MELO3C035590 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035590
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Location	chr12: 11471303 .. 11474525 (+)
RNA-Seq Expression	MELO3C035590
Synteny	MELO3C035590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTGTACTTAGAAATTTCCAAAAACCACCAAAAAGGCTAAAAAACATGTCTTGACACATGTTGGCACGCAGGGGGTGGGCAGCAGGCATTGGTTGTGTGTGCTGGGTGTCACGAGCATACTTGTCCAAGGTGTCGCTTTGTCTTTACGTCTTATAAGTAGTCTAGGTTATTTCTTTCATTTTCGTGTCGCCGAGCCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCTTGCCAAGGCCAAAAATCTCAATATGTACTATAGGGGGTACCTGAGTAGTCCAACCCCCGCCGAAGCTTTGTCGCATTGCAAGCTAAACTATTTTCTTTGCAATTGACAGTCTTCAATGCTTTCTTTTATGATGTTTTCAACAATTTACTTTCTCTCTCCCATTTTATAAAAACATTTTCTCGAGAATGCGGAGGGAGGCTACATCATACCATGAGTTTGTTCGCGGATTTTGAATATTGAACGACTGACTTGTTGACCGAGCAAAACAAGTGCCGCACAATCCATCGGGCCAAATCAGCTAATTGACAGTAAGATTGAAGTATGTCATCGGCGAATCCATCGGGCAAGGCCTAGAAAGACTGACTAGTAGAGCTAGAAGAGCAGATGCTCTACCTAGCTGAAGTTCCTGACTCCATCTGCTTCTTGGAGTCCCGTCTCAAAGAGATTGCTGAGAAAACTGACACAATCGATGCGATAGCTAGCCGTGTTAAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTCGACACTCTAGAAGGAAACATTGGAAGAATTGTTAACTACGAATATAGGGACAGTTCATCGGGCTTTGTTACCCACATGGAAGAACGTGTCAATGAGCTAGATAGCTCTCAGAAGACACTCTTAGAGATGATAAACGACATGTTGGAGGATTTTCGAGCCACCGTCGATGTCGTCAGAAATGAAATCGCAGATGTGAACGTGAGACTGAATCTCACAGTGCGAGCAATAGCAAACCAAGCTCCAGCTGGAGGAGAAATTTCGGTTAGCAGAGTAAAGATCCCAGAACCAAAGCCCTTCTGTGGGGCAAGAGATGCAAGGGCCCTGAAGAACTACATTTTTGACCTCGAACAGTACTTTAGGGCTACGAACACAATTACTGAGGAAGCCAAAGTTACACTGGTGAACGATGCATCTATCTGAGGATGCCAAGTTATGGTGGAGATCCCGATATGTGGACATGCAAGAAGGACGTACGATAGATACTTGGGATGCCTTGAAGAAAGAACTCCGCTCACAATTCTTCCATGAAAATATTGAGATTTTGGCTCGACGAAAGTTGCATGAGCTGAAACACACCGGTAGTATTCGAGAGTACGTGAAACAGTTTGCGGGCTTGATGTTAGACATTCACAATATGTGGGAGAAAGACAAAGTCTTCTGTTTTGTCGAATGGCTGAAACCGTGGGCTAAGACCAAGTTATATGAATAAAGGGTCCAAGACCTCACGTCAGCGTACGCAGCAGCCGAACGGTTGTTTGATCTGATCAGTGACTCTCAAGATGTGAGACGTCACCAAAGTTCCTTACTTGGAAGGAATAGGAATAGTCGCTCGAGTTCTCCTAAAGCTGTCGGGGGAGATAAACGTTCTGGTAAAGATCGCAGACTTTACCAATCAAATATAGAGATCACATGGCGAAGGCCGAATAATCGAAGCCTACCCAAGCATCCTCTCAGTTGTTTATATGTGAGGGGCCACATCTAGGAAGAGAATGTTCGAATAAAGTCGACTTCCATGCTTTTTCAGGCCTCATTAATCTCGGATTCAGACGATAAGTCGAATCAAGCTAAAGGTGAAGTCAACCAAATAGAAGGATGCGAGAAGCCTAGAATAGGGGCCATAAAGTATCTGTCATCTCTCCAGAAAAAGTCAGGGGAGAGAAACGTGCCAACGAAAAGGGGCTTATTGTATGTTGACACCTGGATCAACAAAAAACAAACTAAGAGCACTATGATTGATTCCAGTGCAACCCATAACTTTATAACAGAGGCAGAAGCCAGACGCCTAAGGCTCCGTTGGGAGAAAGATTCAAGAAGAATGAAGGTCGTGAATTTTGTTGCCCTACCTATCGTCGAACTAGTGAAACGAACGACGATAAAGTTGGGAGGATGGAAAGACCCTGTAGACTTTTTGGTTGTAAAGATGGACGACTTTGATGTAGTGCTGGGAATGGAGTTCCTCCTTGAACATCAAGTTATACCAATGCCCTCAGCCAAATGTCTAGTGATTATCGGATCTTTTCCCATAGTAGTGCAAGCAGATATTTGTCAGCCTAGCGAATTTAAAATGATGTTGACCATGCAACTAGATAAGAATCTCGCCTAAGAGGAACCACCATCTATGGAGATCCCGCTTGGGGCGTTGGAAAAAATGGAGGAGACAGTCCCCAAAGACACTCTGTGTGTCCCTCAGAAGTACCATGGTGGGATGCCTAAAAGTTGGCCCAAGTCCTTGTCGATGCGAAGGATGACCGACCATGGAATAGAATTGCTACCAGAGGCAAAAGTGCCTGCGAAGAATGCTTATCACATGACGTCACCAGAGTTAGCTGTACTTCGAAAACAGTCGAAGATTTTATCAGGTACAAGATTTAGTAGATATGTACAAGCTCTATGGGGAGCCCCAGTCCTTTCTTTAAAGAAGAAGGATAGAAGCATACGACGGTGTATTGACCATTGTATCTAGAATAAATTCATAGTTTGTTGCAACTATCAACTTCTCATGCCCACCAACCTTTTTAACTGCCCATGTGGGGTGAAATATTTCTCGAAGTCAGACATTCGACCAAGGCATTGTCGAGTAAGAGCAACAAAGGCAGAGGGACTCAAAGCAACTTGTGTCACGGGACTTAGAGCATACGAGTTCCTCGTGGTGCCATTTAACCTTGCCGATGCCAAGGGAGGAAAGTATTGTTCTGTGCAGAGACAGATAAATGTGCTGGGTCATGTGGTGGAGTTTCACCAGATTGAGGGGAGGAAGAAGAAGATTACTGCAACGTGTGACGAGAGAATACCGAAATCAGTCATAGAGTTACGCTCATACCCCGGACTGGCCAATAGTAACGGGCAGTTCACAGACGGATTCTTACAAAGAGGAGCAAGCTCGATGACTAAGTTGTTGGAAGAAGAAGACATTCAGTGGGGTGGGAACCTCGAGTGTCAATCCACCTTTGATGGTCCGAAATAA

mRNA sequence

AAAAGTGTACTTAGAAATTTCCAAAAACCACCAAAAAGGCTAAAAAACATGTCTTGACACATGTTGGCACGCAGGGGGTGGGCAGCAGGCATTGGTTGTGTGTGCTGGGTGTCACGAGCATACTTGTCCAAGATGCTCTACCTAGCTGAAGTTCCTGACTCCATCTGCTTCTTGGAGTCCCGTCTCAAAGAGATTGCTGAGAAAACTGACACAATCGATGCGATAGCTAGCCGTGTTAAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTCGACACTCTAGAAGGAAACATTGGAAGAATTGTTAACTACGAATATAGGGACAGTTCATCGGGCTTTGCCTCATTAATCTCGGATTCAGACGATAAGTCGAATCAAGCTAAAGGTGAAGTCAACCAAATAGAAGGATGCGAGAAGCCTAGAATAGGGGCCATAAAAGCATACGAGTTCCTCGTGGTGCCATTTAACCTTGCCGATGCCAAGGGAGGAAAGTATTGTTCTGTGCAGAGACAGATAAATGTGCTGGGTCATGTGGTGGAGTTTCACCAGATTGAGGGGAGGAAGAAGAAGATTACTGCAACGTGTGACGAGAGAATACCGAAATCAGTCATAGAGTTACGCTCATACCCCGGACTGGCCAATAGTAACGGGCAGTTCACAGACGGATTCTTACAAAGAGGAGCAAGCTCGATGACTAAGTTGTTGGAAGAAGAAGACATTCAGTGGGGTGGGAACCTCGAGTGTCAATCCACCTTTGATGGTCCGAAATAA

