MELO3C035424 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035424
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Beta-galactosidase
Location	chr12: 12656115 .. 12656657 (-)
RNA-Seq Expression	MELO3C035424
Synteny	MELO3C035424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAATGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATTGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGAGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGTTATAGTGTCAACGGGAATAGATGGAGGTCTTATCTATCTAATTGGAGATGGAAACACGAAAACTGATCTATCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATAG

mRNA sequence

ATGACGAATGTTGACACTAACGGAACATCTTCACTTCAAAATGTGACTCTCTAAGTGAATACAAAGGGTCATGTGCTTTATGCTTTCGTTAATAAAAGATACATTGGGTCGCAATGGGAGAGAAATGACCTGAGTTTTGTGTTTGAGAAACCTATGAGAAACCCATTCTACTAAAATCGAGAACCAACACAATAACTCTTTTGACTGCCACAATTGGGTTGAAGAATTACGACGCATTTTATGTTATAGTGTCAACGGGAATAGATGGAGGTCTTATCTATCTAATTGGAGATGGAAACACGAAAACTGATCTATCATCAAATTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATAG

Coding sequence (CDS)

ATGAAACAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCACTAAATCAAAAGTCTATTGGAAGGCGAATGATATGGTACATGGCTAGCTTTAAGACACCTGCTGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATA

Protein sequence

MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI

Homology

[Close]

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot
Match: Q10NX8 (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 4   IYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           +YNP       W++ N     + +IWY   F  PAG DPV +D  GMGKG+AWVNGQSI
Sbjct: 614 LYNPS-EASPEWVSDNAYPTNQPLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSI 671

[Close]

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot
Match: Q9SCV5 (Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-09
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 24  GRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           GR + WY A FK P G +PV++D+ G+GKG+AW+NGQSI
Sbjct: 619 GRMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSI 657

[Close]

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot
Match: Q9SCV3 (Beta-galactosidase 9 OS=Arabidopsis thaliana OX=3702 GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-09
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  PAG DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot
Match: Q00662 (Putative beta-galactosidase OS=Dianthus caryophyllus OX=3570 GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-08
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 2   KQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQS 61
           +Q+YN   S    W      +  + ++WY  +F  P G DP+ LD+  MGKGQAW+NGQS
Sbjct: 599 QQVYNSGGSSHVQW---GPPAWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQS 656

Query: 62  I 63
           I
Sbjct: 659 I 656

[Close]

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot
Match: P49676 (Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-08
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 25  RRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           R + WY A+FK P G DPV++D+ G+GKG+ W+NGQSI
Sbjct: 622 RMLSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSI 659

[Close]

BLAST of MELO3C035424 vs. NCBI nr
Match: KAA0062481.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. NCBI nr
Match: TYK27403.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. NCBI nr
Match: KAA0046419.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWI+LNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 516 MKQIYNPMFSQRTNWISLNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 575

Query: 61  SI 63
           SI
Sbjct: 576 SI 577

[Close]

BLAST of MELO3C035424 vs. NCBI nr
Match: XP_008465565.1 (PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 256 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPGGIDPVVLDMQGMGKGQAWVNGQ 315

Query: 61  SI 63
           SI
Sbjct: 316 SI 317

[Close]

BLAST of MELO3C035424 vs. NCBI nr
Match: XP_031741738.1 (beta-galactosidase 7-like [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALN+KSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNKKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. ExPASy TrEMBL
Match: A0A5D3DUP4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00870 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. ExPASy TrEMBL
Match: A0A5A7V9Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00750 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. ExPASy TrEMBL
Match: A0A5A7TYV0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001650 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWI+LNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 516 MKQIYNPMFSQRTNWISLNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 575

Query: 61  SI 63
           SI
Sbjct: 576 SI 577

[Close]

BLAST of MELO3C035424 vs. ExPASy TrEMBL
Match: A0A5A7UNA7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001360 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNP+FSQRTNWIALNQKSIGRRM WY  SFKTPAGIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 590 MKQIYNPIFSQRTNWIALNQKSIGRRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQ 649

Query: 61  SI 63
           SI
Sbjct: 650 SI 651

[Close]

BLAST of MELO3C035424 vs. ExPASy TrEMBL
Match: A0A1S3CP60 (beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MKQIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQ 60
           MKQIYNPMFSQRTNWIALNQKSIGRRM WY  SFKTP GIDPVVLDMQGMGKGQAWVNGQ
Sbjct: 256 MKQIYNPMFSQRTNWIALNQKSIGRRMTWYKTSFKTPGGIDPVVLDMQGMGKGQAWVNGQ 315

