MELO3C035639 (gene) Melon (DHL92) v4

Overview
NameMELO3C035639
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag-protease polyprotein
Locationchr12: 15146417 .. 15150253 (+)
RNA-Seq ExpressionMELO3C035639
SyntenyMELO3C035639
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCGCCCGCCTTCCTCAATCTTCTTCTTCTTTCCGTTCAACTTCGACGAACAGCTGCGTTCAATCCTTTCTGTCTTCCTCTTTCAACTGTAGATCCGAATGCCCGACCATCGTTTGACCCGCCGCCAATCCTTTTGTTTTTCCGTTCGACGCCAACCCATCGCCGCCTCCAATCCTTGTGTGTTCCTCTTCCAGCCATAGATCCGAACGCCATCGACCGCCCCCGACCATTGTCCGGTCGCGTACGCCCAGTCGTCGCCGTCGTCGGGTCTTCTTCTCCCACCTTCCACCAGCTTCACGCTGCACACCATACCCGAGCCAACCAAGCTGACCCGACCCGAGCCATCCTCTCTTTCAATTCGACCCGCAAACCGAGGTGCAAACCAAGATGTTGAGCCGAGCCGAGTCGCGAGCCGCGAGCCGAGGATTGAACCGAGCCGCAAGTCGAGGATTGAGCCGAGCCGCGAGCCGAGCTGTGAGCTAAGAGCTGAGCCGAGTCGAGCTGCGATCCAAGCCGAGCCGAGCTGCAGTCGAAGTCGAGCCGCAAGCTAATCCAAGCCGAGCCAAGCCGCCTCCAAGCCAAGTCGAACTCCCTGTTCACCGAGCCACCTAAGCCTTTTTCCCTCCACATCGGGTCACGGTGAGTCTTCGGTAAGGATTATTTAGTGAGTTTCCTAATGTTGCTATAGCCGGTTCGAGTATAGATATTGGAATAAAACATGGAACTACATTTCGTTCCTTGAAGGTGTTAGAGAGTTGACCCTCGAGTTCTTGGGTTTCACGACAGGCTTAATTGGAGATAACTCTCCTTTACTCGGGTATGTCGACGGATGTTGTTTAGAACAATTTAAAAGTTACTTTTACTAGTGTCATCGTTTAAATCCTTATGATTTTGTTTAGGTGGATTCGTTGGACGTGGACTCGATCAAGGAGTATAGCCAAATTTCAGGTAAGGGATTTCTTACTACTGGACCTCGGATCGAGACTAGAAACGTAGTAACCCACATGGGAATTATACGATAGTAACTGTACTAAATTGATTGACCCATGCTTGACTAGTACATATCACTTATATGCTCTTGACTGATTAAAGGTAATGTGATCATTAGTTGTATCCTATGTGCTTATATACGTTAATGAGTTGTTTCTGCGGATAGGCACCGATGCCCAGATGTTCTGTGTATTGTAGTTATGTTGATGGGCTATGTTGTGAACTGGAATAGTATGTCGATGGATTATGAAATCTTAATGTTATGTAAAGTTAAGGTCTGTTGTCGGGTTACTGGTTATGGAGTTATGTCGTGGAGGGACTAAGAGTTCAAAAACCTCTTGTGTAAGTTGTGTAGACGTTGTTGATCTGTGCTGTGGCTTGAATGTGATTGTTATGCATAATATGGATGTTATGCATTACATAGATTACCTGTAGATGCACTCGGGTTTGAACTGAGACGAGGTATCGTCAGGTGATTTTACAAGGTGATGATATGACTAGTTGACTGGATTTAAAGAAATGTCACGATGACGTGTGAATTAGATATTCATATAGCGACTGAGGAGACAGTTGTTTGAACCTAAACAGTTTGACTGGCTAAGCTTATAACTGAACCGTTAACTTAAACGTTATTGTGATGTGACTGTTGTAGATGGTTTAGTATAGACTGTGGGGTAATGGTTAGCTTTATTATGGGGTAGCGTACCTTACAGGCACGGTGTCCTTCAGGATTCCTCGACTGATATGTGTATCCTTCGGGATCACGAGAATTATATGTGCATCCTTCGGGATCACTAGACTGATATGTGTATCCTTCGGGATCACGAGACTGATATGTGCATCCTTCGGGATCACAAGACTGATATGTGCATCCGACGGAATCACTAGACTAATTGATGTGTGCGTTCTATGGAACCACTAGACTGTTTATGTAGGATACCCCTTAATAGGAAGCTAACTGTTATTATCCTAGCGGGCCCAGTAGTGGGTCCCTTACTGGGTATATGCTTATACTCACCCTTTTCTCTTTACTTTTTTTCAGGTAAGGGTATGGCAAGGGGCAGACCGGCGAGGGGCAAGAAGGATGAGTGAAGGCCATATGGACGCGTCTAGTTTCTTTATGCTTCCGCTGACGTATTTGTTAATTTCTATTTCTTTTGAGAATTTAAAGGAGTCATGGTTAGAATATTTGATTGGTGGTTTTTTTTTTATGATTTTGTGAACTATATTTTGGAACTCTTGGGAACGTGATTTAAAATAGGACCCGAAACTACTTTTGTGATATTTTAAATATTTTTAATGAATCGTAATCGATCTTTTATGAGCTTGTGTGTTTTACCGTCGAGTCTTAGCAGTACGTAGTGACCTCAGCTTAGTCCGAAAAGTTGGGTCGTTACGAACAATGGTGGAGAAGGGTTTAGAAATTGGAAACCCAAAAAGGGATTTGGTTATTAGATTTGTTTGGGTGTAGGTGTCGTGGATTTGTACCCAATAGAAGGAATGGCAAGGGAAGATTGAGAAGAGGGGAAGGTAAAAGCAGATGGAGTGGGAGGAGAACGAAATAACATGGCATTAAAAAGTTAGGCAGGACTTCAAACTAGATCTGAGTTGGAACGGAGCTGATGAAGGTGAACGGTGGAGCTTCGACATCTGCGACAATTATGAGCAGTGGAGATTGAAGATCAGAGTTGCGGAGAGATGGAGCATGAAGGGAGATGAGTATCATGCCACCAATAGAGAAGATCAATGGAACTTCAATGTAAGGAATATGGAAAGGAAAAGTGAGACTTAGAGTTCAGAGTTAGTTTTTTTTTTTTTCATATCATTTACTTATAATTAAGCAAAGAGGGAAACAAAATCTGGATGGGAGGAAAAAAATTTAAAAAATAAATTAAATTTATTTTGATGTGTCTTTAACGTCGTTTCAAAAGAAAACTATTTTTAATGTCATTTTAAAACCGACATTGTACCTTAATCTTTGATGTCAGTTTAAAACAAACATTAAACCTCCATATTTTAGAAGCTGACATTAAACATTTATTTTCATTTTTTCCAACCGACATTATAGTCTATATTTATTTTAGTGATAAATATGTATTATTAAAAAATAGAGTAGGTACAGAAATAGTTTATTGAAAATTTAAAGGAATATACGTAGATGCATAGTGGCAATAGCCTAATATATTAATAACATTAAAAAATGTTATTTTCATTCTAATTTAATTTGCACGGTTTATGTATTAGATAATCTGAAACAAATTTAAAATAGACTCCATTAGGGAAATTTAAATAAATATTGTAGTTTTAGAAAATAATTATTATACATTGTAGTTTTGAAAATATTTAGAAGAATGTGGTAGTTTGAGTTTCTCTCTCCAATGTCTTGGGTTGAACCTAAGACATTGCTAATACCTTTTTTTATTTAAATTTCTTTTCTCCCTTTGTATTCATTTTAATAGTTTTTTCAAACAATTTAAATTTTGTTATTGCTCTTCAATATTAAAATTGATATGAATATTTCTAAATAATTAAATAATTAGATGAACCGTTTTTAATAATGATGCGTAATTAAAAAATGAAATATAAATTAAAATAATTTATAATAACCAAATTACATTTATTTGATTGATAAAAGAAAATCAATGTGTTCCACAACTCGGACGTCGTCGATTTCGAGCTGGTTGTCAACGTCGACTCTGAACTCTATGTTGTTCTCGGTCCTCTTGGTTCTCTGGTTCTTGTTGGTACTCTTGTCGATCTGATACATCTGCAGGTGCTTCATGATACAGATATTGGTTATGTTCCCCATAGCCACGTCCATGTCCATGCATGTAAGAATTAG

