MELO3C035420 (gene) Melon (DHL92) v4

Overview
NameMELO3C035420
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptiontRNA-uridine aminocarboxypropyltransferase
Locationchr11: 18173857 .. 18174214 (+)
RNA-Seq ExpressionMELO3C035420
SyntenyMELO3C035420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACGGCCACTCCTCCACCTCTAAACCAACGGAAACTCCGATCACCTTGCAGGAATGGCAGGGTTGGGGCTCCACCTCTCCTGTTCCCACCATGGTTACGGAAATTATCGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTCTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTTTATATCCCTTGCAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGCCAACTTGGAATTTTAG

mRNA sequence

CGACGGCCACTCCTCCACCTCTAAACCAACGGAAACTCCGATCACCTTGCAGGAATGGCAGGGTTGGGGCTCCACCTCTCCTGTTCCCACCATGGTTACGGAAATTATCGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTCTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTTTATATCCCTTGCAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGCCAACTTGGAATTTTAG

Coding sequence (CDS)

ATGGTTACGGAAATTATCGACGAATTGAAGGTCTTGGAGAAAAATGTTGATGCCCAAATGAGTTTTGGTGGTAATGGCGGCAAACTTCAGGTTTGCCACAAACCCATTGGATATGTTTTCCGCCTCTTCTTTTACTTTGTTACGTCTTGGTTGATACTGCAACAGAGTCTATTAAATCCTATACTCAATTATTGTTTTTATATCCCTTGCAATCATTCAACTCATCTAGATATTGCTAATGGAGTAAACGCCAACTTGGAATTTTAG

Protein sequence

MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNPILNYCFYIPCNHSTHLDIANGVNANLEF
Homology
[Close]
BLAST of MELO3C035420 vs. NCBI nr
Match: XP_016900530.1 (PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0 

Query: 1   MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 60
           MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP
Sbjct: 64  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 123

Query: 61  ILNYCFYIPCNHSTHLDIANGVNAN 86
           ILNYCFYIPCNHSTHLDIANGVN N
Sbjct: 124 ILNYCFYIPCNHSTHLDIANGVNNN 148

[Close]
BLAST of MELO3C035420 vs. NCBI nr
Match: TYK04950.1 (DTW domain-containing protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 62/88 (70.45%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 1   MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 60
           MVTEIIDELKVLEKNVDAQMSFGGNGGKL                         QSLLNP
Sbjct: 65  MVTEIIDELKVLEKNVDAQMSFGGNGGKL-------------------------QSLLNP 124

Query: 61  ILNYCFYIPCNHSTHLDIANGVNANLEF 89
           ILNYCFYIPCNHSTHLDIANGVN NLEF
Sbjct: 125 ILNYCFYIPCNHSTHLDIANGVNGNLEF 127

[Close]
BLAST of MELO3C035420 vs. NCBI nr
Match: TYK04959.1 (DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ
Sbjct: 39 MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 68

[Close]
BLAST of MELO3C035420 vs. NCBI nr
Match: KAA0062059.1 (DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ
Sbjct: 65 MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 94

[Close]
BLAST of MELO3C035420 vs. NCBI nr
Match: KAA0062070.1 (DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKN+DAQMSFGGNGGKLQ
Sbjct: 65 MVTEIIDELKVLEKNLDAQMSFGGNGGKLQ 94

[Close]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match: A0A1S4DXU3 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC103490622 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0 

Query: 1   MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 60
           MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP
Sbjct: 64  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 123

Query: 61  ILNYCFYIPCNHSTHLDIANGVNAN 86
           ILNYCFYIPCNHSTHLDIANGVN N
Sbjct: 124 ILNYCFYIPCNHSTHLDIANGVNNN 148

[Close]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match: A0A5D3C0R0 (DTW domain-containing protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001640 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 62/88 (70.45%), Postives = 62/88 (70.45%), Query Frame = 0 

Query: 1   MVTEIIDELKVLEKNVDAQMSFGGNGGKLQVCHKPIGYVFRLFFYFVTSWLILQQSLLNP 60
           MVTEIIDELKVLEKNVDAQMSFGGNGGKL                         QSLLNP
Sbjct: 65  MVTEIIDELKVLEKNVDAQMSFGGNGGKL-------------------------QSLLNP 124

Query: 61  ILNYCFYIPCNHSTHLDIANGVNANLEF 89
           ILNYCFYIPCNHSTHLDIANGVN NLEF
Sbjct: 125 ILNYCFYIPCNHSTHLDIANGVNGNLEF 127

[Close]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match: A0A5A7V8P4 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004010 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ
Sbjct: 65 MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 94

[Close]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match: A0A5D3C3K0 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001780 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ
Sbjct: 39 MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 68

[Close]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match: A0A5A7V444 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004170 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1  MVTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          MVTEIIDELKVLEKN+DAQMSFGGNGGKLQ
Sbjct: 65 MVTEIIDELKVLEKNLDAQMSFGGNGGKLQ 94

[Close]
BLAST of MELO3C035420 vs. TAIR 10
Match: AT1G03687.1 (DTW domain-containing protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 2  VTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          V +I+D+LKVLE  +D+ + FGGNGGKLQ
Sbjct: 70 VKQIVDDLKVLECKLDSPIDFGGNGGKLQ 98

[Close]
BLAST of MELO3C035420 vs. TAIR 10
Match: AT1G03687.2 (DTW domain-containing protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 2  VTEIIDELKVLEKNVDAQMSFGGNGGKLQ 31
          V +I+D+LKVLE  +D+ + FGGNGGKLQ
Sbjct: 70 VKQIVDDLKVLECKLDSPIDFGGNGGKLQ 98

The following BLAST results are available for this feature:
BLAST of MELO3C035420 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900530.12.2e-4198.82PREDICTED: uncharacterized protein LOC103490622 [Cucumis melo][more]
TYK04950.13.5e-2370.45DTW domain-containing protein isoform 1 [Cucumis melo var. makuwa][more]
TYK04959.12.3e-06100.00DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa][more]
KAA0062059.12.3e-06100.00DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa][more]
KAA0062070.15.0e-0696.67DTW domain-containing protein isoform 2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DXU31.1e-4198.82tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo OX=3656 GN=LOC1034906... [more]
A0A5D3C0R01.7e-2370.45DTW domain-containing protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7V8P41.1e-06100.00tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5D3C3K01.1e-06100.00tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7V4442.4e-0696.67tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of MELO3C035420 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03687.12.3e-0462.07DTW domain-containing protein [more]
AT1G03687.22.3e-0462.07DTW domain-containing protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035420.1MELO3C035420.1mRNA