MELO3C035400 (gene) Melon (DHL92) v4

Overview
NameMELO3C035400
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr12: 3319690 .. 3320250 (-)
RNA-Seq ExpressionMELO3C035400
SyntenyMELO3C035400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAACCACGGAATCAACCAAAATAAACTTACGGGTGTTTATCCTTGATACAGATCCAGCAATGGCGTGCAACAGTAGAGATGATCGACGGAGCAGACGAAAACCGGTGGCTGACGACCTCTCAGATCGATGGTGGCTGGTGAACGAGGTTAAATGTCCAACCTTTTCAAAAGGGAGAAAAAGGCACTAAAAGTTGTTGGAACGTCAGTGATGAAGAGCTCCGACGGAGAGGAAGGCCGCCGTCACTGCTGGCCGCCGTAGGTCTTGCACGACCGAGGGGAGAAAAACTCGCCGGAGAAGAAGACTTCAAAGACGGCGTGGCTGGGGCTGCCGCAGACTGTGACGGAGCGAAAAAGAGAAAAATAGAAAAAAATAAAAATGATGATTTTAGGGCTTATTTTATTTAATTACTTCTTTCTTTATGAAATAATTATACTGACAAAATTTTGGAAAACTATCTACCAAAACACAAAAATATTTATGCTCATATAACAAAAATTTTTAAATATTCCAACACTTTCATCTTTCTAGTGATTTCTTTCTTCTTTTCATCGGTCT

mRNA sequence

ATGAATAACCACGGAATCAACCAAAATAAACTTACATCCAGCAATGGCGTGCAACAGTAGAGATGATCGACGGAGCAGACGAAAACCGGTGGCTGACGACCTCTCAGATCGATGGTGGCTGGTGAACGAGGGAGAAAAAGGCACTAAAAGTTGTTGGAACGTCAGTGATGAAGAGCTCCGACGGAGAGGAAGGCCGCCGTCACTGCTGGCCGCCGTAGGTCTTGCACGACCGAGGGGAGAAAAACTCGCCGGAGAAGAAGACTTCAAAGACGGCGTGGCTGGGGCTGCCGCAGACTGTGACGGAGCGAAAAAGAGAAAAATAGAAAAAAATAAAAATGATGATTTTAGGGCTTATTTTATTTAATTACTTCTTTCTTTATGAAATAATTATACTGACAAAATTTTGGAAAACTATCTACCAAAACACAAAAATATTTATGCTCATATAACAAAAATTTTTAAATATTCCAACACTTTCATCTTTCTAGTGATTTCTTTCTTCTTTTCATCGGTCT

Coding sequence (CDS)

ATGGCGTGCAACAGTAGAGATGATCGACGGAGCAGACGAAAACCGGTGGCTGACGACCTCTCAGATCGATGGTGGCTGGTGAACGAGGGAGAAAAAGGCACTAAAAGTTGTTGGAACGTCAGTGATGAAGAGCTCCGACGGAGAGGAAGGCCGCCGTCACTGCTGGCCGCCGTAGGTCTTGCACGACCGAGGGGAGAAAAACTCGCCGGAGAAGAAGACTTCAAAGACGGCGTGGCTGGGGCTGCCGCAGACTGTGACGGAGCGAAAAAGAGAAAAATAGAAAAAAATAAAAATGATGATTTTAGGGCTTATTTTATTTAA

Protein sequence

MACNSRDDRRSRRKPVADDLSDRWWLVNEGEKGTKSCWNVSDEELRRRGRPPSLLAAVGLARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI
Homology
[Close]
BLAST of MELO3C035400 vs. NCBI nr
Match: KAA0032833.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21207.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 88/106 (83.02%), Postives = 88/106 (83.02%), Query Frame = 0 

Query: 1   MACNSRDDRRSRRKPVADDLSDRWWLVNEGEKGTKSCWNVSDEELRRRGRPPSLLAAVGL 60
           MACNSRDDRRSRRKPVADDLSDR                  DEELRRRGRPPSLLAAVGL
Sbjct: 273 MACNSRDDRRSRRKPVADDLSDR-----------------CDEELRRRGRPPSLLAAVGL 332

Query: 61  ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI 107
           ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI
Sbjct: 333 ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI 361

[Close]
BLAST of MELO3C035400 vs. ExPASy TrEMBL
Match: A0A5A7SQY4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00130 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 88/106 (83.02%), Postives = 88/106 (83.02%), Query Frame = 0 

Query: 1   MACNSRDDRRSRRKPVADDLSDRWWLVNEGEKGTKSCWNVSDEELRRRGRPPSLLAAVGL 60
           MACNSRDDRRSRRKPVADDLSDR                  DEELRRRGRPPSLLAAVGL
Sbjct: 273 MACNSRDDRRSRRKPVADDLSDR-----------------CDEELRRRGRPPSLLAAVGL 332

Query: 61  ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI 107
           ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI
Sbjct: 333 ARPRGEKLAGEEDFKDGVAGAAADCDGAKKRKIEKNKNDDFRAYFI 361

The following BLAST results are available for this feature:
BLAST of MELO3C035400 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032833.11.3e-3783.02retrotransposon protein [Cucumis melo var. makuwa] >TYK21207.1 retrotransposon p... [more]
BLAST of MELO3C035400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SQY46.5e-3883.02Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C035400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035400.1MELO3C035400.1mRNA