MELO3C035505 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035505
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
Location	chr12: 19118222 .. 19118413 (-)
RNA-Seq Expression	MELO3C035505
Synteny	MELO3C035505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCGCTGTAGATGCTGCAGGAGATCCTATTCCTACATCGGCGGTGCTAATGTCCTCCTCAAAGCACATCGCGATTAAGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAACAGAAGGATCCCAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAA

mRNA sequence

ATGGCGAGCGCTGTAGATGCTGCAGGAGATCCTATTCCTACATCGGCGGTGCTAATGTCCTCCTCAAAGCACATCGCGATTAAGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAACAGAAGGATCCCAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAA

Coding sequence (CDS)

ATGGCGAGCGCTGTAGATGCTGCAGGAGATCCTATTCCTACATCGGCGGTGCTAATGTCCTCCTCAAAGCACATCGCGATTAAGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAACAGAAGGATCCCAACCCGGAGAAATGCCTGGACAAAGGCCATCAAGTCACTCGATGCGTCCTCTCCCTGTAA

Protein sequence

MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCVLSL

Homology

[Close]

BLAST of MELO3C035505 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI ++C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy Swiss-Prot
Match: Q9SQT4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-18
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI I+C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C035505 vs. NCBI nr
Match: XP_004135555.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus] >XP_008445083.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis melo] >KGN65934.1 hypothetical protein Csa_023175 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. NCBI nr
Match: KAA0054071.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis melo var. makuwa] >TYJ96852.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. NCBI nr
Match: XP_038906805.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 7.7e-25
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA +CR ENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANRCRLENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. NCBI nr
Match: XP_038893587.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 7.7e-25
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAV+AAGDPIPTSAVLMSSSKHIA KCRSENVAYLQCKQKDPNPEKCL+KGHQVTRCV
Sbjct: 1  MASAVNAAGDPIPTSAVLMSSSKHIANKCRSENVAYLQCKQKDPNPEKCLEKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy TrEMBL
Match: A0A5A7UKJ4 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00070 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy TrEMBL
Match: A0A0A0LY30 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy TrEMBL
Match: A0A1S3BBD5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo OX=3656 GN=LOC103488226 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy TrEMBL
Match: A0A6J1KXR2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita maxima OX=3661 GN=LOC111499155 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. ExPASy TrEMBL
Match: A0A6J1H2X4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita moschata OX=3662 GN=LOC111459990 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          MASAVDAAGDPIPTSAVLMSSSKHIA  CRSENVAYLQCK+KDPNPEKCLDKG QVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of MELO3C035505 vs. TAIR 10
Match: AT5G18800.1 (Cox19-like CHCH family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-21
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI ++C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C035505 vs. TAIR 10
Match: AT5G18800.2 (Cox19-like CHCH family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-21
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCV 60
          M+SAVDA G+PIPTSAVL +S+KHI ++C  ENVA+L+CK+ DPNPEKCLDKG  VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of MELO3C035505 vs. TAIR 10
Match: AT3G06310.1 (Cox19-like CHCH family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI I+C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C035505 vs. TAIR 10
Match: AT3G06310.2 (Cox19-like CHCH family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI I+C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

[Close]

BLAST of MELO3C035505 vs. TAIR 10
Match: AT3G06310.3 (Cox19-like CHCH family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 3  SAVDAAGDPIPTSAVLMSSSKHIAIKCRSENVAYLQCKQKDPNPEKCLDKGHQVTRCVLS 62
          +AVD  G+PIPTSAVL +S+KHI I+C  EN+A+L+CK+ DPNPEKCL+KG  VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

The following BLAST results are available for this feature:

BLAST of MELO3C035505 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE7	2.1e-20	71.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
Q9SQT4	1.5e-18	67.21	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

BLAST of MELO3C035505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135555.1	1.1e-26	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucumis sativus]...	[more]
KAA0054071.1	1.1e-26	100.00	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8-B-like [Cucumis mel...	[more]
XP_038906805.1	7.7e-25	95.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Benincasa hispid...	[more]
XP_038893587.1	7.7e-25	95.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Benincasa h...	[more]
XP_022958837.1	8.6e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]

BLAST of MELO3C035505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKJ4	5.2e-27	100.00	NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 8-B-like OS=Cucumis m...	[more]
A0A0A0LY30	5.2e-27	100.00	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G538810 PE=3 S...	[more]
A0A1S3BBD5	5.2e-27	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Cucumis melo O...	[more]
A0A6J1KXR2	4.1e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]
A0A6J1H2X4	4.1e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like OS=Cucurbita...	[more]

BLAST of MELO3C035505 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18800.1	1.5e-21	71.43	Cox19-like CHCH family protein	[more]
AT5G18800.2	1.5e-21	71.43	Cox19-like CHCH family protein	[more]
AT3G06310.1	1.0e-19	67.21	Cox19-like CHCH family protein	[more]
AT3G06310.2	1.0e-19	67.21	Cox19-like CHCH family protein	[more]
AT3G06310.3	1.0e-19	67.21	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016680	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..63
None	No IPR available	PANTHER	PTHR13344:SF2	CHCH-RELATED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035505.1	MELO3C035505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone