MELO3C035409.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035409.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionZinc finger, CCHC-type
Locationchr12: 10924223 .. 10924646 (+)
RNA-Seq ExpressionMELO3C035409.jh1
SyntenyMELO3C035409.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAATATATTGATGCTATTACGTAATTATTGTGTAGGATGGAATGATAACATTAAAAAGCACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAGGGGGAAAGAACAAGGTTGGGGACCAAGACCTAAGAATGCTAGAAATGAAGCAATTCAACAAAGCACAAAAGAAACTGATAAGATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATAA

mRNA sequence

TAGAATATATTGATGCTATTACGTAATTATTGTGTAGGATGGAATGATAACATTAAAAAGCACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAGGGGGAAAGAACAAGGTTGGGGACCAAGACCTAAGAATGCTAGAAATGAAGCAATTCAACAAAGCACAAAAGAAACTGATAAGATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATAA

Coding sequence (CDS)

ATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATA

Protein sequence

MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
Homology
BLAST of MELO3C035409.jh1 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (349), Expect = 6.40e-37
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW NIQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFSVFNKELELQESLGHPRII 81
           RFSVFNKELELQESLGHPR+I
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

BLAST of MELO3C035409.jh1 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (349), Expect = 1.04e-36
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW NIQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFSVFNKELELQESLGHPRII 81
           RFSVFNKELELQESLGHPR+I
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

BLAST of MELO3C035409.jh1 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 3.11e-23
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACL 58
           MLNSEA+TNSNEEENETHAGNSWENIQSQTNQEAII+TQGSM KARAKR QD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

BLAST of MELO3C035409.jh1 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 7.64e-15
Identity = 52/87 (59.77%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-- 60
           MLNSE       EENETHAGNSWENIQSQTNQEAII+TQGSM KARAKR QD LN  +  
Sbjct: 784 MLNSE-------EENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLNELIVN 843

Query: 61  ---------QARFSVFNKELELQESLG 76
                     A F  F  EL L+ S G
Sbjct: 844 LPTNFNDPTSADFQKFMFELALELSGG 863

BLAST of MELO3C035409.jh1 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 2.18e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQD 52
           MLN+EA+TNSNE+ENE H GNSWEN Q QTNQEAI+  Q SM KARAK  QD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIM-AQCSMTKARAKILQD 111

BLAST of MELO3C035409.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 3.10e-37
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW NIQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 428

Query: 61  RFSVFNKELELQESLGHPRII 81
           RFSVFNKELELQESLGHPR+I
Sbjct: 429 RFSVFNKELELQESLGHPRLI 449

BLAST of MELO3C035409.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 5.03e-37
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQA 60
           MLN+EAYTNSN+EENETHA NSW NIQ QTNQE II+TQGSM KARAKRF+DELNACLQA
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQGSMTKARAKRFRDELNACLQA 464

Query: 61  RFSVFNKELELQESLGHPRII 81
           RFSVFNKELELQESLGHPR+I
Sbjct: 465 RFSVFNKELELQESLGHPRLI 485

BLAST of MELO3C035409.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 1.50e-23
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACL 58
           MLNSEA+TNSNEEENETHAGNSWENIQSQTNQEAII+TQGSM KARAKR QD LNACL
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDRLNACL 492

BLAST of MELO3C035409.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.70e-15
Identity = 52/87 (59.77%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-- 60
           MLNSE       EENETHAGNSWENIQSQTNQEAII+TQGSM KARAKR QD LN  +  
Sbjct: 784 MLNSE-------EENETHAGNSWENIQSQTNQEAIIMTQGSMTKARAKRLQDGLNELIVN 843

Query: 61  ---------QARFSVFNKELELQESLG 76
                     A F  F  EL L+ S G
Sbjct: 844 LPTNFNDPTSADFQKFMFELALELSGG 863

BLAST of MELO3C035409.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.05e-12
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 1   MLNSEAYTNSNEEENETHAGNSWENIQSQTNQEAIIITQGSMIKARAKRFQD 52
           MLN+EA+TNSNE+ENE H GNSWEN Q QTNQEAI+  Q SM KARAK  QD
Sbjct: 61  MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIM-AQCSMTKARAKILQD 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK15114.16.40e-3787.65Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.11.04e-3687.65reverse transcriptase [Cucumis melo var. makuwa][more]
TYK19543.13.11e-2391.38Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0036753.17.64e-1559.77hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820... [more]
TYK14528.12.18e-1273.08integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CW053.10e-3787.65Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL95.03e-3787.65Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
A0A5D3D7R51.50e-2391.38Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3B7443.70e-1559.77Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CTJ11.05e-1273.08Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035409.jh1.t1MELO3C035409.jh1.t1mRNA