Coding sequence (CDS)

ATGTTGGCACGCAGGGGGTGGGCAGCAGGCATTGGTTGTGTGTGCTGGGTGTCACGAGCATACTTGTCCAAGATGCTCTACCTAGCTGAAGTTCCTGACTCCATCTGCTTCTTGGAGTCCCGTCTCAAAGAGATTGCTGAGAAAACTGACACAATCGATGCGATAGCTAGCCGTGTTAAAGGATTACCAATACAAGAGTTGTTGGCAAGAGTCGACACTCTAGAAGGAAACATTGGAAGAATTGTTAACTACGAATATAGGGACAGTTCATCGGGCTTTGCCTCATTAATCTCGGATTCAGACGATAAGTCGAATCAAGCTAAAGGTGAAGTCAACCAAATAGAAGGATGCGAGAAGCCTAGAATAGGGGCCATAAAAGCATACGAGTTCCTCGTGGTGCCATTTAACCTTGCCGATGCCAAGGGAGGAAAGTATTGTTCTGTGCAGAGACAGATAAATGTGCTGGGTCATGTGGTGGAGTTTCACCAGATTGAGGGGAGGAAGAAGAAGATTACTGCAACGTGTGACGAGAGAATACCGAAATCAGTCATAGAGTTACGCTCATACCCCGGACTGGCCAATAGTAACGGGCAGTTCACAGACGGATTCTTACAAAGAGGAGCAAGCTCGATGACTAAGTTGTTGGAAGAAGAAGACATTCAGTGGGGTGGGAACCTCGAGTGTCAATCCACCTTTGATGGTCCGAAATAA

Protein sequence

MLARRGWAAGIGCVCWVSRAYLSKMLYLAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNYEYRDSSSGFASLISDSDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVVEFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEEDIQWGGNLECQSTFDGPK

Homology

[Close]

BLAST of MELO3C035590 vs. NCBI nr
Match: KAA0035436.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK25716.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-52
Identity = 105/128 (82.03%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           SD +    +    + EG +   +  ++AYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV
Sbjct: 70  SDIRPRHCRVRATKAEGLKATCVTGLRAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 129

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED
Sbjct: 130 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 189

Query: 220 IQWGGNLE 228
           IQWGGNLE
Sbjct: 190 IQWGGNLE 197

[Close]

BLAST of MELO3C035590 vs. NCBI nr
Match: TYK11803.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-42
Identity = 163/537 (30.35%), Postives = 181/537 (33.71%), Query Frame = 0


Query: 25  MLYLAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNY 84
           MLYLA+VPDS+ FLESR +EIAEKTDTID +ASRV+GLPIQELLARVDTLEGNIGR VNY
Sbjct: 1   MLYLAKVPDSVRFLESRFEEIAEKTDTIDTVASRVEGLPIQELLARVDTLEGNIGRTVNY 60

Query: 85  EYRDSSSGF--------------------------------------------------- 144
           EY DSSSGF                                                   
Sbjct: 61  EYGDSSSGFVAHMEEHTEPHNASNANQAPAGGAILVSIVEIPEPKPFCAARDAKGLKPWA 120

Query: 145 ----------------------ASLISD-------------------------------S 204
                                 ++LISD                               S
Sbjct: 121 KTKLYEQKVQDLTSAYAATERLSNLISDSQDVRRHQSSSPQRNRNSRSSSSKAVGGDKHS 180

Query: 205 DDKSNQAKGEVNQIEGCEKPRIGAIK---------------------------------- 237
           DDKSNQ +GEVNQIEG EKPRI A+K                                  
Sbjct: 181 DDKSNQVEGEVNQIEGGEKPRIKALKYLSSLQKKSQERNVPTERGLLGKSQTSKAPLGEG 240

[Close]

BLAST of MELO3C035590 vs. NCBI nr
Match: KAA0057470.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK30166.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-42
Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 88  DSSSGFASLISDSDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCS 147
           D SSG       SD +S   +    + EG E P I  ++AYEF VVPF+L DAKGGK CS
Sbjct: 168 DRSSG-VKYFPKSDIRSRHCRVRTTKTEGLETPCITGLRAYEFPVVPFSLTDAKGGKCCS 227

Query: 148 VQRQINVLGHVVEFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRG 207
           +QRQINVLGHVVEFHQIE  K+KI ATCD RIPKS +ELRS PG ANSNGQF +GFL+R 
Sbjct: 228 MQRQINVLGHVVEFHQIEVGKRKIAATCDGRIPKSFVELRSCPGRANSNGQFMEGFLKR- 287

Query: 208 ASSMTKLLEEEDIQWGGNLECQSTFDGPK 237
           ASS+T+LL+EE+IQWGGNL+ Q+ FDG K
Sbjct: 288 ASSLTELLKEENIQWGGNLKHQAAFDGRK 314

[Close]

BLAST of MELO3C035590 vs. NCBI nr
Match: TYK18540.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-41
Identity = 87/137 (63.50%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           +D +    +    ++EG E   +  ++AYEFLVVPF+L DAKGGK C V RQINVLG+VV
Sbjct: 171 ADMQPRYCRIRATKVEGLETTYVTGLRAYEFLVVPFSLIDAKGGKCCFVPRQINVLGYVV 230

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIE   +KITATCD RIPKSV ELR   GL NSNGQF +GFL+R  SS+T+LL+EED
Sbjct: 231 EFHQIEVEMRKITATCDRRIPKSVTELRLCLGLVNSNGQFVEGFLKRRTSSLTELLKEED 290

Query: 220 IQWGGNLECQSTFDGPK 237
           IQWGGNLECQ+ FDG K
Sbjct: 291 IQWGGNLECQAAFDGLK 307

[Close]

BLAST of MELO3C035590 vs. NCBI nr
Match: KAA0058247.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-39
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           SD +S   +    + +G     +  ++AYEF V PF+L DAKGGK+CS+QRQINVLG+VV
Sbjct: 106 SDIRSRYCRVRATKGKGLGTTYVTKLRAYEFPVAPFSLTDAKGGKFCSLQRQINVLGYVV 165

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIE  K+KI  TCDERI K VIELR    LANSN QFT+GFLQRG SS+T+LL+EED
Sbjct: 166 EFHQIEVEKRKIAVTCDERILKLVIELRPCLELANSNEQFTNGFLQRGISSLTELLKEED 225

Query: 220 IQWGGNLECQSTFDGPK 237
           IQWGGNLECQ+ F+G K
Sbjct: 226 IQWGGNLECQAIFNGLK 242

[Close]

BLAST of MELO3C035590 vs. ExPASy TrEMBL
Match: A0A5D3DPW5 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00060 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 105/128 (82.03%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           SD +    +    + EG +   +  ++AYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV
Sbjct: 70  SDIRPRHCRVRATKAEGLKATCVTGLRAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 129

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED
Sbjct: 130 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 189

Query: 220 IQWGGNLE 228
           IQWGGNLE
Sbjct: 190 IQWGGNLE 197

[Close]

BLAST of MELO3C035590 vs. ExPASy TrEMBL
Match: A0A5D3CIQ1 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00150 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 163/537 (30.35%), Postives = 181/537 (33.71%), Query Frame = 0


Query: 25  MLYLAEVPDSICFLESRLKEIAEKTDTIDAIASRVKGLPIQELLARVDTLEGNIGRIVNY 84
           MLYLA+VPDS+ FLESR +EIAEKTDTID +ASRV+GLPIQELLARVDTLEGNIGR VNY
Sbjct: 1   MLYLAKVPDSVRFLESRFEEIAEKTDTIDTVASRVEGLPIQELLARVDTLEGNIGRTVNY 60

Query: 85  EYRDSSSGF--------------------------------------------------- 144
           EY DSSSGF                                                   
Sbjct: 61  EYGDSSSGFVAHMEEHTEPHNASNANQAPAGGAILVSIVEIPEPKPFCAARDAKGLKPWA 120

Query: 145 ----------------------ASLISD-------------------------------S 204
                                 ++LISD                               S
Sbjct: 121 KTKLYEQKVQDLTSAYAATERLSNLISDSQDVRRHQSSSPQRNRNSRSSSSKAVGGDKHS 180