Query: 61  SI 63
           SI
Sbjct: 316 SI 317

[Close]

BLAST of MELO3C035424 vs. TAIR 10
Match: AT5G20710.1 (beta-galactosidase 7 )

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 24  GRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           GR + WY A FK P G +PV++D+ G+GKG+AW+NGQSI
Sbjct: 619 GRMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSI 657

[Close]

BLAST of MELO3C035424 vs. TAIR 10
Match: AT2G32810.1 (beta galactosidase 9 )

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  PAG DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]

BLAST of MELO3C035424 vs. TAIR 10
Match: AT2G32810.2 (beta galactosidase 9 )

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-10
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 3   QIYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 62
           +IY    +++  W  L   +     +WY   F  PAG DPVVL+++ MG+GQAWVNGQ I
Sbjct: 627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHI 686

[Close]

BLAST of MELO3C035424 vs. TAIR 10
Match: AT1G77410.1 (beta-galactosidase 16 )

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 4   IYNPMFSQRTNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           +Y    S +  W    + S  + + WY ASF TP G DPV L++  MGKG+AWVNGQSI
Sbjct: 586 VYTEDGSAKVQW-KQYRDSKSQPLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSI 643

[Close]

BLAST of MELO3C035424 vs. TAIR 10
Match: AT2G28470.1 (beta-galactosidase 8 )

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-09
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 13  TNWIALNQKSIGRRMIWYMASFKTPAGIDPVVLDMQGMGKGQAWVNGQSI 63
           + W++ +     + +IWY  +F  P+G +PV +D  G GKG AWVNGQSI
Sbjct: 613 SEWVSKSPLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSI 662

The following BLAST results are available for this feature:

BLAST of MELO3C035424 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10NX8	1.1e-10	49.15	Beta-galactosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0255100 PE...	[more]
Q9SCV5	2.1e-09	58.97	Beta-galactosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BGAL7 PE=2 SV=2	[more]
Q9SCV3	3.6e-09	43.33	Beta-galactosidase 9 OS=Arabidopsis thaliana OX=3702 GN=BGAL9 PE=2 SV=1	[more]
Q00662	1.0e-08	42.62	Putative beta-galactosidase OS=Dianthus caryophyllus OX=3570 GN=CARSR12 PE=2 SV=...	[more]
P49676	1.4e-08	57.89	Beta-galactosidase OS=Brassica oleracea OX=3712 PE=2 SV=1	[more]

BLAST of MELO3C035424 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062481.1	2.4e-26	95.16	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
TYK27403.1	2.4e-26	95.16	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
KAA0046419.1	5.3e-26	93.55	beta-galactosidase 7-like [Cucumis melo var. makuwa]	[more]
XP_008465565.1	6.9e-26	93.55	PREDICTED: beta-galactosidase 7-like, partial [Cucumis melo]	[more]
XP_031741738.1	6.9e-26	93.55	beta-galactosidase 7-like [Cucumis sativus]	[more]

BLAST of MELO3C035424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUP4	1.1e-26	95.16	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0...	[more]
A0A5A7V9Y9	1.1e-26	95.16	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7TYV0	2.6e-26	93.55	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0...	[more]
A0A5A7UNA7	3.3e-26	93.55	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G0...	[more]
A0A1S3CP60	3.3e-26	93.55	beta-galactosidase 7-like OS=Cucumis melo OX=3656 GN=LOC103503198 PE=4 SV=1	[more]

BLAST of MELO3C035424 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20710.1	1.5e-10	58.97	beta-galactosidase 7	[more]
AT2G32810.1	2.5e-10	43.33	beta galactosidase 9	[more]
AT2G32810.2	2.5e-10	43.33	beta galactosidase 9	[more]
AT1G77410.1	1.6e-09	47.46	beta-galactosidase 16	[more]
AT2G28470.1	8.2e-09	44.00	beta-galactosidase 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001944	Glycoside hydrolase, family 35	PRINTS	PR00742	GLHYDRLASE35	coord: 52..62 score: 42.91 coord: 25..39 score: 33.73
IPR001944	Glycoside hydrolase, family 35	PANTHER	PTHR23421	BETA-GALACTOSIDASE RELATED	coord: 2..62
None	No IPR available	GENE3D	2.60.120.260		coord: 1..62 e-value: 1.9E-7 score: 33.2
None	No IPR available	PANTHER	PTHR23421:SF88	BETA-GALACTOSIDASE 14	coord: 2..62
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 12..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035424.1	MELO3C035424.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds