MELO3C035489.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035489.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProline-rich protein HaeIII subfamily 1-like
Locationchr12: 19355465 .. 19356091 (+)
RNA-Seq ExpressionMELO3C035489.jh1
SyntenyMELO3C035489.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCTATTAGCTCCAATGTGTTTTTTGGAGCCTGTGCTCTCATACTCCTTGGATTGCACTTTGAAACACACCAAATAGATGCAAGGAGTTACTCTATCGTCAGTGAAGACAACTATGTTGTAGAAAACCAATTGACTGACGACAGTATTGAGCACCCAGAGAGATCTCATGGCCGAAACCCAAAAGAGTACTAGACTTAGCCCCACCTTTTAACCTGGGAATACTAACTGAAGACGTGCTTAGTCCTCCGTCAGAAAATGAACTGGGGGAGAACATTGTAAACCATCCAAAAAGCCATATTTGCTTCTCTTGGATTTGGCCGAGACCCAAGAGAGTACTTGACTTAGCTCCACCTTTCAGCTTGGGAATAATGTCGAACCACTTACGAACTCTTCCTTCAGAAAATTAATTAAGGGGCAACATCACAAAGCATCCAGAACGGCATATTCGTTTCTCATGGCTGAAGCCCAAGAGAGTACCTGACTTGGCTCCACCATTTAGCTTGGGAATACTATCGAAAAATGTACGTGCTTCTTCGTCTAAGCTGAGTCAAAGAAATTTTGACAACCCATCTCCCCCATCGCACACCCTACCCATCATTTTACATAAGGAATCTACAATCA

mRNA sequence

ATGATGTCTATTAGCTCCAATGTGTTTTTTGGAGCCTGTGCTCTCATACTCCTTGGATTGCACTTTGAAACACACCAAATAGATGCAAGGAGTTACTCTATCGTCAGTGAAGACAACTATGTTGTAGAAAACCAATTGACTGACGACAGTATTGAGCACCCAGAGAGATCTCATGGCCGAAACCCAAAAGAGTACTAGACTTAGCCCCACCTTTTAACCTGGGAATACTAACTGAAGACGTGCTTAGTCCTCCGTCAGAAAATGAACTGGGGGAGAACATTGTAAACCATCCAAAAAGCCATATTTGCTTCTCTTGGATTTGGCCGAGACCCAAGAGAGTACTTGACTTAGCTCCACCTTTCAGCTTGGGAATAATGTCGAACCACTTACGAACTCTTCCTTCAGAAAATTAATTAAGGGGCAACATCACAAAGCATCCAGAACGGCATATTCGTTTCTCATGGCTGAAGCCCAAGAGAGTACCTGACTTGGCTCCACCATTTAGCTTGGGAATACTATCGAAAAATGTACGTGCTTCTTCGTCTAAGCTGAGTCAAAGAAATTTTGACAACCCATCTCCCCCATCGCACACCCTACCCATCATTTTACATAAGGAATCTACAATCA

Coding sequence (CDS)

ATGATGTCTATTAGCTCCAATGTGTTTTTTGGAGCCTGTGCTCTCATACTCCTTGGATTGCACTTTGAAACACACCAAATAGATGCAAGGAGTTACTCTATCGTCAGTGAAGACAACTATGTTGTAGAAAACCAATTGACTGACGACAGTATTGAGCACCCAGAGAGATCTCATGGCCGAAACCCAAAAGAGTACTAG

Protein sequence

MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPERSHGRNPKEY
Homology
BLAST of MELO3C035489.jh1 vs. NCBI nr
Match: KAA0038012.1 (hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK02206.1 hypothetical protein E5676_scaffold2454G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.42e-18
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMS SSNV FGACALILLG HFET+ IDAR +S+V E NYV+ENQLTD  IEHP+R
Sbjct: 1  MMSTSSNVLFGACALILLGFHFETYHIDARRFSVVGEGNYVIENQLTDHVIEHPKR 56

BLAST of MELO3C035489.jh1 vs. NCBI nr
Match: KAA0037987.1 (hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.61e-18
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMS SSNV FG CALILLGLHFET+ IDARS+S+  E NYV+ENQLTD  IEHP+R
Sbjct: 8  MMSTSSNVLFGTCALILLGLHFETYHIDARSFSVFGEGNYVIENQLTDHVIEHPKR 63

BLAST of MELO3C035489.jh1 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 5.58e-09
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MMSIS-SNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          M+SIS SNVFFGACA I LGLH   +Q DA++  +V + +  +EN+L+D++I+HP+R
Sbjct: 1  MVSISYSNVFFGACAFIFLGLHSTIYQTDAKNVFVVEKGDSTIENELSDENIKHPKR 57

BLAST of MELO3C035489.jh1 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 4.10e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          M+S+ +N+FF ACALI LGLHFE +  +A+   +V EDN  +EN L  D I HP++
Sbjct: 1  MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKK 56

BLAST of MELO3C035489.jh1 vs. NCBI nr
Match: KAA0043502.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK01137.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.22e-08
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMSISSN+ F  CA++LLGLHF  +Q + R+   V EDN V EN+L  +SI HP++
Sbjct: 1  MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPKQ 56

BLAST of MELO3C035489.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BVE5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00110 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.87e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMS SSNV FGACALILLG HFET+ IDAR +S+V E NYV+ENQLTD  IEHP+R
Sbjct: 1  MMSTSSNVLFGACALILLGFHFETYHIDARRFSVVGEGNYVIENQLTDHVIEHPKR 56

BLAST of MELO3C035489.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T8R0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001740 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.80e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMS SSNV FG CALILLGLHFET+ IDARS+S+  E NYV+ENQLTD  IEHP+R
Sbjct: 8  MMSTSSNVLFGTCALILLGLHFETYHIDARSFSVFGEGNYVIENQLTDHVIEHPKR 63

BLAST of MELO3C035489.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.99e-08
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          M+S+ +N+FF ACALI LGLHFE +  +A+   +V EDN  +EN L  D I HP++
Sbjct: 1  MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKK 56

BLAST of MELO3C035489.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.53e-08
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1  MMSISSNVFFGACALILLGLHFETHQIDARSYSIVSEDNYVVENQLTDDSIEHPER 56
          MMSISSN+ F  CA++LLGLHF  +Q + R+   V EDN V EN+L  +SI HP++
Sbjct: 1  MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPKQ 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038012.11.42e-1875.00hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK0220... [more]
KAA0037987.11.61e-1875.00hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa][more]
XP_038882352.15.58e-0952.63uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0040932.14.10e-0850.00proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
KAA0043502.15.22e-0853.57proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK0113... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BVE56.87e-1975.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T8R07.80e-1975.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CGG11.99e-0850.00Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BP862.53e-0853.57Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035489.jh1.t1MELO3C035489.jh1.t1mRNA