Query: 205 DDKSNQAKGEVNQIEGCEKPRIGAIK---------------------------------- 237
           DDKSNQ +GEVNQIEG EKPRI A+K                                  
Sbjct: 181 DDKSNQVEGEVNQIEGGEKPRIKALKYLSSLQKKSQERNVPTERGLLGKSQTSKAPLGEG 240

[Close]

BLAST of MELO3C035590 vs. ExPASy TrEMBL
Match: A0A5A7UQU1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001540 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 95/149 (63.76%), Postives = 112/149 (75.17%), Query Frame = 0


Query: 88  DSSSGFASLISDSDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCS 147
           D SSG       SD +S   +    + EG E P I  ++AYEF VVPF+L DAKGGK CS
Sbjct: 168 DRSSG-VKYFPKSDIRSRHCRVRTTKTEGLETPCITGLRAYEFPVVPFSLTDAKGGKCCS 227

Query: 148 VQRQINVLGHVVEFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRG 207
           +QRQINVLGHVVEFHQIE  K+KI ATCD RIPKS +ELRS PG ANSNGQF +GFL+R 
Sbjct: 228 MQRQINVLGHVVEFHQIEVGKRKIAATCDGRIPKSFVELRSCPGRANSNGQFMEGFLKR- 287

Query: 208 ASSMTKLLEEEDIQWGGNLECQSTFDGPK 237
           ASS+T+LL+EE+IQWGGNL+ Q+ FDG K
Sbjct: 288 ASSLTELLKEENIQWGGNLKHQAAFDGRK 314

[Close]

BLAST of MELO3C035590 vs. ExPASy TrEMBL
Match: A0A5D3D4U2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00400 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 87/137 (63.50%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           +D +    +    ++EG E   +  ++AYEFLVVPF+L DAKGGK C V RQINVLG+VV
Sbjct: 171 ADMQPRYCRIRATKVEGLETTYVTGLRAYEFLVVPFSLIDAKGGKCCFVPRQINVLGYVV 230

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIE   +KITATCD RIPKSV ELR   GL NSNGQF +GFL+R  SS+T+LL+EED
Sbjct: 231 EFHQIEVEMRKITATCDRRIPKSVTELRLCLGLVNSNGQFVEGFLKRRTSSLTELLKEED 290

Query: 220 IQWGGNLECQSTFDGPK 237
           IQWGGNLECQ+ FDG K
Sbjct: 291 IQWGGNLECQAAFDGLK 307

[Close]

BLAST of MELO3C035590 vs. ExPASy TrEMBL
Match: A0A5A7UU30 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005720 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 9.1e-40
Identity = 86/137 (62.77%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 100 SDDKSNQAKGEVNQIEGCEKPRIGAIKAYEFLVVPFNLADAKGGKYCSVQRQINVLGHVV 159
           SD +S   +    + +G     +  ++AYEF V PF+L DAKGGK+CS+QRQINVLG+VV
Sbjct: 106 SDIRSRYCRVRATKGKGLGTTYVTKLRAYEFPVAPFSLTDAKGGKFCSLQRQINVLGYVV 165

Query: 160 EFHQIEGRKKKITATCDERIPKSVIELRSYPGLANSNGQFTDGFLQRGASSMTKLLEEED 219
           EFHQIE  K+KI  TCDERI K VIELR    LANSN QFT+GFLQRG SS+T+LL+EED
Sbjct: 166 EFHQIEVEKRKIAVTCDERILKLVIELRPCLELANSNEQFTNGFLQRGISSLTELLKEED 225

Query: 220 IQWGGNLECQSTFDGPK 237
           IQWGGNLECQ+ F+G K
Sbjct: 226 IQWGGNLECQAIFNGLK 242

The following BLAST results are available for this feature:

BLAST of MELO3C035590 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035436.1	2.5e-52	82.03	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK25716.1 ...	[more]
TYK11803.1	1.1e-42	30.35	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0057470.1	2.4e-42	63.76	reverse transcriptase [Cucumis melo var. makuwa] >TYK30166.1 reverse transcripta...	[more]
TYK18540.1	2.6e-41	63.50	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0058247.1	1.9e-39	62.77	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPW5	1.2e-52	82.03	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CIQ1	5.1e-43	30.35	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UQU1	1.1e-42	63.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21...	[more]
A0A5D3D4U2	1.3e-41	63.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UU30	9.1e-40	62.77	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]

BLAST of MELO3C035590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 127..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035590.1	MELO3C035590.1	mRNA