MELO3C035564 (gene) Melon (DHL92) v4

Overview
NameMELO3C035564
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr08: 31908664 .. 31909447 (+)
RNA-Seq ExpressionMELO3C035564
SyntenyMELO3C035564
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCCTTTTGTTTGTGACTGTTAAATGTGAAATTATGAAATTACTAACGTACTCCATGTATTTCTTGTAATTTGTCATTCTTAGTATGTCAATCTCAAACCGTGCCCCGAGACATGTCTGGACGGAGGAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTTGGCTAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGACGTCAGGTCTGCGCAACGACTGTAATTAACTGTAGAACAAAGACACTGAAGCAGACATTCCAGGCCATCACCGAAATGTAAGGGCCAACGTGCAGTGACTTTGAGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCGCAATGTATATTTACTTAACAATTTTTCTATCAGTACTCATAAGTGATCTTTTTTTTCCTCGCAGTCGCATCTTGCAGTGAAGGAACTCCAGAACAAATCGTTTCCATATTACGACGAACTTACATATGTGTTCAGTCGCGATAGGACGACAGATCGGTTCGCTGAGACATTCACCGACGTGGGGTCTAACGAGCCTGGGTGGTATGATGGATTTGATATGAGGGATGGAAACGAGGAGTTCCCGCCCGTGTATAGCCAAGGGATTGACCTGTCGCAGAACAATGTACGCGCGTCACAACCTTCTCGCGCTTCAAAGGGTAGGATC

mRNA sequence

GTGCCTTTTGTTTGTGACTGTTAAATGTGAAATTATGAAATTACTAACGTACTCCATGTATTTCTTGTAATTTGTCATTCTTAGTATGTCAATCTCAAACCGTGCCCCGAGACATGTCTGGACGGAGGAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTTGGCTAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGACGTCAGGTCTGCGCAACGACTGTAATTAACTGTAGAACAAAGACACTGAAGCAGACATTCCAGGCCATCACCGAAATGTAAGGGCCAACGTGCAGTGACTTTGAGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCTTGCAGTGAAGGAACTCCAGAACAAATCGTTTCCATATTACGACGAACTTACATATGTGTTCAGTCGCGATAGGACGACAGATCGGTTCGCTGAGACATTCACCGACGTGGGGTCTAACGAGCCTGGGTGGTATGATGGATTTGATATGAGGGATGGAAACGAGGAGTTCCCGCCCGTGTATAGCCAAGGGATTGACCTGTCGCAGAACAATGTACGCGCGTCACAACCTTCTCGCGCTTCAAAGGGTAGGATC

Coding sequence (CDS)

ATGTCAATCTCAAACCGTGCCCCGAGACATGTCTGGACGGAGGAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTTGGCTAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGACGTCAGGTCTGCGCAACGACTGTAATTAACTGTAGAACAAAGACACTGAAGCAGACATTCCAGGCCATCACCGAAATGTAA

Protein sequence

MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQVCATTVINCRTKTLKQTFQAITEM
Homology
[Close]
BLAST of MELO3C035564 vs. NCBI nr
Match: KAA0053511.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT EEEGTL+ECLMELVSMGGWKSDNGTF LGYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIVEM 84

[Close]
BLAST of MELO3C035564 vs. NCBI nr
Match: KAA0052259.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-32
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYLTQLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLPGYQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI E+
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEI 84

[Close]
BLAST of MELO3C035564 vs. NCBI nr
Match: KAA0041774.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27062.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNR+PRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRSPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLKQTFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKQTFQAIVEM 84

[Close]
BLAST of MELO3C035564 vs. NCBI nr
Match: KAA0068155.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLP  Q
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPRCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLKQTFQAITEM
Sbjct: 61 VRATTVIDCRIKTLKQTFQAITEM 84

[Close]
BLAST of MELO3C035564 vs. NCBI nr
Match: KAA0065929.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.0e-32
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEM 84

[Close]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match: A0A5A7UIZ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00680 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-33
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT EEEGTL+ECLMELVSMGGWKSDNGTF LGYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTREEEGTLMECLMELVSMGGWKSDNGTFRLGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIVEM 84

[Close]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match: A0A5A7UFK7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00820 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.5e-33
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYLTQLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLTQLVRMMAEKLPGYQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI E+
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEI 84

[Close]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match: A0A5A7TEB4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00560 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNR+PRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRSPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLKQTFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKQTFQAIVEM 84

[Close]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match: A0A5A7VR00 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001230 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLP  Q
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPRCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLKQTFQAITEM
Sbjct: 61 VRATTVIDCRIKTLKQTFQAITEM 84

[Close]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MSISNRAPRHVWTEEEEGTLVECLMELVSMGGWKSDNGTFWLGYLTQLVRMMAEKLPGRQ 60
          MS SNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTF  GYL QLVRMMAEKLPG Q
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VCATTVINCRTKTLKQTFQAITEM 85
          V ATTVI+CR KTLK+TFQAI EM
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEM 84

The following BLAST results are available for this feature:
BLAST of MELO3C035564 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053511.11.3e-3286.90retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052259.11.8e-3286.90retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041774.12.3e-3286.90retrotransposon protein [Cucumis melo var. makuwa] >TYK27062.1 retrotransposon p... [more]
KAA0068155.12.3e-3288.10retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065929.13.0e-3286.90retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C035564 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UIZ26.5e-3386.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UFK78.5e-3386.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TEB41.1e-3286.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VR001.1e-3288.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VKT21.5e-3286.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C035564 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 4..84
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 4..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035564.1MELO3C035564.1mRNA