCTCGACGTAATGAAACGTCGAGACTAGAATGCATAAGACACATCGGGGAAGGGTTTCTCGATGCATAAAAGACGTCGAGAAAAAACGTCAGAAGAGGCATTCCCGACGCCACTTTGGCAGACGCATGTTACGGCGTCGAGAGAGCCATTCCTGTAGTCGTGTTGGTACGGTGTTGGGAATGCCTCTCCCGACTCATTTCTTCCGACGTTGTTCCCGACGCCATGAAAAACATCGACATATCTTTTCTCGACGTTTTTGTGCGTCGGGAGTACCCCCGTCTCTTATAG

mRNA sequence

TTTAATGAGCGTCGAGAATACCCTTATTCTCGATGCCATAAAGGGGATCTCTCGACGTTTTCGTGATGCGTTGGGAGATCCCCTTTTTAAACGTTTCAGTTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCATCGTCGTCTCTAGCTCACCACCATCCGTTCCGTCGTCGTTGTTGTCCCTCGCCGTCGTCTGCCACCTTAGCGGGTACTATGACTTTGCGATATTTATAGCACTTAATACTTGCTGGACTATTGTTCTTAAGAAAATTCCTCCAATGTCCAATCATGTTCTCTTTTGCTATACATCATTACTCAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGGAAGAGTTCGAGTCATGGCATTGGTAGTGGAGCTATTTTTAGTTTCTAGCTCTGTGGCATCGACAGTATACAATGCAAATTTACTAAGCCTACTGAAAAGTGAAATCAATAACCTGCAGTCGTTACTAAGCACGTCGAGAAAAAACGTCAGAAGAGGCATTCCCGACGCCACTTTGGCAGACGCATGTTACGGCGTCGAGAGAGCCATTCCTGTAGTCGTGTTGGTACGGTGTTGGGAATGCCTCTCCCGACTCATTTCTTCCGACGTTGTTCCCGACGCCATGAAAAACATCGACATATCTTTTCTCGACGTTTTTGTGCGTCGGGAGTACCCCCGTCTCTTATAG

Coding sequence (CDS)

ATGCGTTGGGAGATCCCCTTTTTAAACGTTTCAGTTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCATCGTCGTCTCTAGCTCACCACCATCCGTTCCGTCGTCGTTGTTGTCCCTCGCCGTCGTCTGCCACCTTAGCGGGTACTATGACTTTGCGATATTTATAGCACTTAATACTTGCTGGACTATTGTTCTTAAGAAAATTCCTCCAATGTCCAATCATGTTCTCTTTTGCTATACATCATTACTCAGAAGAAGAGTCCCCCATCTTGTAGTTTACTTGATAGGAAGAGTTCGAGTCATGGCATTGGTAGTGGAGCTATTTTTAGTTTCTAGCTCTGTGGCATCGACAGTATACAATGCAAATTTACTAAGCCTACTGAAAAGTGAAATCAATAACCTGCAGTCGTTACTAAGCACGTCGAGAAAAAACGTCAGAAGAGGCATTCCCGACGCCACTTTGGCAGACGCATGTTACGGCGTCGAGAGAGCCATTCCTGTAGTCGTGTTGGTACGGTGTTGGGAATGCCTCTCCCGACTCATTTCTTCCGACGTTGTTCCCGACGCCATGAAAAACATCGACATATCTTTTCTCGACGTTTTTGTGCGTCGGGAGTACCCCCGTCTCTTATAG

Protein sequence

MRWEIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAVVCHLSGYYDFAIFIALNTCWTIVLKKIPPMSNHVLFCYTSLLRRRVPHLVVYLIGRVRVMALVVELFLVSSSVASTVYNANLLSLLKSEINNLQSLLSTSRKNVRRGIPDATLADACYGVERAIPVVVLVRCWECLSRLISSDVVPDAMKNIDISFLDVFVRREYPRLL

Homology

[Close]

BLAST of MELO3C035675 vs. NCBI nr
Match: KAA0050386.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03398.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-12
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MRWEIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAV-------VCH 56
          +RWEIPF+N SVL++TELK KGKGRRE RR   V SSPPS+PSSL SLAV       +CH
Sbjct: 12 LRWEIPFINDSVLYFTELKPKGKGRRENRRGFAVRSSPPSIPSSLSSLAVIPRRSAAICH 71

[Close]

BLAST of MELO3C035675 vs. NCBI nr
Match: KAA0050659.1 (hypothetical protein E6C27_scaffold673G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-10
Identity = 41/54 (75.93%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 4  EIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAVVCHLSGY 58
          EI F+NVSVLFYTELKTKGK RREKRR   + SS PSV SSL SLA VCHLS Y
Sbjct: 17 EILFINVSVLFYTELKTKGKRRREKRRAFTIRSSSPSVLSSLPSLAAVCHLSLY 70

[Close]

