MELO3C035640 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035640
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein CLAVATA 3
Location	chr12: 15212285 .. 15213586 (-)
RNA-Seq Expression	MELO3C035640
Synteny	MELO3C035640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGGTTCTCTTCATTCTCCTTTTCATATTTTCAATTTTTTTTCATACTTTACCTCATTATATTATATTCATATTCATCTACCGTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGGTAAGATCTTAGGCTAGCTAGAGAAGGATGATGAATTTTTCATAATGGGTATAGAATTAAGTTTATAGCTTCTTCTATTGTAAATTAAATACACTACGTTGATCTTTCGAGGAAGTATTGTCAATCTTATTCTATCGACCCTAAAATTGGAAATCTGTGAATTTTCAAATGAGCATATGTTTCTTTTCTCACTGTTCTATTATACTAAATTTGTTAGGGAATGTTTGTTCTATTTTATGAGAATTTGTTGTTTGTATTTTTGTGTTATCAATACTTTTATCATCACACTAGTTTTTTCTATTTAAAATTATTATTTAATGTGTGGATCACACAATATTCTTATAAGATATTTACCTGACAAGTAGTAATTGAAATAGTACCATGCAACATATATATATATGAAAACAAAATCATATTAATATACATCCTCTCACTCATTACTCAAAAAATAAAATAAAAATATTGTAAAAAAAATAGTAACAAAAACTTATCGTGACAAATTATTATTAGTCCACGATGCGAGTGGTGGATAGCGTCACAAGATAGATTGTTTATTGTTTTGAATTATTTACAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACCATTAAAACGCTGTCGTATTATTCCAACTTCTAATATATCTTCACATCTCCATGAGGAGAAAGATTTTGAAAGTAGGGGTTTTTGGCTGATCCCAACAACAAAACTAAAACCTACAGATCTTTTTTTTTTTCTTTTTGGGTTTTCTTTGATTATTATTTTGTCTGTTTGTCTTTTTTCTTTTTATGAATTTTGAATTTTTATATCATATATGAATGGATGATCGTGTTCCCTGTTCATATATGTTATATGAAAATTGTAGCCTTGAACCTTTATCGTGAAAGATCTTTAATTAATGTTCTCC

mRNA sequence

CAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACCATTAAAACGCTGTCGTATTATTCCAACTTCTAATATATCTTCACATCTCCATGAGGAGAAAGATTTTGAAAGTAGGGGTTTTTGGCTGATCCCAACAACAAAACTAAAACCTACAGATCTTTTTTTTTTTCTTTTTGGGTTTTCTTTGATTATTATTTTGTCTGTTTGTCTTTTTTCTTTTTATGAATTTTGAATTTTTATATCATATATGAATGGATGATCGTGTTCCCTGTTCATATATGTTATATGAAAATTGTAGCCTTGAACCTTTATCGTGAAAGATCTTTAATTAATGTTCTCC

Coding sequence (CDS)

ATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSSFLSLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of MELO3C035640 vs. NCBI nr
Match: KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 98/107 (91.59%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MASPSPSSFLSLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVE 60
           MASPSPSSFLSLL LFFFLAH LFSSDYNYCCWRVG+CR VSGKLSVSRALHMSRKM+VE
Sbjct: 3   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 62

Query: 61  MKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           MKKEMEEG+KGGKRW T+AEWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 63  MKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109

[Close]

BLAST of MELO3C035640 vs. NCBI nr
Match: XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 8.0e-30
Identity = 80/115 (69.57%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MASPSPSSFL------SLLFLFFFLAHSLFSSDYNYCCWRVG--QCRCVSGKLSVSRALH 60
           MA PS S F+      SLL L FF    LFSSDY YCCWRV   +CRCVSGK  VSRAL 
Sbjct: 1   MALPSSSKFISSFAFFSLLLLIFF----LFSSDY-YCCWRVARCRCRCVSGKPPVSRALQ 60

