MELO3C035412 (gene) Melon (DHL92) v4

Overview
NameMELO3C035412
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr12: 11326226 .. 11326562 (+)
RNA-Seq ExpressionMELO3C035412
SyntenyMELO3C035412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGAAGAAGTTGAACTTGAAGAAGTTTACCATAATGTGGAAGAAGTGCCACCTATGACACAGACACAGAGCCAAACTGATTATGGTAGTTCGATGATGATGATACCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCAGTACATGATATTATGATTTAGGGTCGGTCCATCGTCTTTGTACAGGGATGGACACAGACGTGGTCATGGAGAACATAATAAATATTTGTACTATGAAGCACCTGTAGAGGTATAAGATCGACAAGAGTACCAACAAGAACCAGAGAACAAGAGGGGTTAGAACAACATAGAGTTTAGAATTGACGGCGACAACCA

mRNA sequence

GTGGAAGAAGTTGAACTTGAAGAAGTTTACCATAATGTGGAAGAAGTGCCACCTATGACACAGACACAGAGCCAAACTGATTATGGTAGTTCGATGATGATGATACCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCAGTACATGATATTATGATTTAGGGTCGGTCCATCGTCTTTGTACAGGGATGGACACAGACGTGGTCATGGAGAACATAATAAATATTTGTACTATGAAGCACCTGTAGAGGTATAAGATCGACAAGAGTACCAACAAGAACCAGAGAACAAGAGGGGTTAGAACAACATAGAGTTTAGAATTGACGGCGACAACCA

Coding sequence (CDS)

ATGACACAGACACAGAGCCAAACTGATTATGGTAGTTCGATGATGATGATACCAACATTTGGAGCAGGATATTGTGATTCTAAGGTCAGTACATGA

Protein sequence

MTQTQSQTDYGSSMMMIPTFGAGYCDSKVST
Homology
[Close]
BLAST of MELO3C035412 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS MMM+PTFGAGYCDS+VST
Sbjct: 37 TQTQSQTGYGSPMMMMPTFGAGYCDSEVST 66

[Close]
BLAST of MELO3C035412 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDSK+ T
Sbjct: 43 TQTQSQTGYGSPMTMMPTFGAGYCDSKIGT 72

[Close]
BLAST of MELO3C035412 vs. NCBI nr
Match: KAA0061327.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 37 TQTQSQTGYGSPMTMMPTFGAGYCDSEVDT 66

[Close]
BLAST of MELO3C035412 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2   TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
           TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 294 TQTQSQTGYGSPMTMMPTFGAGYCDSEVGT 323

[Close]
BLAST of MELO3C035412 vs. NCBI nr
Match: KAA0062992.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 37 TQTQSQTGYGSPMTMMPTFGAGYCDSEVDT 66

[Close]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.5e-06
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS MMM+PTFGAGYCDS+VST
Sbjct: 37 TQTQSQTGYGSPMMMMPTFGAGYCDSEVST 66

[Close]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-05
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDSK+ T
Sbjct: 43 TQTQSQTGYGSPMTMMPTFGAGYCDSKIGT 72

[Close]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match: A0A5A7VF28 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001390 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2   TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
           TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 77  TQTQSQTGYGSPMTMMPTFGAGYCDSEVGT 106

[Close]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 37 TQTQSQTGYGSPMTMMPTFGAGYCDSEVDT 66

[Close]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match: A0A5A7V379 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29891G00010 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 2  TQTQSQTDYGSSMMMIPTFGAGYCDSKVST 32
          TQTQSQT YGS M M+PTFGAGYCDS+V T
Sbjct: 37 TQTQSQTGYGSPMTMMPTFGAGYCDSEVDT 66

The following BLAST results are available for this feature:
BLAST of MELO3C035412 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035412 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049532.12.0e-0586.67GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK01111.11.3e-0480.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0061327.12.8e-0480.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0041168.12.8e-0480.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0062992.12.8e-0480.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CXX39.5e-0686.67GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3BMS36.2e-0580.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7VF281.4e-0480.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7V4M11.4e-0480.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
A0A5A7V3791.4e-0480.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C035412 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035412.1MELO3C035412.1mRNA