BLAST of MELO3C035675 vs. NCBI nr
Match: KAA0058217.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-06
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1  MRWEIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLS---LAVVCHLSGY 60
          +RWEIPF+  SVL++TELK KGKG RE RR   V SSPP +PSS  S      +CH+   
Sbjct: 13 LRWEIPFIIDSVLYFTELKPKGKGIRENRRDFAVRSSPPFIPSSSPSSRRSVALCHVC-- 72

Query: 61 YDFAIFIALNTCWTIVLKKIPPMSNHVL 86
          Y     + L  C  ++++ +  MS  ++
Sbjct: 73 YGSLCSLILAMCSYLLIECLFSMSTTIM 98

[Close]

BLAST of MELO3C035675 vs. NCBI nr
Match: KAA0033533.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 2  RW--EIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAV 51
          RW  EIPF+  SVL++TE K KGKGRRE  R   V SS PS+PSSL SLAV
Sbjct: 19 RWRREIPFIIDSVLYFTEPKPKGKGRRENHRGFAVCSSSPSIPSSLPSLAV 69

[Close]

BLAST of MELO3C035675 vs. NCBI nr
Match: KAA0066810.1 (Armadillo-like helical [Cucumis melo var. makuwa] >TYK27957.1 Armadillo-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-05
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 104 IGRVRVMALVVELFLVSSSVASTVYNANLLSLLKSEINNLQSLLST 150
           +GRVRVMALVV+LF VSSSVAS VYNANLLSLL+SEINN +  L T
Sbjct: 183 LGRVRVMALVVKLFSVSSSVASAVYNANLLSLLESEINNSKDTLVT 228

[Close]

BLAST of MELO3C035675 vs. ExPASy TrEMBL
Match: A0A5A7U876 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2679G00080 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MRWEIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAV-------VCH 56
          +RWEIPF+N SVL++TELK KGKGRRE RR   V SSPPS+PSSL SLAV       +CH
Sbjct: 12 LRWEIPFINDSVLYFTELKPKGKGRRENRRGFAVRSSPPSIPSSLSSLAVIPRRSAAICH 71

[Close]

BLAST of MELO3C035675 vs. ExPASy TrEMBL
Match: A0A5A7UAX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001380 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-11
Identity = 41/54 (75.93%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 4  EIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAVVCHLSGY 58
          EI F+NVSVLFYTELKTKGK RREKRR   + SS PSV SSL SLA VCHLS Y
Sbjct: 17 EILFINVSVLFYTELKTKGKRRREKRRAFTIRSSSPSVLSSLPSLAAVCHLSLY 70

[Close]

BLAST of MELO3C035675 vs. ExPASy TrEMBL
Match: A0A5A7UU01 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005400 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 1  MRWEIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLS---LAVVCHLSGY 60
          +RWEIPF+  SVL++TELK KGKG RE RR   V SSPP +PSS  S      +CH+   
Sbjct: 13 LRWEIPFIIDSVLYFTELKPKGKGIRENRRDFAVRSSPPFIPSSSPSSRRSVALCHVC-- 72

Query: 61 YDFAIFIALNTCWTIVLKKIPPMSNHVL 86
          Y     + L  C  ++++ +  MS  ++
Sbjct: 73 YGSLCSLILAMCSYLLIECLFSMSTTIM 98

[Close]

BLAST of MELO3C035675 vs. ExPASy TrEMBL
Match: A0A5D3DVV9 (Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001610 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-06
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 104 IGRVRVMALVVELFLVSSSVASTVYNANLLSLLKSEINNLQSLLST 150
           +GRVRVMALVV+LF VSSSVAS VYNANLLSLL+SEINN +  L T
Sbjct: 183 LGRVRVMALVVKLFSVSSSVASAVYNANLLSLLESEINNSKDTLVT 228

[Close]

BLAST of MELO3C035675 vs. ExPASy TrEMBL
Match: A0A5A7SSV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00850 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-06
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 2  RW--EIPFLNVSVLFYTELKTKGKGRREKRRFIVVSSSPPSVPSSLLSLAV 51
          RW  EIPF+  SVL++TE K KGKGRRE  R   V SS PS+PSSL SLAV
Sbjct: 19 RWRREIPFIIDSVLYFTEPKPKGKGRRENHRGFAVCSSSPSIPSSLPSLAV 69

The following BLAST results are available for this feature:

BLAST of MELO3C035675 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035675 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050386.1	9.0e-12	66.13	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03398.1 CACTA en-...	[more]
KAA0050659.1	1.7e-10	75.93	hypothetical protein E6C27_scaffold673G001380 [Cucumis melo var. makuwa]	[more]
KAA0058217.1	2.5e-06	42.05	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0033533.1	1.6e-05	64.71	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ95656.1 CACTA en-...	[more]
KAA0066810.1	1.6e-05	78.26	Armadillo-like helical [Cucumis melo var. makuwa] >TYK27957.1 Armadillo-like hel...	[more]

BLAST of MELO3C035675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U876	4.4e-12	66.13	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UAX4	8.2e-11	75.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UU01	1.2e-06	42.05	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DVV9	7.9e-06	78.26	Armadillo-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3...	[more]
A0A5A7SSV3	7.9e-06	64.71	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C035675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035675.1	MELO3C035675.1	mRNA