Query: 61  MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           +SRKM+ EMKKEMEEG  G KRW    EWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 61  ISRKMLQEMKKEMEEGVDGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110

[Close]

BLAST of MELO3C035640 vs. NCBI nr
Match: KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-22
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 53  MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 1   MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of MELO3C035640 vs. NCBI nr
Match: KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 5   SPSSFL-SLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVEMKK 64
           +PS+ + SLL L FFL+H+  S+        + + R V     + RAL  +RKM+ EM K
Sbjct: 2   APSNLIFSLLLLIFFLSHNFSSAS------TLTRRRSVPDTPPLLRAL-QTRKMLREMVK 61

Query: 65  EMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           E+E    GG+R R   EW+QL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 62  ELEV--DGGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96

[Close]

BLAST of MELO3C035640 vs. NCBI nr
Match: MBA0829931.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 44/105 (41.90%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 10  LSLLFLFFFLAHSLFSSDY------NYCCWRVGQ--CRCVSGKLSVSRALHMSRKMIVEM 69
           LSL F FF LA+  F  D+      ++ C+R+      CVSG          +RK++   
Sbjct: 33  LSLFFSFFTLAYLSFRLDFRMSISLSFWCFRLWNFLTGCVSGHGCFHEKPAQNRKILHAD 92

Query: 70  KKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRT 107
            KE      G         WE L  VPSGPDPLHHNGGSPKKPRT
Sbjct: 93  LKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 136

[Close]

BLAST of MELO3C035640 vs. ExPASy TrEMBL
Match: A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 53  MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 1   MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of MELO3C035640 vs. ExPASy TrEMBL
Match: A0A7J9J6C1 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014495 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 44/105 (41.90%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 10  LSLLFLFFFLAHSLFSSDY------NYCCWRVGQ--CRCVSGKLSVSRALHMSRKMIVEM 69
           LSL F FF LA+  F  D+      ++ C+R+      CVSG          +RK++   
Sbjct: 33  LSLFFSFFTLAYLSFRLDFRMSISLSFWCFRLWNFLTGCVSGHGCFHEKPAQNRKILHAD 92

Query: 70  KKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRT 107
            KE      G         WE L  VPSGPDPLHHNGGSPKKPRT
Sbjct: 93  LKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 136

[Close]

BLAST of MELO3C035640 vs. ExPASy TrEMBL
Match: A0A5B6UEZ7 (Protein CLAVATA 3 OS=Gossypium australe OX=47621 GN=EPI10_018487 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.6e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFQEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640 vs. ExPASy TrEMBL
Match: A0A2P5Y0N4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G103400v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640 vs. ExPASy TrEMBL
Match: A0A5D2P1I2 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G119400v1 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

The following BLAST results are available for this feature:

BLAST of MELO3C035640 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652825.1	2.9e-48	91.59	hypothetical protein Csa_022700, partial [Cucumis sativus]	[more]
XP_038877536.1	8.0e-30	69.57	protein CLAVATA 3 [Benincasa hispida]	[more]
KAA0054350.1	4.7e-22	98.18	protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu...	[more]
KAG6583691.1	2.0e-12	51.92	hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
MBA0829931.1	6.1e-06	41.90	hypothetical protein [Gossypium armourianum]	[more]

BLAST of MELO3C035640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGG1	2.3e-22	98.18	Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00...	[more]
A0A7J9J6C1	3.0e-06	41.90	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014495 PE=4 S...	[more]
A0A5B6UEZ7	6.6e-06	47.89	Protein CLAVATA 3 OS=Gossypium australe OX=47621 GN=EPI10_018487 PE=4 SV=1	[more]
A0A2P5Y0N4	8.6e-06	47.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G103400v1 PE...	[more]
A0A5D2P1I2	8.6e-06	47.89	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G119400v1 P...	[more]

BLAST of MELO3C035640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035640.1	MELO3C035640.1	mRNA