MELO3C035546 (gene) Melon (DHL92) v4

Overview
NameMELO3C035546
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionpheophorbide a oxygenase, chloroplastic
Locationchr12: 8323506 .. 8325502 (+)
RNA-Seq ExpressionMELO3C035546
SyntenyMELO3C035546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGTAAGCAGTCCGTGTTAATTAAATCTCTTTCTCATTTTTATGATATATTATAGTCTCTACAGTTATTGAGCATTCAATATGCAGTAATATGTTCCGATATTACAGTGTTTGACTTCCTAAGTTTGCTTTCTCTATTTGGTGGTTCCTTGATGGCACGAGCATTGGACTTCAAATAAGGTATATGATAGAGACATGATTGTTCTTCAGGGTCAGGAGAAGATAAATATCAATGGAAGGTTTGGACAGATATAAATAAAAATAAACTAAAATAACGTTTACACCAACACAAGCGGAAACTTTTGGTTGTAGCATTTTGAAATTGGCTGAGGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGTACTGAAAATTACCAGCATCTGGATTGTTTTGAAATTGACTAGAATGTCCGTGTACAATTCGTCCAATTTCTGTAACTACTATAAGTTTGGAAGTCTAATTTTAATAATCGTAAGTTTAAGGTCTTAATTTTTATTATTAAAAATAAGTGTGGTTGATGAGATTATTATCATCTCCGCTACAGATGGACAGATTTGAGCAACACACACTTAATTGTCCATCTTGTAAAGGAGCTTAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGGTTTGAACTTCAAAAAGAATTTTGTGTTCATTGACTATGTTCATGCAGAGATTGATTAGAAGATACCATTAGAGATTGAGAGAGAAATATTGTTGTTTAGAGGAGGATTTTAATCAAGTAATGTATAGTTTTACAAAGATATCGTAGTTGAACTGTGCGAAATGAAACTAGAGACGAATATGTCTTCGTTTTGTTTGGTTGTATTCTTGTTACAGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACGTTAGTTGTTGATGTAACAAAACTTTGATTTTGAGTACATGACTCCACTGATAATTCTTGAATGTATGTTTAAAACCGCATTACTTGTATTAATTGTTTGAGTCCCTAACCATAGTACTCAAAGCAGTGAAGTTATTTGAAAGCTGGCATAGTTTAACATTATTGACCAAGAAGTTTTTAATATAAATCTTTACTTTTTATTGTATTCTTAAAAAAGTAAAAAGTAATTTACCCTTTTGTTACAAAAATATATAATTTGGCTTAAACTTATAGTTGAATTTGGTTTTTATATTTTCCAAAAAGTGCTTTTGTTCTTTAATTATTTATACCTTATATTTTTTTTACTAGTTAGGTTGTTAGGTAAAGATTTTACGAATATAGCTACAGAAATTCAAGAGTGATCATTTGGTCTTAAGTGTCTTGTCAAAATATACCAATACCATAAAATTGCAGTTTTTGTACCAATGATAATATGTCAAAATGGTACCCCCTTACCAATTTTACAATATTATTGTTTGATCTTACATAATTGTTTGATTGTATTTCTAAAGTAAAACTCTTGTATTTCTAATGAAGTTTTCACGATTCTATAGTTCTTACATTTACTACACAATCGTGCAAACATATTAAAATATCATTTAATTAAGGGTGCTCGATGGTTTAGTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

mRNA sequence

ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

Coding sequence (CDS)

ATGGGTAGTATGGATTTGCTCCTTCAATGTGTTAATGGGTCCTGGAAAAACTTGTATGTAGTGCTCGAAACTTCTTCCAGTTTTCAATGCCCGGACTTGCTTGGTGGCAAGCGCCACGGAAAAGGCCAACCTGAATGGTTCAGGACTAGCAGCCAACAGCCTCTGCCATCAACAGTTCTATCTAAACGTCAGGAAACATTTCAAACAGTGCAAAGGCTCCTAATTGGGGCAACTGTAGTTTTCGCGGCCACCACAGGTATCCCTTGTGCTGTACAGATACACATATTCTTCTTGCCAGTCTTGCACTCGCAAGCGTCGGCTTGGCTTAGGCTCGCCATTAATTTTGATATTGTTCCAATTCAGTTTTATTTTAGGACTAATGACTGTAGAGTTGCACCATCATTTAGTGGAAGCTCACTGATTACAAAGACTTTATTGCCCAGCTGTGCACTTTTAGTTAGAATGTGTAGTAAAGTAAGACTCTCCGCGATTGCTCAGTGTAGGGTTGACAATGGTCATGCTTTAATATTTGTACAATTTGGTGGAGAATGA

Protein sequence

MGSMDLLLQCVNGSWKNLYVVLETSSSFQCPDLLGGKRHGKGQPEWFRTSSQQPLPSTVLSKRQETFQTVQRLLIGATVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAINFDIVPIQFYFRTNDCRVAPSFSGSSLITKTLLPSCALLVRMCSKVRLSAIAQCRVDNGHALIFVQFGGE
Homology
BLAST of MELO3C035546 vs. ExPASy Swiss-Prot
Match: Q9FYC2 (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 37  KRHGKGQPEWF-RTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIG 96
           +RHGK QPEWF  T S QPLPSTVL+KRQ                    +FQ +++ L+G
Sbjct: 425 RRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVG 484

Query: 97  ATVVFAATTGIPCAVQIHIFFLPV-LHSQASAW 109
           ATV +AAT G+P  VQI +    + L S ASA+
Sbjct: 485 ATVFWAATAGVPSDVQIRLVLAGLSLISAASAY 517

BLAST of MELO3C035546 vs. ExPASy Swiss-Prot
Match: Q0DV66 (Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PAO PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-08
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           ++ G  QP+WF   SQ+ LPSTVLSKR+                     FQT+Q++ +GA
Sbjct: 418 RKFGNSQPDWFGNPSQEVLPSTVLSKREMLDRYEQHTLKCSSCKGAYNAFQTLQKVFMGA 477

Query: 97  TVVFAATTGIPCAVQIHIFFLP---VLHSQASAWLRLAINFDIV 119
           TV F AT GIP  VQ  +       V  + A A+  L  NF  V
Sbjct: 478 TVAFCATAGIPADVQFRLLLAAAALVSAAVAYAFYTLQKNFVFV 521

BLAST of MELO3C035546 vs. NCBI nr
Match: XP_031740836.1 (pheophorbide a oxygenase, chloroplastic [Cucumis sativus] >KAE8652781.1 hypothetical protein Csa_022752 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-15
Identity = 56/96 (58.33%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVFAAT GIP A+QI I    +  + ASA L  A+
Sbjct: 494 TVVFAATAGIPSALQIRILLASL--ALASAGLAYAL 527

BLAST of MELO3C035546 vs. NCBI nr
Match: XP_008462467.1 (PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo] >KAA0032593.1 pheophorbide a oxygenase [Cucumis melo var. makuwa] >TYK20892.1 pheophorbide a oxygenase [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-15
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWFR SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFRASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVF+AT GIP ++QI +    +  + ASA L  A+
Sbjct: 494 TVVFSATAGIPSSLQIRVLLASL--ALASAGLAYAL 527

BLAST of MELO3C035546 vs. NCBI nr
Match: XP_023519435.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  S+QQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 435 RRHGKGQPEWFGASNQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 494

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVFAAT GIP A+Q+ I    +  + ASA L  A+
Sbjct: 495 TVVFAATAGIPSALQMRILLAAL--ALASAGLAYAL 528

BLAST of MELO3C035546 vs. NCBI nr
Match: KAG6583591.1 (Pheophorbide a oxygenase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 419 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 478

BLAST of MELO3C035546 vs. NCBI nr
Match: XP_022964963.1 (pheophorbide a oxygenase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 493