mRNA sequence

ATGCCACCGCCCGCCTTCCTCAATCTTCTTCTTCTTTCCGTTCAACTTCGACGAACAGCTGCGTTCAATCCTTTCTGTCTTCCTCTTTCAACTGTAGATCCGAATGCCCGACCATCGTTTGACCCGCCGCCAATCCTTTTGTTTTTCCGTTCGACGCCAACCCATCGCCGCCTCCAATCCTTGTGTGTTCCTCTTCCAGCCATAGATCCGAACGCCATCGACCGCCCCCGACCATTGTCCGGTCGCTTAAGGTCTGTTGTCGGGTTACTGGTTATGGAGTTATGTCGTGGAGGGACTAAGAGTTCAAAAACCTCTTGTGTAAGTTGTGTAGACGTTGTTGATCTGTGCTGTGGCTTGAATGACTTCAAACTAGATCTGAGTTGGAACGGAGCTGATGAAGGTGAACGGTGGAGCTTCGACATCTGCGACAATTATGAGCAGTGGAGATTGAAGATCAGAGTTGCGGAGAGATGGAGCATGAAGGGAGATGAGTATCATGCCACCAATAGAGAAGATCAATGGAACTTCAATAAAATCAATGTGTTCCACAACTCGGACGTCGTCGATTTCGAGCTGGTTGTCAACGTCGACTCTGAACTCTATGTTGTTCTCGGTCCTCTTGGTTCTCTGGTTCTTGTTGGTACTCTTGTCGATCTGATACATCTGCAGGTGCTTCATGATACAGATATTGGTTATGTTCCCCATAGCCACGTCCATGTCCATGCATGTAAGAATTAG

Coding sequence (CDS)

ATGCCACCGCCCGCCTTCCTCAATCTTCTTCTTCTTTCCGTTCAACTTCGACGAACAGCTGCGTTCAATCCTTTCTGTCTTCCTCTTTCAACTGTAGATCCGAATGCCCGACCATCGTTTGACCCGCCGCCAATCCTTTTGTTTTTCCGTTCGACGCCAACCCATCGCCGCCTCCAATCCTTGTGTGTTCCTCTTCCAGCCATAGATCCGAACGCCATCGACCGCCCCCGACCATTGTCCGGTCGCTTAAGGTCTGTTGTCGGGTTACTGGTTATGGAGTTATGTCGTGGAGGGACTAAGAGTTCAAAAACCTCTTGTGTAAGTTGTGTAGACGTTGTTGATCTGTGCTGTGGCTTGAATGACTTCAAACTAGATCTGAGTTGGAACGGAGCTGATGAAGGTGAACGGTGGAGCTTCGACATCTGCGACAATTATGAGCAGTGGAGATTGAAGATCAGAGTTGCGGAGAGATGGAGCATGAAGGGAGATGAGTATCATGCCACCAATAGAGAAGATCAATGGAACTTCAATAAAATCAATGTGTTCCACAACTCGGACGTCGTCGATTTCGAGCTGGTTGTCAACGTCGACTCTGAACTCTATGTTGTTCTCGGTCCTCTTGGTTCTCTGGTTCTTGTTGGTACTCTTGTCGATCTGATACATCTGCAGGTGCTTCATGATACAGATATTGGTTATGTTCCCCATAGCCACGTCCATGTCCATGCATGTAAGAATTAG

Protein sequence

MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQSLCVPLPAIDPNAIDRPRPLSGRLRSVVGLLVMELCRGGTKSSKTSCVSCVDVVDLCCGLNDFKLDLSWNGADEGERWSFDICDNYEQWRLKIRVAERWSMKGDEYHATNREDQWNFNKINVFHNSDVVDFELVVNVDSELYVVLGPLGSLVLVGTLVDLIHLQVLHDTDIGYVPHSHVHVHACKN
Homology
[Close]
BLAST of MELO3C035639 vs. NCBI nr
Match: KAA0054358.1 (hypothetical protein E6C27_scaffold24G00870 [Cucumis melo var. makuwa] >TYK12396.1 hypothetical protein E5676_scaffold302G001790 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-48
Identity = 148/398 (37.19%), Postives = 159/398 (39.95%), Query Frame = 0 

Query: 1   MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS 60
           MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS
Sbjct: 1   MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS 60

Query: 61  LCVPLPAIDPNAIDRPRPLSGRLRSVVGLL------------------------------ 120
           LCVPLPAIDPNAIDRPRPLSGR+R VV ++                              
Sbjct: 61  LCVPLPAIDPNAIDRPRPLSGRVRPVVAVVGSSSPTFHQLHAAHHTRANQADPTRAILSF 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 NSTRKPSRFEYRYWNKTWNYISFLEGVRELTLEFLGFTTGLIGDNSPLLGWIRWTWTRSR 180

Query: 181 ------------------VMELC----------------------------RGGTKSSKT 187
                             V  LC                            R GT S + 
Sbjct: 181 SIAKFQAPMPRCSVYCSYVDGLCCELEYYVVEGLRVQKPLVLPVDALGFELRRGTVSFRI 240

[Close]
BLAST of MELO3C035639 vs. NCBI nr
Match: TYJ98389.1 (hypothetical protein E5676_scaffold232G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-04
Identity = 40/102 (39.22%), Postives = 49/102 (48.04%), Query Frame = 0 

Query: 43  PPILLFFRSTPTHRRL-QSLCVPLP-------------AIDPNAIDRPRPLSGRLRSVV- 102
           PP  L   S  T RR+  S+C P+               +  + +    PL G +R  V 
Sbjct: 72  PPAGLSVVSASTARRIPSSVCCPMQPRGYRASLFGRHRGVMTSVVGVNSPLFGWIRLDVE 131

Query: 103 ---------GLLVMELCRGGTKSSKTSCVSCVDVVDLCCGLN 121
                    G LVMELCRGG K S+TSCV CV VV+LCC LN
Sbjct: 132 LNKDFRYSSGALVMELCRGGIKRSETSCVGCVYVVELCCRLN 173

[Close]
BLAST of MELO3C035639 vs. NCBI nr
Match: TYK18895.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 7.7e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 90  LVMELCRGGTKSSKTSCVSCVDVVDLCCGLN 121
           LVMELCRGGTKSSKTSCV CV  V+LCC  N
Sbjct: 25  LVMELCRGGTKSSKTSCVGCVYAVELCCRPN 55

[Close]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match: A0A5A7UHA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001790 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.5e-49
Identity = 148/398 (37.19%), Postives = 159/398 (39.95%), Query Frame = 0 

Query: 1   MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS 60
           MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS
Sbjct: 1   MPPPAFLNLLLLSVQLRRTAAFNPFCLPLSTVDPNARPSFDPPPILLFFRSTPTHRRLQS 60

Query: 61  LCVPLPAIDPNAIDRPRPLSGRLRSVVGLL------------------------------ 120
           LCVPLPAIDPNAIDRPRPLSGR+R VV ++                              
Sbjct: 61  LCVPLPAIDPNAIDRPRPLSGRVRPVVAVVGSSSPTFHQLHAAHHTRANQADPTRAILSF 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 NSTRKPSRFEYRYWNKTWNYISFLEGVRELTLEFLGFTTGLIGDNSPLLGWIRWTWTRSR 180

Query: 181 ------------------VMELC----------------------------RGGTKSSKT 187
                             V  LC                            R GT S + 
Sbjct: 181 SIAKFQAPMPRCSVYCSYVDGLCCELEYYVVEGLRVQKPLVLPVDALGFELRRGTVSFRI 240

[Close]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match: A0A5D3BH69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001360 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 40/102 (39.22%), Postives = 49/102 (48.04%), Query Frame = 0 

Query: 43  PPILLFFRSTPTHRRL-QSLCVPLP-------------AIDPNAIDRPRPLSGRLRSVV- 102
           PP  L   S  T RR+  S+C P+               +  + +    PL G +R  V 
Sbjct: 72  PPAGLSVVSASTARRIPSSVCCPMQPRGYRASLFGRHRGVMTSVVGVNSPLFGWIRLDVE 131

Query: 103 ---------GLLVMELCRGGTKSSKTSCVSCVDVVDLCCGLN 121
                    G LVMELCRGG K S+TSCV CV VV+LCC LN
Sbjct: 132 LNKDFRYSSGALVMELCRGGIKRSETSCVGCVYVVELCCRLN 173

[Close]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match: A0A5D3D5T9 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001060 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 90  LVMELCRGGTKSSKTSCVSCVDVVDLCCGLN 121
           LVMELCRGGTKSSKTSCV CV  V+LCC  N
Sbjct: 25  LVMELCRGGTKSSKTSCVGCVYAVELCCRPN 55

[Close]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match: A0A5D3DRD9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00240 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-04
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 83  LRSVVGLLVMELCRGGTKSSKTSCVSCVDVVDLC 117
           L+ VVG+ VMELCRGGTKSS+TSCV CV  V+LC
Sbjct: 149 LKFVVGIPVMELCRGGTKSSETSCVDCVYAVELC 182

[Close]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match: A0A5D3BFV3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00210 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.3e-04
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 89  LLVMELCRGGTKSSKTSCVSCVDVVDLCCGLNDF---KLDLSWNGA 132
           +LVMELCRGG KS +TSCV C+  V+LCC LN      +D+  NG+
Sbjct: 35  ILVMELCRGGIKSLETSCVDCIYAVELCCRLNTIVMHNMDVMHNGS 80

The following BLAST results are available for this feature:
BLAST of MELO3C035639 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035639 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054358.11.8e-4837.19hypothetical protein E6C27_scaffold24G00870 [Cucumis melo var. makuwa] >TYK12396... [more]
TYJ98389.12.7e-0439.22hypothetical protein E5676_scaffold232G001360 [Cucumis melo var. makuwa][more]
TYK18895.17.7e-0480.65gag-protease polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UHA58.5e-4937.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BH691.3e-0439.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D5T93.7e-0480.65Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DRD94.9e-0473.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BFV38.3e-0454.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C035639 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035639.1MELO3C035639.1mRNA