MELO3C035570 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035570
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 10282467 .. 10282932 (-)
RNA-Seq Expression	MELO3C035570
Synteny	MELO3C035570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGGTGCGTTACTAATCATTTGAACAATTACTGTAGTATATTTAAAAAAAAAGGACTAACAATTTATTATTGCACTTGTACAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATGTTTGAAAAAGATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACTGA

mRNA sequence

ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATGTTTGAAAAAGATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACTGA

Coding sequence (CDS)

ATGATGACCTTCAAGATCCTAGGTTCTAACGTCCATGCTTCAACGATCGATAGCCGAATAAAATTGTTGAAGAGAATGTTCCATGCACTTACGGAGATGCGTGGCCCAACTTGCAGTGGTTTTGGGTGGAATGATGAACAAAAATACATTGTCGCAGAGAAAGAAGTCTTCGACGATTTGGTCAAGAGTCATCCGGCAGCCAAAGGCCTCCTTAATAAGTCGTTTCTCCACTATGACGAACTGTCGTACATGTTTGAAAAAGATCGTGCGACGGCAGGCCGGTCGAGACTTTTGCGGATGTTAGGTCAAACAATCCTATTGGGTATGAGGCATTTACCGCTGATGCTGTGTCGAATATGGACTTCCAGCCAATGTACAGTCACT

Protein sequence

MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMRHLPLMLCRIWTSSQCTVT

Homology

[Close]

BLAST of MELO3C035570 vs. NCBI nr
Match: TYK20320.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 7.5e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 8   GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 67
           GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA
Sbjct: 178 GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 237

Query: 68  KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMR 111
           KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLG R
Sbjct: 238 KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGTR 280

[Close]

BLAST of MELO3C035570 vs. NCBI nr
Match: KAA0040938.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 7.5e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 8   GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 67
           GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA
Sbjct: 133 GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 192

Query: 68  KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMR 111
           KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLG R
Sbjct: 193 KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGTR 235

[Close]

BLAST of MELO3C035570 vs. NCBI nr
Match: TYK18628.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 8.6e-47
Identity = 100/125 (80.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSNVHASTIDSRIKLLKRMFHA+  MRGPTCSGFGWNDEQK IVAEKEV D+ 
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIVGMRGPTCSGFGWNDEQKCIVAEKEVLDNW 110

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMRHLPLMLCRIW 120
           VKSH AAKGLLNKSF HYDELSY+F KDRAT GR R+L+ LGQTILLG  HL L L RI 
Sbjct: 111 VKSHTAAKGLLNKSFSHYDELSYVFGKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRIR 170

Query: 121 TSSQC 126
           TSS C
Sbjct: 171 TSSLC 175

[Close]

BLAST of MELO3C035570 vs. NCBI nr
Match: TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 84/107 (78.50%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MMTFKI GSNVH STIDSRIKLLKRMFHA+ EMRGPTCSGFGWNDEQK IV EKEVFDD 
Sbjct: 51  MMTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW 110

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILL 108
           VKSHP AKGLLNKSF HYDELSYMF KDRA  GR +    +G   L+
Sbjct: 111 VKSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLV 157

[Close]

BLAST of MELO3C035570 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 2.3e-39
Identity = 81/102 (79.41%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLG 103
           VKSHP AKGLLNKSF+HYDELSY+F KDRAT GR+     +G
Sbjct: 107 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIG 148

[Close]

BLAST of MELO3C035570 vs. ExPASy TrEMBL
Match: A0A5D3DA20 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00510 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.6e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 8   GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 67
           GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA
Sbjct: 178 GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 237

Query: 68  KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMR 111
           KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLG R
Sbjct: 238 KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGTR 280

[Close]

BLAST of MELO3C035570 vs. ExPASy TrEMBL
Match: A0A5A7TDA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G001320 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.6e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 8   GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 67
           GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA
Sbjct: 133 GSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAA 192

Query: 68  KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMR 111
           KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLG R
Sbjct: 193 KGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGTR 235

[Close]

BLAST of MELO3C035570 vs. ExPASy TrEMBL
Match: A0A5D3D513 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001660 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 100/125 (80.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSNVHASTIDSRIKLLKRMFHA+  MRGPTCSGFGWNDEQK IVAEKEV D+ 
Sbjct: 51  MMAFKIPGSNVHASTIDSRIKLLKRMFHAIVGMRGPTCSGFGWNDEQKCIVAEKEVLDNW 110

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILLGMRHLPLMLCRIW 120
           VKSH AAKGLLNKSF HYDELSY+F KDRAT GR R+L+ LGQTILLG  HL L L RI 
Sbjct: 111 VKSHTAAKGLLNKSFSHYDELSYVFGKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRIR 170

Query: 121 TSSQC 126
           TSS C
Sbjct: 171 TSSLC 175

[Close]

BLAST of MELO3C035570 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.4e-40
Identity = 84/107 (78.50%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MMTFKI GSNVH STIDSRIKLLKRMFHA+ EMRGPTCSGFGWNDEQK IV EKEVFDD 
Sbjct: 51  MMTFKIQGSNVHVSTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVVEKEVFDDW 110

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLGQTILL 108
           VKSHP AKGLLNKSF HYDELSYMF KDRA  GR +    +G   L+
Sbjct: 111 VKSHPTAKGLLNKSFPHYDELSYMFGKDRAMGGRPKSFTDVGSNDLV 157

[Close]

BLAST of MELO3C035570 vs. ExPASy TrEMBL
Match: A0A1S3CTN6 (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 81/102 (79.41%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MMTFKILGSNVHASTIDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDL 60
           MM FKI GSN+HASTIDSRIKL+KRMFHAL EMRGP CSGFGWNDE+K IVAEKEVFDD 
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 106

Query: 61  VKSHPAAKGLLNKSFLHYDELSYMFEKDRATAGRSRLLRMLG 103
           VKSHP AKGLLNKSF+HYDELSY+F KDRAT GR+     +G
Sbjct: 107 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIG 148

[Close]

BLAST of MELO3C035570 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 19/70 (27.14%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 16  IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D+ +K HP ++    KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYMF 86
             Y +L  ++
Sbjct: 126 PCYKDLCLVY 133

[Close]

BLAST of MELO3C035570 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 19/70 (27.14%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 16  IDSRIKLLKRMFHALTEMRGPTCSGFGWNDEQKYIVAEKEVFDDLVKSHPAAKGLLNKSF 75
           + +R K L+ +F ++  +      GF W+D ++ +VA+  V+D+ +K HP ++    KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 76  LHYDELSYMF 86
             Y +L  ++
Sbjct: 126 PCYKDLCLVY 133

The following BLAST results are available for this feature:

BLAST of MELO3C035570 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035570 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20320.1	7.5e-51	99.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040938.1	7.5e-51	99.03	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK18628.1	8.6e-47	80.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05687.1	1.3e-39	78.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008466949.1	2.3e-39	79.41	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]

BLAST of MELO3C035570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DA20	3.6e-51	99.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TDA2	3.6e-51	99.03	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D513	4.2e-47	80.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1J4	6.4e-40	78.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CTN6	1.1e-39	79.41	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]

BLAST of MELO3C035570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	7.3e-04	27.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	7.3e-04	27.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..91
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035570.1	MELO3C035570.1	mRNA