MELO3C035465 (gene) Melon (DHL92) v4

Overview
NameMELO3C035465
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNBS-LRR type resistance protein
Locationchr12: 5185432 .. 5185866 (-)
RNA-Seq ExpressionMELO3C035465
SyntenyMELO3C035465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCAACTTTTAATATGTATAAAAAATAAATAATATTATTTTTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAGTTATAGAACGAACTCTTATGCCCTTATTAATTATCCTCTTTCATTATATATTTTTGCGTCACCTAACTTAGTTTTTAAATTTGTTGTAGAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

mRNA sequence

ATGATTTCAACTTTTAATATGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

Coding sequence (CDS)

ATGATTTCAACTTTTAATATGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGTAGTCTTACAATCATAACAGCGGGTCAAAGTCGTTTCTACAACGACAACACGAGTTCGCTGAGAAAAAGGGGAGTCGCTCGACCGTGTAGAGTTGTTTCAGAAAACACACGTTCGAGCCGAGACGTTCGTATCACAGGTCGCACAGGATGCGCATGTAAAACCAAATGTTGGAACTCCAGTCCTAGCCTACCGCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGCACCGGTGGATTTAG

Protein sequence

MISTFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIRHRWI
Homology
[Close]
BLAST of MELO3C035465 vs. NCBI nr
Match: KAA0041869.1 (gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0 

Query: 18  RSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRTGCACKTKCWN 77
           R    II   QS FYND      KRGV++PC VVS NTRS +D+R+ GR GC CK KCWN
Sbjct: 118 RQKQLIIVVSQSFFYNDTRPHRAKRGVSQPCGVVSTNTRSRQDIRVAGRGGCTCKIKCWN 177

Query: 78  SSPSLPQRVVSHSLRMRYAIRHRWI 103
            SP+LPQRV++HSL  RYA R  WI
Sbjct: 178 FSPNLPQRVLNHSLETRYA-RRCWI 201

[Close]
BLAST of MELO3C035465 vs. NCBI nr
Match: KAA0062189.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-17
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 2   ISTFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDV 61
           ++T +MSNHGRTRLLDRSSLTII  G++RFYND+TS LR++         S++T  S   
Sbjct: 24  MNTCHMSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRK--------ESQSTMWSCFK 83

Query: 62  RITGRTGCACK-------TKCWNSSPSLPQRVVSHSLRMRYAI 98
           + T   G +C+        KCWNS+P+LPQRVVSHSL MRYAI
Sbjct: 84  KHTFELGRSCRRPQRMHIIKCWNSNPNLPQRVVSHSLGMRYAI 118

[Close]
BLAST of MELO3C035465 vs. NCBI nr
Match: KAA0058246.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 59/96 (61.46%), Postives = 65/96 (67.71%), Query Frame = 0 

Query: 8   SNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKR---GVARPC--RVVSENTRSSRDVR 67
           SNHGRTRLLDRSSLTII AG SRFYNDNTSS R++    +   C  +   E  RS R   
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCR--- 230

Query: 68  ITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIR 99
              R       KCWNS+PSLPQRVVSHSLRM+YAIR
Sbjct: 231 ---RPPRMHIIKCWNSNPSLPQRVVSHSLRMKYAIR 260

[Close]
BLAST of MELO3C035465 vs. NCBI nr
Match: TYK28852.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 3   STFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVR 62
           +T + SNHG+TRLLDRSSLTII AG SRFYND+ SSL++          S++   +   +
Sbjct: 106 ATLSKSNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEED--------SQSIVWNCFGK 165

Query: 63  ITGRTGCACK-------TKCWNSSPSLPQRVVSHSLRMRYAIR 99
            T   G +C+        KCWNS+PSLPQRVVSHSLRMRYAIR
Sbjct: 166 HTFELGHSCRRPPRMRIIKCWNSNPSLPQRVVSHSLRMRYAIR 200

[Close]
BLAST of MELO3C035465 vs. NCBI nr
Match: TYK11054.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 0 

Query: 5   FNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRG---VARPCRVV-----SENTR 64
           +  SNHGRTR+LDRS+LTII AG SRFYNDNTSSLR++G   +   C  +       + R
Sbjct: 152 YESSNHGRTRMLDRSNLTIIVAGPSRFYNDNTSSLREKGSRSIVWSCFEIHTFELGRSCR 211

