MELO3C035500 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035500
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr10: 9841911 .. 9842611 (+)
RNA-Seq Expression	MELO3C035500
Synteny	MELO3C035500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTGCGATCACACTGGATAATATATTGTATCACTAGAGAATATGTTCGAGGCGTAACACTTTATCTGAGTTATACTGACCCGCTCGTTCGTAGCCTTGCAAAATGATGTCTAAGTTATACTTACTCACCAAATGATGTCTGTTAGAGCTTTGCAAGCATGTGACACAGTGATTTACAGACTGGTGGGCCACGAGGCACATGGCCTATTTTGAGAATAACAGACATCATTTAGTGAGTAGTGTCATTCCTCCCCCTTCACAGTCCAAACTACCCAAGAACCGAGGGAGCAATCTGGGTGGTAAAGAAATTCGCTTGGTTGAGGCGGTGGCTGCTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATAAGAGTGATAGAAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAACGAAGGTATCAGATGATGATCTCGATGGAAAGGGTTCAAGTGCTTTGGGAGTCCCTGATGTTTCACCACTGGTTTGCACATTTTCTTAAAAAAAATTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTTCAGTCACCTTTGAACGCTCATTTTAAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGATGGGACCTTATGCAGTTGATTCGACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAGTCAAACAG

mRNA sequence

ATGCCACCTGCGATCACACTGGATAATATATTGTATCACTAGAGAATATGTTCGAGGCGTAACACTTTATCTGAGTTATACTGACCCGCTCGTTCGTAGAGCTTTGCAAGCATGTGACACAGTGATTTACAGACTGGTGGGCCACGAGGCACATGGCCTATTTTGAGAATAACAGACATCATTTAGTGAGTAGTGTCATTCCTCCCCCTTCACAGTCCAAACTACCCAAGAACCGAGGGAGCAATCTGGGTGGTAAAGAAATTCGCTTGGTTGAGGCGGTGGCTGCTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATAAGAGTGATAGAAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAACGAAGGTATCAGATGATGATCTCGATGGAAAGGGTTCAAGTGCTTTGGGAGTCCCTGATGTTTCACCACTGTCACCTTTGAACGCTCATTTTAAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGATGGGACCTTATGCAGTTGATTCGACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAGTCAAACAG

Coding sequence (CDS)

ATGGCCTATTTTGAGAATAACAGACATCATTTAGTGAGTAGTGTCATTCCTCCCCCTTCACAGTCCAAACTACCCAAGAACCGAGGGAGCAATCTGGGTGGTAAAGAAATTCGCTTGGTTGAGGCGGTGGCTGCTACTCTCGAGGAGGAGATAAAGGAGCATAAAGATAAGAGTGATAGAAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAACGAAGGTATCAGATGATGATCTCGATGGAAAGGGTTCAAGTGCTTTGGGAGTCCCTGATGTTTCACCACTGTCACCTTTGAACGCTCATTTTAAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGATGGGACCTTATGCAGTTGATTCGACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAGTCAAACAG

Protein sequence

MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAVDSTIEEVGTSKTPASKPVKQ

Homology

[Close]

BLAST of MELO3C035500 vs. NCBI nr
Match: KAA0052877.1 (hypothetical protein E6C27_scaffold1184G00090 [Cucumis melo var. makuwa] >TYK14483.1 hypothetical protein E5676_scaffold186G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR
Sbjct: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY
Sbjct: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDSTIEEVGTSKTPASKPVKQ
Sbjct: 121 AVDSTIEEVGTSKTPASKPVKQ 142

[Close]

BLAST of MELO3C035500 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 111/140 (79.29%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 3   YFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSK 62
           YFE+N HHLVSS IPPPSQ KL KNRGSNLGGKEIRLVE +AATL+EEIKEHKD+SD SK
Sbjct: 6   YFEDNIHHLVSSTIPPPSQPKLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDESDSSK 65

Query: 63  SDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAV 122
           SDRHWKRPLKK KVS DD DG+GSSA GVP+V PLSPLNAH +GL+EL SD+SL GPYAV
Sbjct: 66  SDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLTGPYAV 125

Query: 123 DSTIEEVGTSKTPASKPVKQ 143
           DSTIE VGT KT  SKP++Q
Sbjct: 126 DSTIEGVGTLKTTVSKPIEQ 145

[Close]

BLAST of MELO3C035500 vs. NCBI nr
Match: KAA0057699.1 (hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK27485.1 hypothetical protein E5676_scaffold970G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           M YFE NRHHLVSS IPPPSQ +LPKNRGSNLGGKEIRLVEA+A  LEEE+ EHKD+SD 
Sbjct: 222 MTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDESDS 281

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKK KVS D+ DG+G SAL VPDV PLSPLN H +GLI L SDESLMGP+
Sbjct: 282 SKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLNDHLEGLIALDSDESLMGPH 341

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDS  EEVGTSKTP +KP +Q
Sbjct: 342 AVDSAFEEVGTSKTPVNKPTEQ 363

[Close]

BLAST of MELO3C035500 vs. NCBI nr
Match: KAA0055892.1 (hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-53
Identity = 109/142 (76.76%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           + YFE+NRHHLVSSVIPPPSQ +LPKNRGSNLGGKEIRLVEA+A  LEEE+K+HKD+SD 
Sbjct: 360 VTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDS 419

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKK KVS D  DG+G SAL VPDV PLSPLN H +GLIE  +DESLMGP+
Sbjct: 420 SKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDNDESLMGPH 479

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDS  EEVGTSKTP +KP +Q
Sbjct: 480 AVDSAFEEVGTSKTPVNKPTEQ 501

[Close]

BLAST of MELO3C035500 vs. NCBI nr
Match: KAA0062878.1 (hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 8.9e-53
Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 3   YFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSK 62
           YFE+N HHLVSS+IPPPSQ KLPKN+GSNL GKEI LVEA+A TLE+E+KEHKD+SD SK
Sbjct: 38  YFEDNIHHLVSSIIPPPSQPKLPKNQGSNLSGKEICLVEAMAPTLEKEVKEHKDESDSSK 97

Query: 63  SDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAV 122
           SDRHWKRPLKK KVS DD DG GSSALGVPDV PLSPLN H +GLIEL SDE L GP+AV
Sbjct: 98  SDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLNDHLEGLIELDSDECLTGPHAV 157

Query: 123 DSTIEEVGTSKTPASKPVKQ 143
           +ST EEVGTSKTP +KP +Q
Sbjct: 158 NSTFEEVGTSKTPVTKPAEQ 177

[Close]

BLAST of MELO3C035500 vs. ExPASy TrEMBL
Match: A0A5D3CRJ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001530 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.4e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR
Sbjct: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY
Sbjct: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDSTIEEVGTSKTPASKPVKQ
Sbjct: 121 AVDSTIEEVGTSKTPASKPVKQ 142

[Close]

BLAST of MELO3C035500 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.1e-54
Identity = 111/140 (79.29%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 3   YFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSK 62
           YFE+N HHLVSS IPPPSQ KL KNRGSNLGGKEIRLVE +AATL+EEIKEHKD+SD SK
Sbjct: 6   YFEDNIHHLVSSTIPPPSQPKLTKNRGSNLGGKEIRLVEVMAATLKEEIKEHKDESDSSK 65

Query: 63  SDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAV 122
           SDRHWKRPLKK KVS DD DG+GSSA GVP+V PLSPLNAH +GL+EL SD+SL GPYAV
Sbjct: 66  SDRHWKRPLKKAKVSGDDPDGRGSSAFGVPNVPPLSPLNAHLEGLVELDSDKSLTGPYAV 125

Query: 123 DSTIEEVGTSKTPASKPVKQ 143
           DSTIE VGT KT  SKP++Q
Sbjct: 126 DSTIEGVGTLKTTVSKPIEQ 145

[Close]

BLAST of MELO3C035500 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.7e-54
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           M YFE NRHHLVSS IPPPSQ +LPKNRGSNLGGKEIRLVEA+A  LEEE+ EHKD+SD 
Sbjct: 222 MTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDESDS 281

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKK KVS D+ DG+G SAL VPDV PLSPLN H +GLI L SDESLMGP+
Sbjct: 282 SKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPDVPPLSPLNDHLEGLIALDSDESLMGPH 341

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDS  EEVGTSKTP +KP +Q
Sbjct: 342 AVDSAFEEVGTSKTPVNKPTEQ 363

[Close]

BLAST of MELO3C035500 vs. ExPASy TrEMBL
Match: A0A5A7UJ48 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00100 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 109/142 (76.76%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MAYFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDR 60
           + YFE+NRHHLVSSVIPPPSQ +LPKNRGSNLGGKEIRLVEA+A  LEEE+K+HKD+SD 
Sbjct: 360 VTYFEDNRHHLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKKHKDESDS 419

Query: 61  SKSDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPY 120
           SKSDRHWKRPLKK KVS D  DG+G SAL VPDV PLSPLN H +GLIE  +DESLMGP+
Sbjct: 420 SKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPDNDESLMGPH 479

Query: 121 AVDSTIEEVGTSKTPASKPVKQ 143
           AVDS  EEVGTSKTP +KP +Q
Sbjct: 480 AVDSAFEEVGTSKTPVNKPTEQ 501

[Close]

BLAST of MELO3C035500 vs. ExPASy TrEMBL
Match: A0A5A7V5I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00080 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.3e-53
Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 3   YFENNRHHLVSSVIPPPSQSKLPKNRGSNLGGKEIRLVEAVAATLEEEIKEHKDKSDRSK 62
           YFE+N HHLVSS+IPPPSQ KLPKN+GSNL GKEI LVEA+A TLE+E+KEHKD+SD SK
Sbjct: 38  YFEDNIHHLVSSIIPPPSQPKLPKNQGSNLSGKEICLVEAMAPTLEKEVKEHKDESDSSK 97

Query: 63  SDRHWKRPLKKTKVSDDDLDGKGSSALGVPDVSPLSPLNAHFKGLIELGSDESLMGPYAV 122
           SDRHWKRPLKK KVS DD DG GSSALGVPDV PLSPLN H +GLIEL SDE L GP+AV
Sbjct: 98  SDRHWKRPLKKAKVSGDDPDGMGSSALGVPDVPPLSPLNDHLEGLIELDSDECLTGPHAV 157

Query: 123 DSTIEEVGTSKTPASKPVKQ 143
           +ST EEVGTSKTP +KP +Q
Sbjct: 158 NSTFEEVGTSKTPVTKPAEQ 177

The following BLAST results are available for this feature:

BLAST of MELO3C035500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052877.1	1.1e-71	100.00	hypothetical protein E6C27_scaffold1184G00090 [Cucumis melo var. makuwa] >TYK144...	[more]
KAA0054388.1	1.0e-53	79.29	hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681...	[more]
KAA0057699.1	1.8e-53	77.46	hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK2748...	[more]
KAA0055892.1	3.1e-53	76.76	hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa]	[more]
KAA0062878.1	8.9e-53	77.86	hypothetical protein E6C27_scaffold4427G00080 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRJ3	5.4e-72	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCT1	5.1e-54	79.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UVX0	8.7e-54	77.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7UJ48	1.5e-53	76.76	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V5I2	4.3e-53	77.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035500.1	MELO3C035500.1	mRNA