MELO3C035598 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035598
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Non-LTR retroelement reverse transcriptase-like protein
Location	chr12: 12375944 .. 12376490 (-)
RNA-Seq Expression	MELO3C035598
Synteny	MELO3C035598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATTTATCATTTTTCTCAACCGACATTAAAGCGTATATTTCTTCTAGTGTGGGTAAAAAGCAGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCAATCTTCAGGGCTCGTACTCTGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACATTTTCCCAAGGTATAGGTCGGGAAACAAGCTCGTTGGAGGGATAACTAATGTCAACCCAAAACGGTCCAAAAGATGGCCAATGATTCCAACGAGTAGCGAACACTCGTTTGGTGTCAAAAACCACTGAAATACCCTTCAGGCAAAGGAAATGGGCTGAGCTCGATGACTTTCAGTGTTCGTCCTAAGAAAATGCAAGCGATAATGCCCCAGACCCAGTTTTCTCGTCCTGGAGTAAAAAGCGGTCTCCCAACGGTTTCTTCCTTTTACTTCGTATTGGTCAAAACTCTTTCGATCTTCGGAGTCGTACTCAAAAGATGGTCAATGCTTCCAACAAGTGGCGAACGCTCCTCCATTGTCAAAAACCACTAG

mRNA sequence

ATGTTCATTTATCATTTTTCTCAACCGACATTAAAGCGTATATTTCTTCTAGTGTGGGTAAAAAGCAGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCAATCTTCAGGGCTCGTACTCTGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACATTTTCCCAAGGCAAAGGAAATGGGCTGAGCTCGATGACTTTCAGTGTTCGTCCTAAGAAAATGCAAGCGATAATGCCCCAGACCCAGTTTTCTCGTCCTGGAGTAAAAAGCGGTCTCCCAACGGTTTCTTCCTTTTACTTCGTATTGGTCAAAACTCTTTCGATCTTCGGAGTCGTACTCAAAAGATGGTCAATGCTTCCAACAAGTGGCGAACGCTCCTCCATTGTCAAAAACCACTAG

Coding sequence (CDS)

ATGTTCATTTATCATTTTTCTCAACCGACATTAAAGCGTATATTTCTTCTAGTGTGGGTAAAAAGCAGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCAATCTTCAGGGCTCGTACTCTGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACATTTTCCCAAGGCAAAGGAAATGGGCTGAGCTCGATGACTTTCAGTGTTCGTCCTAAGAAAATGCAAGCGATAATGCCCCAGACCCAGTTTTCTCGTCCTGGAGTAAAAAGCGGTCTCCCAACGGTTTCTTCCTTTTACTTCGTATTGGTCAAAACTCTTTCGATCTTCGGAGTCGTACTCAAAAGATGGTCAATGCTTCCAACAAGTGGCGAACGCTCCTCCATTGTCAAAAACCACTAG

Protein sequence

MFIYHFSQPTLKRIFLLVWVKSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKGNGLSSMTFSVRPKKMQAIMPQTQFSRPGVKSGLPTVSSFYFVLVKTLSIFGVVLKRWSMLPTSGERSSIVKNH

Homology

[Close]

BLAST of MELO3C035598 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-24
Identity = 78/130 (60.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 21   KSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKG-------------NG 80
            K  PPT+SSLC VLVISL IFRARTLRTSTHTPGM+ DTF  G G             NG
Sbjct: 1295 KCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGIGWEASWLEGELCEVNG 1354

Query: 81   LSSMTFSVRPKKMQAIMPQTQFSRPGVKSGLPTVSSFYFVLVKTLSIFGVVLKRWS---- 131
            LSS   S RP K +A MP+TQFSRPG KSG PTVSS   VLV +LSIFG    R S    
Sbjct: 1355 LSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTS 1414

[Close]

BLAST of MELO3C035598 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-12
Identity = 50/109 (45.87%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 40  IFRARTLRTSTHTPGMLPDTFSQG-------------KGNGLSSMTFSVRPKKMQAIMPQ 99
           +  ART RTS HTP MLP TF +G             KGNGL S TF VRPKKM+A +P 
Sbjct: 186 VLSARTPRTSNHTPSMLPHTFYKGISLKVSSFEGELSKGNGLHSRTFDVRPKKMRARIPW 245

Query: 100 TQFSRPGVKSGLPTVSSFYF----------VLVKTLSIFGVVLKRWSML 126
           TQFS PGVKS  PT+SS +           V +K +   G   K W  L
Sbjct: 246 TQFSHPGVKSSPPTISSLWLRSKLVGSRTKVRLKIVQKLGNASKEWRTL 294

[Close]

BLAST of MELO3C035598 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 20 VKSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQG 64
          VKS PPTVSSLCFVL ISLSIF A TLRTSTHTPGMLPDTFSQG
Sbjct: 52 VKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFSQG 95

