MELO3C035599 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035599
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Auxin response factor 11-like
Location	chr12: 12376845 .. 12377258 (-)
RNA-Seq Expression	MELO3C035599
Synteny	MELO3C035599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCATCGAGTAGAGATGCCTTCGCCGAATGCATTTATAGCTTGAATAGCACATTGAAGGCCTCATCAACTGTGATTTCACCGGTGAGAATGCGAGAGGGAGATGCAGAGGATTTTGTTTAGAAGGTGGATGCAGAAGCTGTGAATGTTAAAGGTAGGAGCGGCATTAATAGTCTGGGGTGAGAATGTGAGAGGGAGACGTAGACGAGTTTGTTTAGAAGGAGGGAAATGCAGATGAATTTGTTTCGAAGGGTGGGCGAGCAGAACAACAATGGTGGCAGCAAGCAAATTGGTGGCGATGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGTGATGGTTATTCGAAGAAGAAACGGGCATCGGAGAAGAAATGGATGGATTCCATTTAA

mRNA sequence

ATGTTAGCATCGAGTAGAGATGCCTTCGCCGAATGCATTTATAGCTTGAATAGCACATTGAAGGCCTCATCAACTGTGATTTCACCGATGAATTTGTTTCGAAGGGTGGGCGAGCAGAACAACAATGGTGGCAGCAAGCAAATTGGTGGCGATGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGTGATGGTTATTCGAAGAAGAAACGGGCATCGGAGAAGAAATGGATGGATTCCATTTAA

Coding sequence (CDS)

ATGTTAGCATCGAGTAGAGATGCCTTCGCCGAATGCATTTATAGCTTGAATAGCACATTGAAGGCCTCATCAACTGTGATTTCACCGATGAATTTGTTTCGAAGGGTGGGCGAGCAGAACAACAATGGTGGCAGCAAGCAAATTGGTGGCGATGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGTGATGGTTATTCGAAGAAGAAACGGGCATCGGAGAAGAAATGGATGGATTCCATTTAA

Protein sequence

MLASSRDAFAECIYSLNSTLKASSTVISPMNLFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEKKWMDSI

Homology

[Close]

BLAST of MELO3C035599 vs. NCBI nr
Match: KAA0032120.1 (putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuwa] >TYK08893.1 putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-28
Identity = 77/96 (80.21%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MLASSRDAFAECIYSLNSTLKASSTVISP---MNLFRRVGEQNNNGGSKQIGGDEHNGGV 60
          MLASSRDA AECIYSLNST+K  +TVISP   MNLFRR  EQNNNGGSKQIGG EHNGGV
Sbjct: 1  MLASSRDAVAECIYSLNSTVKDPTTVISPTATMNLFRREDEQNNNGGSKQIGGGEHNGGV 60

Query: 61 DHNSGDKHNGGSDGY------SKKKRASEKKWMDSI 88
          DHNSGDKHNGGSDGY      SKKKRASEKKWM+ I
Sbjct: 61 DHNSGDKHNGGSDGYSKKKRTSKKKRASEKKWMNPI 96

[Close]

BLAST of MELO3C035599 vs. NCBI nr
Match: TYK01040.1 (putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 5.3e-24
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1  MLASSRDAFAECIYSLNSTLKASSTVISPM-----------------NLFRRVGEQNNNG 60
          MLASSRD  AECIYSLNST+KA +TVISP+                 N+FRRVGEQNNNG
Sbjct: 1  MLASSRDVVAECIYSLNSTVKAPATVISPIATRETQTSLFRRREMQTNMFRRVGEQNNNG 60

Query: 61 GSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEKK 83
          GSKQIG DEHNGGV HNSGDKHNGGS+GY +KKRA EKK
Sbjct: 61 GSKQIGSDEHNGGVGHNSGDKHNGGSNGYLEKKRALEKK 99

[Close]

BLAST of MELO3C035599 vs. NCBI nr
Match: TYK18302.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 31 NLFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEKKWMDSI 88
          NLFRRV EQNNNGG+KQIGG  HNGGVDHNSGDKHNGGSDGYS+KK ASEKKW D I
Sbjct: 4  NLFRRVAEQNNNGGNKQIGGSVHNGGVDHNSGDKHNGGSDGYSEKKWASEKKWTDPI 60

[Close]

BLAST of MELO3C035599 vs. NCBI nr
Match: TYK20954.1 (putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 31 NLFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEK 82
          NLFRRVGEQNNNGGSKQIGG EHNG VDHNSGDKHNGGSDGYS+KKR  E+
Sbjct: 4  NLFRRVGEQNNNGGSKQIGGGEHNGSVDHNSGDKHNGGSDGYSEKKRIGEE 54

[Close]

BLAST of MELO3C035599 vs. NCBI nr
Match: KAA0045185.1 (hypothetical protein E6C27_scaffold30G001860 [Cucumis melo var. makuwa] >TYK27367.1 hypothetical protein E5676_scaffold325G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 5.0e-14
Identity = 57/107 (53.27%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MLASSRDAFAECIYSLNSTLKASSTVISP-----------------------------MN 60
           MLASSRDA  ECIYSLNST+KA +TVISP                              N
Sbjct: 1   MLASSRDAVIECIYSLNSTVKAPATVISPTAIVISRRGENVRGRHGRLCLEGGCRSCDAN 60

Query: 61  LFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRA 79
           LFR+V E N NGG KQIGG +      HNSG+KHNGGSDGYS+KKRA
Sbjct: 61  LFRKVSEHNENGGGKQIGGGK------HNSGNKHNGGSDGYSEKKRA 101

[Close]

BLAST of MELO3C035599 vs. ExPASy TrEMBL
Match: A0A5D3CAK9 (Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2374G00040 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 77/96 (80.21%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MLASSRDAFAECIYSLNSTLKASSTVISP---MNLFRRVGEQNNNGGSKQIGGDEHNGGV 60
          MLASSRDA AECIYSLNST+K  +TVISP   MNLFRR  EQNNNGGSKQIGG EHNGGV
Sbjct: 1  MLASSRDAVAECIYSLNSTVKDPTTVISPTATMNLFRREDEQNNNGGSKQIGGGEHNGGV 60

Query: 61 DHNSGDKHNGGSDGY------SKKKRASEKKWMDSI 88
          DHNSGDKHNGGSDGY      SKKKRASEKKWM+ I
Sbjct: 61 DHNSGDKHNGGSDGYSKKKRTSKKKRASEKKWMNPI 96

[Close]

BLAST of MELO3C035599 vs. ExPASy TrEMBL
Match: A0A5D3BPS7 (Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00460 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-24
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1  MLASSRDAFAECIYSLNSTLKASSTVISPM-----------------NLFRRVGEQNNNG 60
          MLASSRD  AECIYSLNST+KA +TVISP+                 N+FRRVGEQNNNG
Sbjct: 1  MLASSRDVVAECIYSLNSTVKAPATVISPIATRETQTSLFRRREMQTNMFRRVGEQNNNG 60

Query: 61 GSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEKK 83
          GSKQIG DEHNGGV HNSGDKHNGGS+GY +KKRA EKK
Sbjct: 61 GSKQIGSDEHNGGVGHNSGDKHNGGSNGYLEKKRALEKK 99

[Close]

BLAST of MELO3C035599 vs. ExPASy TrEMBL
Match: A0A5D3D440 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00080 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.2e-17
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 31 NLFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEKKWMDSI 88
          NLFRRV EQNNNGG+KQIGG  HNGGVDHNSGDKHNGGSDGYS+KK ASEKKW D I
Sbjct: 4  NLFRRVAEQNNNGGNKQIGGSVHNGGVDHNSGDKHNGGSDGYSEKKWASEKKWTDPI 60

[Close]

BLAST of MELO3C035599 vs. ExPASy TrEMBL
Match: A0A5D3DBJ7 (Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1293G00020 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 31 NLFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRASEK 82
          NLFRRVGEQNNNGGSKQIGG EHNG VDHNSGDKHNGGSDGYS+KKR  E+
Sbjct: 4  NLFRRVGEQNNNGGSKQIGGGEHNGSVDHNSGDKHNGGSDGYSEKKRIGEE 54

[Close]

BLAST of MELO3C035599 vs. ExPASy TrEMBL
Match: A0A5A7TUY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00430 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.4e-14
Identity = 57/107 (53.27%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MLASSRDAFAECIYSLNSTLKASSTVISP-----------------------------MN 60
           MLASSRDA  ECIYSLNST+KA +TVISP                              N
Sbjct: 1   MLASSRDAVIECIYSLNSTVKAPATVISPTAIVISRRGENVRGRHGRLCLEGGCRSCDAN 60

Query: 61  LFRRVGEQNNNGGSKQIGGDEHNGGVDHNSGDKHNGGSDGYSKKKRA 79
           LFR+V E N NGG KQIGG +      HNSG+KHNGGSDGYS+KKRA
Sbjct: 61  LFRKVSEHNENGGGKQIGGGK------HNSGNKHNGGSDGYSEKKRA 101

The following BLAST results are available for this feature:

BLAST of MELO3C035599 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035599 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032120.1	2.7e-28	80.21	putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuw...	[more]
TYK01040.1	5.3e-24	69.70	putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuw...	[more]
TYK18302.1	1.1e-16	85.96	disease resistance protein RPP4-like [Cucumis melo var. makuwa]	[more]
TYK20954.1	2.9e-14	88.24	putative tRNA N6-adenosine threonylcarbamoyltransferase [Cucumis melo var. makuw...	[more]
KAA0045185.1	5.0e-14	53.27	hypothetical protein E6C27_scaffold30G001860 [Cucumis melo var. makuwa] >TYK2736...	[more]

BLAST of MELO3C035599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAK9	1.3e-28	80.21	Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. mak...	[more]
A0A5D3BPS7	2.6e-24	69.70	Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. mak...	[more]
A0A5D3D440	5.2e-17	85.96	Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DBJ7	1.4e-14	88.24	Putative tRNA N6-adenosine threonylcarbamoyltransferase OS=Cucumis melo var. mak...	[more]
A0A5A7TUY0	2.4e-14	53.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C035599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035599.1	MELO3C035599.1	mRNA