MELO3C035667.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C035667.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Cleavage and polyadenylation specificity factor subunit 2
Location	chr12: 18087984 .. 18089710 (+)
RNA-Seq Expression	MELO3C035667.jh1
Synteny	MELO3C035667.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACTCACGTGGAGTTTCAGTGGCCACTCCGCTGTTAACATCAGAAATTCGAAGATCGTCGTGTTTGGTGGCCTCGTCGACAAGAAATTTATAAGCGATATTGCCGTTTTATGACATCGGTACTTATGCCTTTTACTTTCTCATTTACAGAATTGTACTGCTTTGCTACTTTCTTCATCGCTATGTATATAATTTTGGTCAGATAGTTCGCTGCATCATCATTTCCATAGTCTGATCGATCTTCTGTTTGTGTTTATTTTTAACATGGATTGGAGTTGTATTTTGAGTAGTAAACACGTTTCTTAATCCGATTTTTATTATTTTAATTTTTCTTGATATTGTAAATCGATGTTACCGACTATGGAGTTAAATTATTATGAGACCAGTTTATGTATTGTTTATGCCTCAAAACTTTTCTTTTATGGAGATTTATTCACTACAAATTTTGCGATAGCTGTAGAGATCGGTTAGGACGAAGATTTGATGTAAAGGATGTTGCTCATGTCAAGTTTGACAGTAAGTTGATCTTTGGTTAAATTTCTGTTAAGGTTTATATTGTTCGGCTTAAGTCATACAAATGTATATTTAATGTTACTGTAACCAGTATATATATAGATATATTCAGGTCCATCACTTTTTTCTTCAAATGCTTAATTTTGCTTTTGATCGATCATCTTTCCTTCGATAAATATGATGATACAATCAAGTTATTTGAAACAATACTCGCCCACGTTGCAATATTGAAGCTTGTATGGTGTTTTCTTACAAATGCACTTGTGTTATGCATGAATAAGCATGTGCCTTTATAAGTATAGATTGTTGTGCATGAATAAGCACGTGCTTATATAAGTATAGATTGCAGGAAAAAAGTTTTGTTCAACTAAGCTAAGTTGGTATGTTATGAGAATTCTCTGAGTTGATCAGATTTTAAATTTCCTTATCCCATGTACTTGCCATAGTTTTTTGTTGTTTCAGTATACATGTTCTTGTTACAACAAAAATACTTTAATCAATAATTGAACTGATTGATTTTGCTTAGTTATTTACATTGTTATTCGAAGGTTTTGGTGCATTTGAAGGTTGATTTTGGCTCGATCCTTATCCCATGTATTTGAAGGTTGATTTTGGCTCGATGCTAAAGTAGGGAAGACTAAGAATGGAACGTTATCTTTATTTCCTCTCTCAAAGGCTCCTGCGGCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGTCAACTTCAAACAATTTCTTGCCAACAAGGGAATACAGGTACCTTTGCTTATGGACCCCTAGGAAAGAAAACAAATATCTCCTTTTGATATGTGCATGTATGAACTAAAATCTGCAATTTAGTAAGAAAAGCGAACGATATTGCCGTCCTATATGCATTGTAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAAATGCAAGTCAAAAGGTTAGAACTTCTTAGAAAAATGGAGGAAAATAACTAAATAAATTTGAATGTGACTCTTACTGTTGCTTATTGAATCTGAACCAAAGAAATACATATTTACTTTGCTTCTAAGCATAAACACTAAACATAGTACATTCAATTTATGCAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGAGCCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTGTATTCACAATTTTATTTGTTATAA

mRNA sequence

ATGGATTACTCACGTGGAGTTTCAGTGGCCACTCCGCTGTTAACATCAGAAATTCGAAGATCGTCCTGTAGAGATCGGTTAGGACGAAGATTTGATGTAAAGGATGTTGCTCATGTCAAGTTTGACAGGAAGACTAAGAATGGAACGTTATCTTTATTTCCTCTCTCAAAGGCTCCTGCGGCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGTCAACTTCAAACAATTTCTTGCCAACAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAAATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGAGCCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTGTATTCACAATTTTATTTGTTATAA

