MELO3C035459 (gene) Melon (DHL92) v4

Overview
NameMELO3C035459
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionSmall ribosomal subunit protein S13
Locationchr07: 16895037 .. 16895340 (+)
RNA-Seq ExpressionMELO3C035459
SyntenyMELO3C035459
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGTTTCTGGTGTCCAATAAGAAGAGAGACGTTGGTCAATGGAGGGGAAGACATTAGAGGTTTAGTCATGGGTTTCGAGGCGGACAAAAGATATGGTTTTGCACCGTTTACGGAAGCTCCGACGTTCGTTTCAATAGTGTCGCAACGTGTTTAACGACTGGTTTAACCATGGTTTTAGAGCTGTCAAAGGTTGGTTTAGCCATCAGAGGAAGACGTTGGAGTTTCCACGTTAGTGGCAATGAGATTTTTTTAGCAGCATTTGACGGCATCCGACGTTAATCGTGGGTTTGCGGCGGGTTCTAA

mRNA sequence

ACAGTTTCTGGTGTCCAATAAGAAGAGAGACGTTGGTCAATGGAGGGGAAGACATTAGAGGTTTAGTCATGGGTTTCGAGGCGGACAAAAGATATGGTTTTGCACCGTTTACGGAAGCTCCGACGTTCGTTTCAATAGTGTCGCAACGTGTTTAACGACTGGTTTAACCATGGTTTTAGAGCTGTCAAAGGTTGGTTTAGCCATCAGAGGAAGACGTTGGAGTTTCCACGTTAGTGGCAATGAGATTTTTTTAGCAGCATTTGACGGCATCCGACGTTAATCGTGGGTTTGCGGCGGGTTCTAA

Coding sequence (CDS)

ATGGTTTTAGAGCTGTCAAAGGTTGGTTTAGCCATCAGAGGAAGACGTTGGAGTTTCCACGTTAGTGGCAATGAGATTTTTTTAGCAGCATTTGACGGCATCCGACGTTAA

Protein sequence

MVLELSKVGLAIRGRRWSFHVSGNEIFLAAFDGIRR
Homology
[Close]
BLAST of MELO3C035459 vs. NCBI nr
Match: KAA0047526.1 (small ribosomal subunit protein S13 [Cucumis melo var. makuwa] >TYK26495.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 1  MVLELSKVGLAIRGRRWSFHVSGNEIFLAAFDGIRR 37
          +VLE  +VGLAIRGRRWSF VS N++FLAAF+ +RR
Sbjct: 6  IVLEPLEVGLAIRGRRWSFDVSNNKLFLAAFNDVRR 41

[Close]
BLAST of MELO3C035459 vs. NCBI nr
Match: KAA0045600.1 (hypothetical protein E6C27_scaffold243G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MVLELSKVGLAIRGRRWSFHVSGNEIFLAAFD 33
          MVLE  +VGL+I+GRRWSF VSGN++FLAAFD
Sbjct: 34 MVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFD 65

[Close]
BLAST of MELO3C035459 vs. ExPASy TrEMBL
Match: A0A5D3DT03 (Small ribosomal subunit protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00670 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-05
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 1  MVLELSKVGLAIRGRRWSFHVSGNEIFLAAFDGIRR 37
          +VLE  +VGLAIRGRRWSF VS N++FLAAF+ +RR
Sbjct: 6  IVLEPLEVGLAIRGRRWSFDVSNNKLFLAAFNDVRR 41

[Close]
BLAST of MELO3C035459 vs. ExPASy TrEMBL
Match: A0A5A7TR50 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001060 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-04
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MVLELSKVGLAIRGRRWSFHVSGNEIFLAAFD 33
          MVLE  +VGL+I+GRRWSF VSGN++FLAAFD
Sbjct: 34 MVLEPLEVGLSIKGRRWSFDVSGNKLFLAAFD 65

The following BLAST results are available for this feature:
BLAST of MELO3C035459 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047526.11.1e-0469.44small ribosomal subunit protein S13 [Cucumis melo var. makuwa] >TYK26495.1 small... [more]
KAA0045600.13.3e-0475.00hypothetical protein E6C27_scaffold243G001060 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035459 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035459 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DT035.5e-0569.44Small ribosomal subunit protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TR501.6e-0475.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C035459 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035459.1MELO3C035459.1mRNA