BLAST of MELO3C035546 vs. ExPASy TrEMBL
Match: A0A5D3DBC9 (Pheophorbide a oxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00270 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWFR SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFRASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVF+AT GIP ++QI +    +  + ASA L  A+
Sbjct: 494 TVVFSATAGIPSSLQIRVLLASL--ALASAGLAYAL 527

BLAST of MELO3C035546 vs. ExPASy TrEMBL
Match: A0A1S3CII7 (pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWFR SSQQPLPSTVLSKRQ                   +TFQTVQRLLIGA
Sbjct: 434 RRHGKGQPEWFRASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCKGAYKTFQTVQRLLIGA 493

Query: 97  TVVFAATTGIPCAVQIHIFFLPVLHSQASAWLRLAI 114
           TVVF+AT GIP ++QI +    +  + ASA L  A+
Sbjct: 494 TVVFSATAGIPSSLQIRVLLASL--ALASAGLAYAL 527

BLAST of MELO3C035546 vs. ExPASy TrEMBL
Match: A0A6J1HYR3 (pheophorbide a oxygenase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469310 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.7e-14
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 493

BLAST of MELO3C035546 vs. ExPASy TrEMBL
Match: A0A6J1HMG2 (pheophorbide a oxygenase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464914 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.7e-14
Identity = 48/78 (61.54%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   +TFQT+Q+LLIGA
Sbjct: 434 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKTFQTLQKLLIGA 493

BLAST of MELO3C035546 vs. ExPASy TrEMBL
Match: A0A6J1DFC6 (pheophorbide a oxygenase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020548 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-13
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 37  KRHGKGQPEWFRTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIGA 96
           +RHGKGQPEWF  SSQQPLPSTVLSKRQ                   ++FQT+Q+LLIGA
Sbjct: 436 RRHGKGQPEWFGASSQQPLPSTVLSKRQMLDRFEQHTLHCSSCRGAYKSFQTLQKLLIGA 495

BLAST of MELO3C035546 vs. TAIR 10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain )

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-11
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 37  KRHGKGQPEWF-RTSSQQPLPSTVLSKRQ-------------------ETFQTVQRLLIG 96
           +RHGK QPEWF  T S QPLPSTVL+KRQ                    +FQ +++ L+G
Sbjct: 425 RRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVG 484

Query: 97  ATVVFAATTGIPCAVQIHIFFLPV-LHSQASAW 109
           ATV +AAT G+P  VQI +    + L S ASA+
Sbjct: 485 ATVFWAATAGVPSDVQIRLVLAGLSLISAASAY 517

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FYC24.3e-1045.16Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P... [more]
Q0DV668.9e-0837.50Pheophorbide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947... [more]
Match NameE-valueIdentityDescription
XP_031740836.17.3e-1558.33pheophorbide a oxygenase, chloroplastic [Cucumis sativus] >KAE8652781.1 hypothet... [more]
XP_008462467.17.3e-1556.25PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo] >KAA0032593.1 ... [more]
XP_023519435.11.8e-1354.17pheophorbide a oxygenase, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG6583591.11.8e-1361.54Pheophorbide a oxygenase, chloroplastic, partial [Cucurbita argyrosperma subsp. ... [more]
XP_022964963.11.8e-1361.54pheophorbide a oxygenase, chloroplastic [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A5D3DBC93.5e-1556.25Pheophorbide a oxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CII73.5e-1556.25pheophorbide a oxygenase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500813 ... [more]
A0A6J1HYR38.7e-1461.54pheophorbide a oxygenase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469... [more]
A0A6J1HMG28.7e-1461.54pheophorbide a oxygenase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1DFC64.3e-1358.97pheophorbide a oxygenase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
Match NameE-valueIdentityDescription
AT3G44880.13.0e-1145.16Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21266:SF24PHEOPHORBIDE A OXYGENASE, CHLOROPLASTICcoord: 37..99
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 37..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035546.1MELO3C035546.1mRNA