Query: 65  SSRDVRITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIR 99
             + +RI          KCWNS+ SL  RVVSHSLRMRYAIR
Sbjct: 212 RPQRMRI---------IKCWNSNLSLLHRVVSHSLRMRYAIR 244

[Close]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match: A0A5A7TKG2 (Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002570 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0 

Query: 18  RSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVRITGRTGCACKTKCWN 77
           R    II   QS FYND      KRGV++PC VVS NTRS +D+R+ GR GC CK KCWN
Sbjct: 118 RQKQLIIVVSQSFFYNDTRPHRAKRGVSQPCGVVSTNTRSRQDIRVAGRGGCTCKIKCWN 177

Query: 78  SSPSLPQRVVSHSLRMRYAIRHRWI 103
            SP+LPQRV++HSL  RYA R  WI
Sbjct: 178 FSPNLPQRVLNHSLETRYA-RRCWI 201

[Close]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match: A0A5A7V928 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005820 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 2   ISTFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDV 61
           ++T +MSNHGRTRLLDRSSLTII  G++RFYND+TS LR++         S++T  S   
Sbjct: 24  MNTCHMSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRK--------ESQSTMWSCFK 83

Query: 62  RITGRTGCACK-------TKCWNSSPSLPQRVVSHSLRMRYAI 98
           + T   G +C+        KCWNS+P+LPQRVVSHSL MRYAI
Sbjct: 84  KHTFELGRSCRRPQRMHIIKCWNSNPNLPQRVVSHSLGMRYAI 118

[Close]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match: A0A5A7UVP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005710 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.9e-17
Identity = 59/96 (61.46%), Postives = 65/96 (67.71%), Query Frame = 0 

Query: 8   SNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKR---GVARPC--RVVSENTRSSRDVR 67
           SNHGRTRLLDRSSLTII AG SRFYNDNTSS R++    +   C  +   E  RS R   
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCR--- 230

Query: 68  ITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIR 99
              R       KCWNS+PSLPQRVVSHSLRM+YAIR
Sbjct: 231 ---RPPRMHIIKCWNSNPSLPQRVVSHSLRMKYAIR 260

[Close]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match: A0A5D3DZ15 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00610 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 0 

Query: 3   STFNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRGVARPCRVVSENTRSSRDVR 62
           +T + SNHG+TRLLDRSSLTII AG SRFYND+ SSL++          S++   +   +
Sbjct: 106 ATLSKSNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEED--------SQSIVWNCFGK 165

Query: 63  ITGRTGCACK-------TKCWNSSPSLPQRVVSHSLRMRYAIR 99
            T   G +C+        KCWNS+PSLPQRVVSHSLRMRYAIR
Sbjct: 166 HTFELGHSCRRPPRMRIIKCWNSNPSLPQRVVSHSLRMRYAIR 200

[Close]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match: A0A5D3CIP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00370 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.8e-16
Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 0 

Query: 5   FNMSNHGRTRLLDRSSLTIITAGQSRFYNDNTSSLRKRG---VARPCRVV-----SENTR 64
           +  SNHGRTR+LDRS+LTII AG SRFYNDNTSSLR++G   +   C  +       + R
Sbjct: 152 YESSNHGRTRMLDRSNLTIIVAGPSRFYNDNTSSLREKGSRSIVWSCFEIHTFELGRSCR 211

Query: 65  SSRDVRITGRTGCACKTKCWNSSPSLPQRVVSHSLRMRYAIR 99
             + +RI          KCWNS+ SL  RVVSHSLRMRYAIR
Sbjct: 212 RPQRMRI---------IKCWNSNLSLLHRVVSHSLRMRYAIR 244

The following BLAST results are available for this feature:
BLAST of MELO3C035465 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035465 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041869.12.3e-1858.82gamma-aminobutyrate transaminase POP2 [Cucumis melo var. makuwa][more]
KAA0062189.15.6e-1754.37NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0058246.11.6e-1661.46NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK28852.13.7e-1654.37NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK11054.11.8e-1553.92NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TKG21.1e-1858.82Gamma-aminobutyrate transaminase POP2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7V9282.7e-1754.37NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UVP67.9e-1761.46NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DZ151.8e-1654.37NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CIP68.8e-1653.92NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C035465 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035465.1MELO3C035465.1mRNA