[Close]

BLAST of MELO3C035598 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 52/122 (42.62%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 19  WVKSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKGNGLSSMTFSV--R 78
           WVKS PPTVSS+C VLVI LSIF A   RTSTHTPGMLPD FS G      S+   +   
Sbjct: 128 WVKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCD 187

Query: 79  PKKMQAIMPQTQFSRPGVKSGLPTVSSFYFVLVKTLSIFGVVLKRWSMLPTSGERSSIVK 138
           PK+ +                                       RW MLPTSG+RSS V+
Sbjct: 188 PKRSE---------------------------------------RWPMLPTSGKRSSDVR 210

[Close]

BLAST of MELO3C035598 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 21  KSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKGNGLSSMTFSVRPKKM 80
           KS PPTVS+LC VLV SLSIF A T RTSTHTPGMLPDTFS+ +   LS +    +    
Sbjct: 309 KSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFLVLG-KLWSP 368

Query: 81  QAIMPQTQFSRPGV--KSGLPTVSSFYFVLV----------KTLSIFGVVL------KRW 139
               P  +     V  +   P  S+    ++          +  S+ G +L      KRW
Sbjct: 369 DGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRW 428

[Close]

BLAST of MELO3C035598 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24
Identity = 78/130 (60.00%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 21   KSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKG-------------NG 80
            K  PPT+SSLC VLVISL IFRARTLRTSTHTPGM+ DTF  G G             NG
Sbjct: 1295 KCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGIGWEASWLEGELCEVNG 1354

Query: 81   LSSMTFSVRPKKMQAIMPQTQFSRPGVKSGLPTVSSFYFVLVKTLSIFGVVLKRWS---- 131
            LSS   S RP K +A MP+TQFSRPG KSG PTVSS   VLV +LSIFG    R S    
Sbjct: 1355 LSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTS 1414

[Close]

BLAST of MELO3C035598 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 50/109 (45.87%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 40  IFRARTLRTSTHTPGMLPDTFSQG-------------KGNGLSSMTFSVRPKKMQAIMPQ 99
           +  ART RTS HTP MLP TF +G             KGNGL S TF VRPKKM+A +P 
Sbjct: 186 VLSARTPRTSNHTPSMLPHTFYKGISLKVSSFEGELSKGNGLHSRTFDVRPKKMRARIPW 245

Query: 100 TQFSRPGVKSGLPTVSSFYF----------VLVKTLSIFGVVLKRWSML 126
           TQFS PGVKS  PT+SS +           V +K +   G   K W  L
Sbjct: 246 TQFSHPGVKSSPPTISSLWLRSKLVGSRTKVRLKIVQKLGNASKEWRTL 294

[Close]

BLAST of MELO3C035598 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 40/44 (90.91%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 20 VKSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQG 64
          VKS PPTVSSLCFVL ISLSIF A TLRTSTHTPGMLPDTFSQG
Sbjct: 52 VKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFSQG 95

[Close]

BLAST of MELO3C035598 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 52/122 (42.62%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 19  WVKSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKGNGLSSMTFSV--R 78
           WVKS PPTVSS+C VLVI LSIF A   RTSTHTPGMLPD FS G      S+   +   
Sbjct: 128 WVKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCD 187

Query: 79  PKKMQAIMPQTQFSRPGVKSGLPTVSSFYFVLVKTLSIFGVVLKRWSMLPTSGERSSIVK 138
           PK+ +                                       RW MLPTSG+RSS V+
Sbjct: 188 PKRSE---------------------------------------RWPMLPTSGKRSSDVR 210

[Close]

BLAST of MELO3C035598 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 21  KSSPPTVSSLCFVLVISLSIFRARTLRTSTHTPGMLPDTFSQGKGNGLSSMTFSVRPKKM 80
           KS PPTVS+LC VLV SLSIF A T RTSTHTPGMLPDTFS+ +   LS +    +    
Sbjct: 309 KSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFLVLG-KLWSP 368

Query: 81  QAIMPQTQFSRPGV--KSGLPTVSSFYFVLV----------KTLSIFGVVL------KRW 139
               P  +     V  +   P  S+    ++          +  S+ G +L      KRW
Sbjct: 369 DGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRW 428

The following BLAST results are available for this feature:

BLAST of MELO3C035598 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	8.4e-24	60.00	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
KAA0040927.1	7.4e-12	45.87	hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061...	[more]
KAA0037172.1	1.6e-11	90.91	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas...	[more]
TYK15439.1	2.8e-11	42.62	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]
TYK22521.1	4.8e-11	41.91	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	4.1e-24	60.00	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3CGX3	3.6e-12	45.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CQ36	8.0e-12	90.91	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3CZ27	1.4e-11	42.62	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3DFP2	2.3e-11	41.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C035598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035598.1	MELO3C035598.1	mRNA