MELO3C035424.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035424.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionBeta-galactosidase
Locationchr12: 12950776 .. 12951318 (-)
RNA-Seq ExpressionMELO3C035424.jh1
SyntenyMELO3C035424.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAATGTTGACACTAACGGAACATTTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATCGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGGGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGCTATAGTGTCAACGGGAATAGATGGAGGTCTTATCTATCTAATTGGAGATGGAAACACGAAAACTGATCTATCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGTTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATAG

mRNA sequence

ATGACGAATGTTGACACTAACGGAACATTTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATCGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGGGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGCTATAGTGTCAACGGGAATAGATGGAGGTCTTATCTATCTAATTGGAGATGGAAACACGAAAACTGATCTATCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGTTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATAG

Coding sequence (CDS)

ATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGTTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATA

Protein sequence

MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI
Homology
[Close]
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match: XP_008465565.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 124 bits (311), Expect = 1.20e-31
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 256 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPGGIDPVVLDMQGMGKGQAWVNGQ 315

Query: 61  SI 62
           SI
Sbjct: 316 SI 317

[Close]
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match: KAA0062481.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 1.49e-31
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match: TYK27403.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 1.49e-31
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match: KAA0046419.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 3.55e-31
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWI+LNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 516 MKQIYNPMFSQRTNWISLNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 575

Query: 61  SI 62
           SI
Sbjct: 576 SI 577

[Close]
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match: XP_031741738.1 (beta-galactosidase 7-like [Cucumis sativus])

HSP 1 Score: 124 bits (310), Expect = 5.19e-31
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALN+KSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNKKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match: Q10NX8 (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-10
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 4   IYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           +YNP       W++ N     + +IWY   F  P G DPV +D  GMGKG+AWVNGQSI
Sbjct: 614 LYNPS-EASPEWVSDNAYPTNQPLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSI 671

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match: Q9SCV5 (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-09
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 24  GRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           GR + WY A FK P+G +PV++D+ G+GKG+AW+NGQSI
Sbjct: 619 GRMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSI 657

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match: P49676 (Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-09
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 25  RRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           R + WY A+FK P+G DPV++D+ G+GKG+ W+NGQSI
Sbjct: 622 RMLSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSI 659

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match: Q9SCV3 (Beta-galactosidase 9 OS=Arabidopsis thaliana OX=3702 GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  P G DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match: Q00662 (Putative beta-galactosidase OS=Dianthus caryophyllus OX=3570 GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 2   KQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQS 61
           +Q+YN   S    W      +  + ++WY  +F  P G DP+ LD+  MGKGQAW+NGQS
Sbjct: 599 QQVYNSGGSSHVQW---GPPAWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQS 656

Query: 62  I 63
           I
Sbjct: 659 I 656

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CP60 (beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 5.82e-32
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 256 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPGGIDPVVLDMQGMGKGQAWVNGQ 315

Query: 61  SI 62
           SI
Sbjct: 316 SI 317

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DUP4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00870 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 7.23e-32
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00750 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 7.23e-32
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYV0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001650 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.72e-31
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWI+LNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 516 MKQIYNPMFSQRTNWISLNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 575

Query: 61  SI 62
           SI
Sbjct: 576 SI 577

[Close]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UNA7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001360 PE=3 SV=1)

HSP 1 Score: 124 bits (310), Expect = 2.51e-31
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNP+FSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPIFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 62
           SI
Sbjct: 650 SI 651

[Close]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match: AT5G20710.1 (beta-galactosidase 7 )

HSP 1 Score: 63.2 bits (152), Expect = 8.7e-11
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 24  GRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           GR + WY A FK P+G +PV++D+ G+GKG+AW+NGQSI
Sbjct: 619 GRMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSI 657

[Close]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match: AT2G32810.1 (beta galactosidase 9 )

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  P G DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match: AT2G32810.2 (beta galactosidase 9 )

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  P G DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match: AT1G77410.1 (beta-galactosidase 16 )

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0 

Query: 4   IYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           +Y    S +  W    + S  + + WY ASF TP G DPV L++  MGKG+AWVNGQSI
Sbjct: 586 VYTEDGSAKVQW-KQYRDSKSQPLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSI 643

[Close]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match: AT1G45130.1 (beta-galactosidase 5 )

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-08
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 0 

Query: 4   IYNPMFSQRTNWIALN-QKSIGRRMIWYMASFKTPVGIDPVVLDMQGMGKGQAWVNGQSI 63
           + +P      +WI  +  K   + + WY A F  P G +P+ LD++ MGKGQAW+NGQSI
Sbjct: 600 LVSPTEDSSVDWIKGSLAKQNKQPLTWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSI 659

The following BLAST results are available for this feature:
BLAST of MELO3C035424.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465565.11.20e-3193.55PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo][more]
KAA0062481.11.49e-3193.55beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
TYK27403.11.49e-3193.55beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
KAA0046419.13.55e-3191.94beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
XP_031741738.15.19e-3191.94beta-galactosidase 7-like [Cucumis sativus][more]
BLAST of MELO3C035424.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q10NX83.2e-1047.46Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE... [more]
Q9SCV51.2e-0958.97Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2[more]
P496768.0e-0957.89Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1[more]
Q9SCV31.0e-0841.67Beta-galactosidase 9 OS=Arabidopsis thaliana OX=3702 GN=BGAL9 PE=2 SV=1[more]
Q006622.3e-0842.62Putative beta-galactosidase OS=Dianthus caryophyllus OX=3570 GN=CARSR12 PE=2 SV=... [more]
BLAST of MELO3C035424.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CP605.82e-3293.55beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1[more]
A0A5D3DUP47.23e-3293.55Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0... [more]
A0A5A7V9Y97.23e-3293.55Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0... [more]
A0A5A7TYV01.72e-3191.94Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0... [more]
A0A5A7UNA72.51e-3191.94Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G0... [more]
BLAST of MELO3C035424.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G20710.18.7e-1158.97beta-galactosidase 7 [more]
AT2G32810.17.4e-1041.67beta galactosidase 9 [more]
AT2G32810.27.4e-1041.67beta galactosidase 9 [more]
AT1G77410.12.1e-0947.46beta-galactosidase 16 [more]
AT1G45130.12.4e-0841.67beta-galactosidase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.260coord: 1..62
e-value: 4.2E-7
score: 32.1
NoneNo IPR availablePANTHERPTHR23421:SF88BETA-GALACTOSIDASE 14coord: 2..62
IPR001944Glycoside hydrolase, family 35PANTHERPTHR23421BETA-GALACTOSIDASE RELATEDcoord: 2..62
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 12..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035424.jh1.t1MELO3C035424.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds