MELO3C035393.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035393.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptiontranslation initiation factor eIF-2B subunit gamma
Locationchr12: 3284810 .. 3289387 (-)
RNA-Seq ExpressionMELO3C035393.jh1
SyntenyMELO3C035393.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGTTATTTATCTTCTTCTCTAAGATAACCCTCTGCTGTCACCGCCTCACCAGTTTTAGTTAAGATTGGTCTCTTTGGCAAAGCTTGAAGATTTAAAGTCATGAATTTTTCCATCAAGGATAAGAGGATTTTTCAATCTCCATTTGAGTAACCTTGGTAAGCTAATGAAATTAAATTAATATTTTGTTAATTTAATTTTGAATCTATTTGGAGTTTCTTTAAAGGTTCTATTGGCTAATTGTTGAAGAATTAATCTTGGGTTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCAAATTTTTAGAAAGTTAATTAATTTGGGAGAATTTTTGGATGTTAGCCAATTGCTAATTTTATTAATTAAGATACTAAGTTTTTCTTTTATGATTAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTACTACTGGACCTTCGAACTGAATTTAAGAAACTGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGGATAATTTGATGTTATTGATAATGACTGTCATTGTATTGATGATTGATGATGATGACTGATATTATGTTGATGACTGTTGATGTTCATGTTGATGCATGATATATTAATCACATGATTAAGGACATTAAGATTAATACTCATGCCATGTTTATGATGTTATATTATGCTACATGCTATGGATAAGGTGTTTTGTTAACTATGTCTATTAGAGTCGTACCCGCATGGGTGTCCTTCGGGATCACCACCTTTTTAAGACTGCGTAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCAACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGGTGTTCCTTAGGGTTCACCGAAGACCAGATTTGTTCCTACGGGATCACAGATTGCACGTGTTCAGGAACATGCCAGTTCAGGAGTACTTCTTTACAAGACTCTAATGGGAAGTTAATAGACACCTAGCGGGACTAGTAGTGGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAATATTTCAGGAAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCAGTGTCTATGTATCAGTGTTTCAGCATTCTGTTTTTAGTGAAAATTTAGTTTCTCTCCTTTAAAAAAAATAGTGTCTCTTGTTTGTTTTTTTTAGTAATGACCTCAACTTAGTATAAAGAGTTGGGTCGTTACAATAATTTTATATTCAACTCATCAACAAGTGTATAATTGAGTTCTAAACCTTTGGATTTTGTAGATTTTTTATCTTTGTGTTGTATATGCTCAGTCATTATTCACTGGTGGTTCTACTTAGCAGTGCATTTTTCGCTTGTTTTTGTATTTTTGTGAGGTTGCATTAGGTAGTTAACACACATCGATTTCTTCATAAATTTGTTAATTGTTTGTCTACCGATTCAATTAGATGTCTTGATTTAGTATCGCAAGGAATAAGAGTATTGGTTATTATGAACACATTGGTATTCATACTTAAAGAACTACTTGCAGCCTGCATTGTTGTTTGTTTGTATCGTTATAGACATTGATGTTAGTTTTGTCAATATGCAATATATAAGTGTTTTATGGGTTATGAGGCTAGTTAAAGGGGACTAATAATGTGTATGTTGAAGAGATAGTGCCAATGTTTTTGTATATATTCTTGCACACCATGTGAAATATCGAGTAATTGGTTGTGGTTTTAAACGATTTAATTGAACTGTTAGTAAAAGTTATTGACATTCATATCTAATGCCAATATTTTATTTTTTGGAAGACCTTGGTGGCAATACAAGCATGTTCAACATATTCATATTAAATAACTATTAATGCTTTTATTGTGTATTTGTTGCAACTCTCTATTGATTGTTTTTATTGTTTGATGAATGTTGTTTTTCTGATAATAAGTATTATTGGGAATTTGAAAGGGTTCGTGATTATCATACTGGTTGTGCTAAAATGGCTTGTTGATTTTTGGTTTAAGTTATATGTAGGTGGATTTTGTATAGAAATGATTTGTAGAGGGAATTTTTACCAAACACATTAGATTTTTTTTTTGTTTCTGCACCCTGCAGCCTGAAGTAATTTTTAAGACTTACGAATCCCATTTTTGTGTTCTTCTCGTCTTTCCTTAGGTGAAACAGATGGAATACATTTCTTTGTATTTTTAGATTCGACATCAAACTTATGAATCCCATTTTTATGTTCTTTGTATTTGAACCTGTCATTGTTTAGTAAAGATAACGATTTTGTGCAAATGTTACTGAATTTTAGTAGTTGGCTCCAAAGTTGATGCAATTTGTATGAACTGTTGATCTAAATTAATAGTTTTATGGAGTGAGGATGACTATTCTGGTTTTCATAAATTGTAATCAAATGTAGGTAGTTGCTTTTGACCTTTATATAAAGTTTCATTAAATTTCAAAAATGTCACTCCTTTCAGAGAAGTTAAAGTTCGTCCAATGACTTATTATTATTTAAGCCACCTCCCACAATTTTGTACATCTGTTTTGTATGATACATATAGGAAATGCGATGGACTATGATACCTTAGATCGAGGAAACTTTAACTAATATTAAGTGGTCTTTCAATAAAAATGAAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGGTATGAATATTAAAAAATTAACTTGTGTGTTTTTGTGGTTGTTTAATGTTTATATGTGTAGATTACCTAAAGATGGATTACATTAACTTGCAACTTTTCAGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTATTTATTGTTTATAACAAATCAATATTATCAATAACACACCCCTCTTATAAATACTAAAGCTCTATCCTTCGACGTGTATATATTTATGAAGTTCGATCATATTATACTTTAGTATTGTGCCGTTCACATTTATATTTTATGCAAGTAAACTTCTGATATCTTCTATAGCATAAGAAGTTTCATTCATTCTGATTTTAATATTAGGTTAACCTTTATTCTCTACGCCTTTAATAGCCTATCAATTTATAATATATTTCTGTTTTCTTCTTCAAATATTGGCCTAGATTACTGGTGGGATGATTTGCTGAGAATTGTTAGAATTTAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGGTGTGAACCTATACTTAATAACATTTTACTATTATTTCACAAAATTTTCAATTCAACTCTTTCTTTCTATCAATGTGCTTTCCATTACTATCTATGTTCGTTTCATATATATATATTTGCTGCATGATACCAAATTTAGCCTTTTCTGCTACTGGTATCTCTGTTCTTTTTGTTATAATTGAACCGAGATTTGCATTATGTTTTTAGGAGGTTTTGAATGTTTTTTAAATTGGTATGTTTTTCTATTTATCTTTCTGTTGATTACTAATGTACTTGACAGAAGTCATCTTACCAAAACCACATCAGACAATTTGAGAGTTTCACTTTTGTGAAAGTTTGAAACACTTAATTTGCTTTGCTTCTGTATGAACCTATCTATCAATCATTTCATCCGGTTGAATTGCTTTTATCTGTTACGGTTTAAATTTGTTCTTCACATTTTATAAATCCAAGTTCTAAATGGAAGAATATAACTTATTCTTAGGTTTAATTTTACTTTATCTTGTTTAATGTAGATAGATATCCGAGCTGATCTCATTGATGCATATATGTATGTGTTGAAAAGGACCCCCAATTTAATTGTCCTTCTAATTTACTACATCAAACATTTTACCCAAAAAAAAAGAAGAAAAAGAAAAAGAAACAGCTTATATTCTCATACATGTTCCTTTGTATTCTCTCCTAGATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTGAGTTCTTAATGTCTAGCATATTCTATTGTATCAATAGCAAGTGCATTTAAATGTTGTGTTTATAATCCCCCTAGTAGCAACTATTGTGCTCGCTTATTTTCAATTCAATCATACAGCGACATAAATCAAGATGTAAGTTTATTATATTGATTAAAATTCTCTTAACCACTACTTGTGTTGTGTTAGTTCTCTTGACTTGATTATATTTCTTTGACTGAAGTTTGATTTAATTTTGTAAGGTTATTGGAGAGGCAAGTCATCTTTCAGGTTACTCTTTCTCTGCTCAAAATAACATCATTTATCGTTCTGCACAACTGGCTAATATTTATTCTGAGCTAAATCATCATTTTCTTTTCTTACTAGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