Coding sequence (CDS)

ATGGATTACTCACGTGGAGTTTCAGTGGCCACTCCGCTGTTAACATCAGAAATTCGAAGATCGTCCTGTAGAGATCGGTTAGGACGAAGATTTGATGTAAAGGATGTTGCTCATGTCAAGTTTGACAGGAAGACTAAGAATGGAACGTTATCTTTATTTCCTCTCTCAAAGGCTCCTGCGGCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGTCAACTTCAAACAATTTCTTGCCAACAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAAATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGAGCCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTGTATTCACAATTTTATTTGTTATAA

Protein sequence

MDYSRGVSVATPLLTSEIRRSSCRDRLGRRFDVKDVAHVKFDRKTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

Homology

[Close]

BLAST of MELO3C035667.jh1 vs. NCBI nr
Match: XP_004140773.1 (cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus] >KGN57386.1 hypothetical protein Csa_010311 [Cucumis sativus])

HSP 1 Score: 182 bits (461), Expect = 1.64e-50
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           VT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. NCBI nr
Match: XP_008439247.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 1.64e-50
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           VT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. NCBI nr
Match: XP_023552428.1 (cleavage and polyadenylation specificity factor subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174 bits (441), Expect = 1.09e-47
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAALPHKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VSDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. NCBI nr
Match: XP_022922464.1 (cleavage and polyadenylation specificity factor subunit 2 [Cucurbita moschata])

HSP 1 Score: 174 bits (441), Expect = 1.09e-47
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAALPHKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VSDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. NCBI nr
Match: KAG7014767.1 (Cleavage and polyadenylation specificity factor subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (441), Expect = 1.35e-47
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRK
Sbjct: 668 KTENGTLSLLPLSKAALPHKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRK 727

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 728 VSDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 767

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot
Match: Q652P4 (Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0569400 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-36
Identity = 74/117 (63.25%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 27  LGRRFDVKDVAHVKFDRKTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQV 86
           + ++    ++A V  +    +  L+L P S  PAAHKSVLVGDLK+ +FKQFLANKG+QV
Sbjct: 623 ISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPAAHKSVLVGDLKLADFKQFLANKGLQV 682

Query: 87  EFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
           EFAGGALRCGEY+TLRK+ +A QK G +G+QQ+VIE PLCEDYYKI++LLYSQFYLL
Sbjct: 683 EFAGGALRCGEYITLRKIGDAGQK-GSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot
Match: Q9LKF9 (Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CPSF100 PE=1 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-32
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLR 103
           KT+    SL P+  A + HK VLVGDLK+ +FKQFL++KG+QVEFA GGALRCGEYVTLR
Sbjct: 639 KTERDMRSLLPMPGAASPHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLR 698

Query: 104 KVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
           KV    QKGG SG QQ++IE PLCEDYYKI+D LYSQFYLL
Sbjct: 699 KVGPTGQKGGASGPQQILIEGPLCEDYYKIRDYLYSQFYLL 739

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot
Match: Q10568 (Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 49  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNAS 108
           TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+     
Sbjct: 699 TLEPLPPHEVP-GHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 758

Query: 109 QKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
                + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Sbjct: 759 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot
Match: Q9P2I0 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 49  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNAS 108
           TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+     
Sbjct: 699 TLEPLPPHEVP-GHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 758

Query: 109 QKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
                + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Sbjct: 759 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot
Match: O35218 (Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 49  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNAS 108
           TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+     
Sbjct: 699 TLEPLPPHEVP-GHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 758

Query: 109 QKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
                + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Sbjct: 759 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LBF9 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_3G182220 PE=3 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.94e-51
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           VT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AXY2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis melo OX=3656 GN=LOC103484088 PE=3 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.94e-51
Identity = 90/100 (90.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           VT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL
Match: A0A6J1E3G2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111430467 PE=3 SV=1)

HSP 1 Score: 174 bits (441), Expect = 5.28e-48
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRK
Sbjct: 639 KTENGTLSLLPLSKAALPHKSVLVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRK 698

