MELO3C035619 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035619
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 13792640 .. 13793463 (-)
RNA-Seq Expression	MELO3C035619
Synteny	MELO3C035619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGTTTTAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTGAGTTATGCGTTGCAGAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTTCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGACCACAAATGTACTTGGCGTGTGTGACACGAAAAGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATTAGCTGCACACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGTAAGTAACAACGACATTGTACCTATGAATGCAATTTTGCAAGTAACAGCTGCGACATTTTAATCGTGCATTGTGGTCACAGGGTATTACTACCTGGTTGATGCCGGGTACCCAAATATGGAGGGTTCCTGGCACCATACAGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACATCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGATCGATGGGGGATACTGCGGGGAAAGTCATACTACCCTGTAGGAGTTCAATGTTGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAAGTTGATTCCACCCACGCGACTACTGCCGCCGATGACATACATTACATAGAGACGTCAAATGAGTGGAGTCGACCTTGCAGAAGAAATATTTACTGA

mRNA sequence

ATGGAGGTGGTTTTAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTTCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGACCACAAATGTACTTGGCGTGTGTGACACGAAAAGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATTAGCTGCACACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGGTATTACTACCTGGTTGATGCCGGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACATCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGATCGATGGGGGATACTGCGGGGAAAGTCATACTACCCTGTAGGAGTTCAATGTTGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAAGTTGATTCCACCCACGCGACTACTGCCGCCGATGACATACATTACATAGAGACGTCAAATGAGTGGAGTCGACCTTGCAGAAGAAATATTTACTGA

Coding sequence (CDS)

ATGGAGGTGGTTTTAGGTACACATTTATCTCGAACTACGTACTTCCAACACAACGACAATTGCCTAGGTGCATTAGATGGAACGTACATAAAAGTGAACGTTTCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGACCACAAATGTACTTGGCGTGTGTGACACGAAAAGAGATTTCGTTTACGTACTTGCCGGTTGGGAAGGATTAGCTGCACACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATGGGCTGAAGGTGCCCAAGGGGTATTACTACCTGGTTGATGCCGGAGGCCAACGCTATCACTTGCAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACATCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGATCGATGGGGGATACTGCGGGGAAAGTCATACTACCCTGTAGGAGTTCAATGTTGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAAGTTGATTCCACCCACGCGACTACTGCCGCCGATGACATACATTACATAGAGACGTCAAATGAGTGGAGTCGACCTTGCAGAAGAAATATTTACTGA

Protein sequence

MEVVLGTHLSRTTYFQHNDNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRILRDALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSRPCRRNIY

Homology

[Close]

BLAST of MELO3C035619 vs. NCBI nr
Match: KAA0035701.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.6e-109
Identity = 195/203 (96.06%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 20  NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRI 79
           NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTK DFVYVLAGWEGLAAHSRI
Sbjct: 65  NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKGDFVYVLAGWEGLAAHSRI 124

Query: 80  LRDALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER 139
           LRDALSRPNGLKVPKG  +L    GQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER
Sbjct: 125 LRDALSRPNGLKVPKG--FLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER 184

Query: 140 AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT 199
           AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT
Sbjct: 185 AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT 244

Query: 200 AADDIHYIETSNEWSRPCRRNIY 223
           AADDIHYIETSNEWSRPCRRNIY
Sbjct: 245 AADDIHYIETSNEWSRPCRRNIY 265

[Close]

BLAST of MELO3C035619 vs. NCBI nr
Match: TYK30845.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 397.9 bits (1021), Expect = 5.7e-107
Identity = 192/200 (96.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 23  GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRILRD 82
           GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTK DFVYVLAGWEGLAAHSRILRD
Sbjct: 55  GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKGDFVYVLAGWEGLAAHSRILRD 114

Query: 83  ALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG 142
           ALSRPNGLKVPKG  +L    GQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG
Sbjct: 115 ALSRPNGLKVPKG--FLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG 174

Query: 143 VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD 202
           VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD
Sbjct: 175 VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD 234

Query: 203 DIHYIETSNEWSRPCRRNIY 223
           DIHYIETSNEWSRPCRRNIY
Sbjct: 235 DIHYIETSNEWSRPCRRNIY 252

[Close]

BLAST of MELO3C035619 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 186/209 (89.00%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEGLAA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 5.2e-100
Identity = 185/209 (88.52%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEG AA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 5.2e-100
Identity = 185/209 (88.52%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEG AA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. ExPASy TrEMBL
Match: A0A5A7T271 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G004070 PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 195/203 (96.06%), Postives = 196/203 (96.55%), Query Frame = 0


Query: 20  NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRI 79
           NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTK DFVYVLAGWEGLAAHSRI
Sbjct: 65  NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKGDFVYVLAGWEGLAAHSRI 124

Query: 80  LRDALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER 139
           LRDALSRPNGLKVPKG  +L    GQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER
Sbjct: 125 LRDALSRPNGLKVPKG--FLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIER 184

Query: 140 AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT 199
           AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT
Sbjct: 185 AFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT 244

Query: 200 AADDIHYIETSNEWSRPCRRNIY 223
           AADDIHYIETSNEWSRPCRRNIY
Sbjct: 245 AADDIHYIETSNEWSRPCRRNIY 265

[Close]

BLAST of MELO3C035619 vs. ExPASy TrEMBL
Match: A0A5D3E6B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00400 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 192/200 (96.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 23  GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRILRD 82
           GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTK DFVYVLAGWEGLAAHSRILRD
Sbjct: 55  GALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKGDFVYVLAGWEGLAAHSRILRD 114

Query: 83  ALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG 142
           ALSRPNGLKVPKG  +L    GQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG
Sbjct: 115 ALSRPNGLKVPKG--FLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFG 174

Query: 143 VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD 202
           VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD
Sbjct: 175 VLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAAD 234

Query: 203 DIHYIETSNEWSRPCRRNIY 223
           DIHYIETSNEWSRPCRRNIY
Sbjct: 235 DIHYIETSNEWSRPCRRNIY 252

[Close]

BLAST of MELO3C035619 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.1e-101
Identity = 186/209 (89.00%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEGLAA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.5e-100
Identity = 185/209 (88.52%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEG AA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.5e-100
Identity = 185/209 (88.52%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 19  DNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSR 78
           +NCLGALDGTYIKVNV ASDRARYRTRKGEV TNVLGVCDTK DFVYVLAGWEG AA SR
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSR 221

Query: 79  ILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQEWRGPENAPSTSKEFF 138
           ILRDALSRPN LKVPKGYYYLVDAG            GQRYHLQEWRGPENAPSTSKEFF
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFF 281

Query: 139 NMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINREMTNFDIE 198
           NMKHSSARNVIERAFGVLK RW ILRGKSYYPV VQC TILACCLLHNLINREMTNFDIE
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYYPVEVQCRTILACCLLHNLINREMTNFDIE 341

Query: 199 DNIDEVDSTHATTAADDIHYIETSNEWSR 216
           DNIDEVDSTHATTAADDIHYIETSNEWS+
Sbjct: 342 DNIDEVDSTHATTAADDIHYIETSNEWSQ 370

[Close]

BLAST of MELO3C035619 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-25
Identity = 62/165 (37.58%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 20  NCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGLAAHSRI 79
           +C+G +D  +I V V   ++  +R   G +T NVL        F YVLAGWEG A+  ++
Sbjct: 142 DCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQV 201

Query: 80  LRDALSRPNGLKVPKGYYYLVDAGGQRYHLQEWRGPENAPST-----SKEFFNMKHSSAR 139
           L  AL+R N L+VP+G YY+VD   +  +L  +  P +  ST     +KE FN +H    
Sbjct: 202 LNAALTRRNKLQVPQGKYYIVD--NKYPNLPGFIAPYHGVSTNSREEAKEMFNERHKLLH 261

Query: 140 NVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACCLLHNLINRE 180
             I R FG LK+R+ IL     YP+  Q   ++A C LHN +  E
Sbjct: 262 RAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRLE 304

[Close]

BLAST of MELO3C035619 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-22
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 63  FVYVLAGWEGLAAHSRILRDALSRPNGLKVPKGYYYLVDAG------------GQRYHLQ 122
           F+YVL+GWEG A  SR+L DAL +          +YLVD G            G RYHLQ
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 123 EWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKDRWGILRGKSYYPVGVQCCTILACC 182
           E+ G    P T  E FN++H S RNVIER FG+ K R+ I +    +    Q   +L C 
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 144

Query: 183 LLHNLINREMTNFDIEDNIDEV 193
            LHN + +E  + D  D  DEV
Sbjct: 145 ALHNFLRKECRS-DEADFPDEV 155

[Close]

BLAST of MELO3C035619 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 12 TTYFQHNDNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWE 71
          T  + +  +C+GA+D T+I   VS      +R RKG+++ N+L  C+   +F+YVL+GWE
Sbjct: 16 TRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWE 75

Query: 72 GLAAHSRILRDALSR-PNGLKVPK 95
          G A  S++L DAL+R  N L VP+
Sbjct: 76 GSAHDSKVLNDALTRNSNRLPVPE 99

[Close]

BLAST of MELO3C035619 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-13
Identity = 46/153 (30.07%), Postives = 71/153 (46.41%), Query Frame = 0


Query: 14  YFQHNDNCLGALDGTYIKVNVSASDRARYRTRKGEVTTNVLGVCDTKRDFVYVLAGWEGL 73
           Y+ +    +GA+DGT++ V V    +  Y  R    + N++ +CD K  F Y+  G  G 
Sbjct: 169 YWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGS 228

Query: 74  AAHSRILRDALSRPNGLKVPKG-YYYLVDAGGQ-----------------RYHL-QEWRG 133
              + +L+ A    +   +P    YYLVD+G                   RYH+ Q + G
Sbjct: 229 CYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYG 288

Query: 134 PENAPSTSKEFFNMKHSSARNVIERAFGVLKDR 148
           P   P    E FN  H+S R+VIER F + K++
Sbjct: 289 PR--PRNKHELFNQCHTSLRSVIERTFRIWKNK 319

[Close]

BLAST of MELO3C035619 vs. TAIR 10
Match: AT2G13770.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 35/120 (29.17%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 97  YYLVDAGGQRYH-----LQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKDRWGIL 156
           YYL D    ++      + + RGP+      K+ F MK  + R  +ERAFGVL+ R+ I+
Sbjct: 225 YYLADGIYPKWSTLVQTIHDPRGPK------KKLFAMKQEACRKDVERAFGVLQLRFAIV 284

Query: 157 RGKS-YYPVGVQCCTILACCLLHNLINREMTNFD--IEDNIDEVDSTHATTAADDIHYIE 209
            G S  +   V    + +C ++HN+I  +  + D  IE+ ++        T  DD  + E
Sbjct: 285 AGPSRLWNKTVLHDIMTSCIIMHNMIIEDERDIDAPIEERVEVPIEEVEMTGDDDTRFQE 338

The following BLAST results are available for this feature:

BLAST of MELO3C035619 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035619 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035701.1	3.6e-109	96.06	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
TYK30845.1	5.7e-107	96.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048361.1	1.0e-100	89.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	5.2e-100	88.52	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	5.2e-100	88.52	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]

BLAST of MELO3C035619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T271	1.7e-109	96.06	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3E6B3	2.8e-107	96.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	5.1e-101	89.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	2.5e-100	88.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	2.5e-100	88.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C035619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	2.0e-25	37.58	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G35695.1	7.9e-22	40.85	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	1.4e-13	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	5.1e-13	30.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G13770.1	1.5e-04	29.17	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 25..174 e-value: 2.3E-17 score: 63.1
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 15..201
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 15..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035619.1	MELO3C035619.1	mRNA