mRNA sequence

ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCAACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGATAGATATCCGAGCTGATCTCATTGATGCATATATATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

Coding sequence (CDS)

ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCAACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGATAGATATCCGAGCTGATCTCATTGATGCATATATATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

Protein sequence

MLKLESKVKRKRIKLIGKFLLSAMEYFVWLKSPVRWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVPSSIAMISDREWLRIHLGRTNTQYILFSLLKSICKKHGVKVYACVGRQRIRGSFSIQIDIRADLIDAYISAVQEVLYQNDTFHSLRQDVLSYLVRSPLVLQESIGAVKSYLRQLIDL
Homology
BLAST of MELO3C035393.jh1 vs. NCBI nr
Match: TYK06480.1 (hypothetical protein E5676_scaffold70G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 4.78e-19
Identity = 54/85 (63.53%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 12 RIKLIGKFLLSAMEYFVWLKS------------------PVRWDHQSGIDIDIYIIRVIQ 71
          RIKLIG+FLLSA EY VWLKS                   VR D QS IDID+  IRVI+
Sbjct: 3  RIKLIGEFLLSAREYLVWLKSLESYLHECPSGSPPFKDCVVRRDCQSDIDIDM--IRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 78
          RDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 63 RDHSQPDCLSVSFGYTKDQIVLGVP 85

BLAST of MELO3C035393.jh1 vs. NCBI nr
Match: TYK27687.1 (hypothetical protein E5676_scaffold225G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 3.13e-18
Identity = 52/85 (61.18%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 12 RIKLIGKFLLSAMEYFVWLKSP------------------VRWDHQSGIDIDIYIIRVIQ 71
          RIKLIG+FLLS  EY VWLKSP                  VR D QSGIDIDI  IRVI+
Sbjct: 3  RIKLIGEFLLSTREYLVWLKSPESYLHGCPSGSPHFYDCVVRRDRQSGIDIDI--IRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 78
          RD SQPDCLSVS  YT DQ VL VP
Sbjct: 63 RDRSQPDCLSVSSGYTTDQFVLGVP 85

BLAST of MELO3C035393.jh1 vs. NCBI nr
Match: KAA0066563.1 (hypothetical protein E6C27_scaffold25G001330 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.71e-17
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 24 MEYFVWLKSPVRWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
          MEYFVWLKS VR D QSGIDID+  IRVI RD SQPDCLSVSF YT DQ VL VP
Sbjct: 1  MEYFVWLKSQVRRDRQSGIDIDV--IRVIPRDRSQPDCLSVSFEYTTDQFVLGVP 53

BLAST of MELO3C035393.jh1 vs. NCBI nr
Match: KAA0035224.1 (hypothetical protein E6C27_scaffold346G00560 [Cucumis melo var. makuwa] >TYK21838.1 hypothetical protein E5676_scaffold991G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.45e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 34 VRWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
          VR DHQSGIDIDI +IRVI++DHS PDCLSVSF YTK+QIVL +P
Sbjct: 5  VRRDHQSGIDIDIDMIRVIRQDHSHPDCLSVSFGYTKNQIVLVIP 49

BLAST of MELO3C035393.jh1 vs. NCBI nr
Match: KAA0047802.1 (uncharacterized protein E6C27_scaffold133G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 9.52e-13
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 35  RWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
           R DHQSGIDIDI IIRVI+RDHSQPDCLSVSF+YTKDQ VL  P
Sbjct: 347 RRDHQSGIDIDIDIIRVIRRDHSQPDCLSVSFVYTKDQFVLGAP 390

BLAST of MELO3C035393.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C571 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00040 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.32e-19
Identity = 54/85 (63.53%), Postives = 57/85 (67.06%), Query Frame = 0

Query: 12 RIKLIGKFLLSAMEYFVWLKS------------------PVRWDHQSGIDIDIYIIRVIQ 71
          RIKLIG+FLLSA EY VWLKS                   VR D QS IDID+  IRVI+
Sbjct: 3  RIKLIGEFLLSAREYLVWLKSLESYLHECPSGSPPFKDCVVRRDCQSDIDIDM--IRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 78
          RDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 63 RDHSQPDCLSVSFGYTKDQIVLGVP 85

BLAST of MELO3C035393.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00160 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.51e-18
Identity = 52/85 (61.18%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 12 RIKLIGKFLLSAMEYFVWLKSP------------------VRWDHQSGIDIDIYIIRVIQ 71
          RIKLIG+FLLS  EY VWLKSP                  VR D QSGIDIDI  IRVI+
Sbjct: 3  RIKLIGEFLLSTREYLVWLKSPESYLHGCPSGSPHFYDCVVRRDRQSGIDIDI--IRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 78
          RD SQPDCLSVS  YT DQ VL VP
Sbjct: 63 RDRSQPDCLSVSSGYTTDQFVLGVP 85

BLAST of MELO3C035393.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VEV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001330 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.29e-18
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 24 MEYFVWLKSPVRWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
          MEYFVWLKS VR D QSGIDID+  IRVI RD SQPDCLSVSF YT DQ VL VP
Sbjct: 1  MEYFVWLKSQVRRDRQSGIDIDV--IRVIPRDRSQPDCLSVSFEYTTDQFVLGVP 53

BLAST of MELO3C035393.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DEG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00650 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.15e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 34 VRWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
          VR DHQSGIDIDI +IRVI++DHS PDCLSVSF YTK+QIVL +P
Sbjct: 5  VRRDHQSGIDIDIDMIRVIRQDHSHPDCLSVSFGYTKNQIVLVIP 49

BLAST of MELO3C035393.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TWC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00460 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.61e-13
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 0

Query: 35  RWDHQSGIDIDIYIIRVIQRDHSQPDCLSVSFMYTKDQIVLDVP 78
           R DHQSGIDIDI IIRVI+RDHSQPDCLSVSF+YTKDQ VL  P
Sbjct: 347 RRDHQSGIDIDIDIIRVIRRDHSQPDCLSVSFVYTKDQFVLGAP 390

BLAST of MELO3C035393.jh1 vs. TAIR 10
Match: AT5G19485.1 (transferases;nucleotidyltransferases )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 134 QIDIRADLIDAYISA-----VQEVLYQNDTFHSLRQDVLSYLVRSPL 176
           +++IR+DL+D++I A     +QEVL Q   F SL+QDVL YLVR+ L
Sbjct: 200 KMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPYLVRTQL 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK06480.14.78e-1963.53hypothetical protein E5676_scaffold70G00040 [Cucumis melo var. makuwa][more]
TYK27687.13.13e-1861.18hypothetical protein E5676_scaffold225G00160 [Cucumis melo var. makuwa][more]
KAA0066563.11.71e-1778.18hypothetical protein E6C27_scaffold25G001330 [Cucumis melo var. makuwa][more]
KAA0035224.14.45e-1377.78hypothetical protein E6C27_scaffold346G00560 [Cucumis melo var. makuwa] >TYK2183... [more]
KAA0047802.19.52e-1384.09uncharacterized protein E6C27_scaffold133G00460 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C5712.32e-1963.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DV761.51e-1861.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEV48.29e-1878.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DEG52.15e-1377.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TWC94.61e-1384.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G19485.11.7e-0451.06transferases;nucleotidyltransferases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035393.jh1.t1MELO3C035393.jh1.t1mRNA