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 699 VSDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 738

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CHT3 (Cleavage and polyadenylation specificity factor subunit 2 OS=Momordica charantia OX=3673 GN=LOC111011537 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.38e-47
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM ++KQFLA+KGIQVEFAGGALRCGEYVT+RK
Sbjct: 637 KTENGTLSLLPLSKAALPHKSVLVGDLKMADYKQFLASKGIQVEFAGGALRCGEYVTIRK 696

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V +ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 697 VADASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 736

[Close]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CGU1 (Cleavage and polyadenylation specificity factor subunit 2 OS=Momordica charantia OX=3673 GN=LOC111011537 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.39e-47
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRK 103
           KT+NGTLSL PLSKA   HKSVLVGDLKM ++KQFLA+KGIQVEFAGGALRCGEYVT+RK
Sbjct: 638 KTENGTLSLLPLSKAALPHKSVLVGDLKMADYKQFLASKGIQVEFAGGALRCGEYVTIRK 697

Query: 104 VTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 143
           V +ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Sbjct: 698 VADASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 737

[Close]

BLAST of MELO3C035667.jh1 vs. TAIR 10
Match: AT5G23880.1 (cleavage and polyadenylation specificity factor 100 )

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-34
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 44  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLR 103
           KT+    SL P+  A + HK VLVGDLK+ +FKQFL++KG+QVEFA GGALRCGEYVTLR
Sbjct: 639 KTERDMRSLLPMPGAASPHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLR 698

Query: 104 KVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL 144
           KV    QKGG SG QQ++IE PLCEDYYKI+D LYSQFYLL
Sbjct: 699 KVGPTGQKGGASGPQQILIEGPLCEDYYKIRDYLYSQFYLL 739

The following BLAST results are available for this feature:

BLAST of MELO3C035667.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140773.1	1.64e-50	90.00	cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus] >KGN...	[more]
XP_008439247.1	1.64e-50	90.00	PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis me...	[more]
XP_023552428.1	1.09e-47	86.00	cleavage and polyadenylation specificity factor subunit 2 [Cucurbita pepo subsp....	[more]
XP_022922464.1	1.09e-47	86.00	cleavage and polyadenylation specificity factor subunit 2 [Cucurbita moschata]	[more]
KAG7014767.1	1.35e-47	86.00	Cleavage and polyadenylation specificity factor subunit 2 [Cucurbita argyrosperm...	[more]

BLAST of MELO3C035667.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q652P4	6.1e-36	63.25	Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza sativa subsp....	[more]
Q9LKF9	1.1e-32	69.31	Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thalian...	[more]
Q10568	9.7e-10	35.79	Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 ...	[more]
Q9P2I0	9.7e-10	35.79	Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=960...	[more]
O35218	9.7e-10	35.79	Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=100...	[more]

BLAST of MELO3C035667.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF9	7.94e-51	90.00	Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis sativus OX=...	[more]
A0A1S3AXY2	7.94e-51	90.00	Cleavage and polyadenylation specificity factor subunit 2 OS=Cucumis melo OX=365...	[more]
A0A6J1E3G2	5.28e-48	86.00	Cleavage and polyadenylation specificity factor subunit 2 OS=Cucurbita moschata ...	[more]
A0A6J1CHT3	1.38e-47	85.00	Cleavage and polyadenylation specificity factor subunit 2 OS=Momordica charantia...	[more]
A0A6J1CGU1	1.39e-47	85.00	Cleavage and polyadenylation specificity factor subunit 2 OS=Momordica charantia...	[more]

BLAST of MELO3C035667.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23880.1	7.6e-34	69.31	cleavage and polyadenylation specificity factor 100	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025069	Cleavage and polyadenylation specificity factor 2, C-terminal	PFAM	PF13299	CPSF100_C	coord: 42..140 e-value: 1.1E-17 score: 64.7
IPR027075	Cleavage and polyadenylation specificity factor subunit 2	PANTHER	PTHR45922	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2	coord: 42..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035667.jh1.t1	MELO3C035667.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex