MELO3C035393 (gene) Melon (DHL92) v4

Overview
NameMELO3C035393
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionF-box protein
Locationchr12: 3211651 .. 3216228 (-)
RNA-Seq ExpressionMELO3C035393
SyntenyMELO3C035393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGTTATTTATCTTCTTCTCTAAGATAACCCTCTGCTGTCACCGCCTCACCAGTTTTAGTTAAGATTGGTCTCTTTGGCAAAGCTTGAAGATTTAAAGTCATGAATTTTTCCATCAAGGATAAGAGGATTTTTCAATCTCCATTTGAGTAACCTTGGTAAGCTAATGAAATTAAATTAATATTTTGTTAATTTAATTTTGAATCTATTTGGAGTTTCTTTAAAGGTTCTATTGGCTAATTGTTGAAGAATTAATCTTGGGTTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCAAATTTTTAGAAAGTTAATTAATTTGGGAGAATTTTTGGATGTTAGCCAATTGCTAATTTTATTAATTAAGATACTAAGTTTTTCTTTTATGATTAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTACTACTGGACCTTCGAACTGAATTTAAGAAACTGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGGATAATTTGATGTTATTGATAATGACTGTCATTGTATTGATGATTGATGATGATGACTGATATTATGTTGATGACTGTTGATGTTCATGTTGATGCATGATATATTAATCACATGATTAAGGACATTAAGATTAATACTCATGCCATGTTTATGATGTTATATTATGCTACATGCTATGGATAAGGTGTTTTGTTAACTATGTCTATTAGAGTCGTACCCGCATGGGTGTCCTTCGGGATCACCACCTTTTTAAGACTGCGTAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCGACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGGTGTTCCTTAGGGTTCACCGAAGACCAGATTTGTTCCTACGGGATCACAGATTGCACGTGTTCAGGAACGTGCCAGTTCAGGAGTACTTCTTTACAAGACTCTAATGGGAAGTTAATAGACACCTAGCGGGACTAGTAGTGGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAATATTTCAGGAAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGAATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCAGTGTCTATGTATCAGTGTTTCAGCATTCTGTTTTTAGTGAAAATTTAGTTTCTCTCCTTTAAAAAAAATAGTGTCTCTTGTTTGTTTTTTTTAGTAATGACCTCAACTTAGTATAAAGAGTTGGGTCGTTACAATAATTTTATATTCAACTCATCAACAAGTGTATAATTGAGTTCTAAATCTTTGGATTTTGTAGATTTTTTATCTTTGTGTTGTATATGCTCAGTCATTATTCACTGGTGGTTCTACTTAGCAGTGCATTTTTCGCTTGTTTTTGTATTTTTGTGAGGTTGCATTAGGTAGTTAACACACATCGATTTCTTCATAAATTTGTTAATTGTTTGTCTACCGATTCAATTAGATGTCTTGATTTAGTATCGCAAGGAATAAGAGTATTGGTTATTATGAACACATTGGTATTCATACTTAAAGAACTACTTGCAGCCTGCATTGTTGTTTGTTTGTATCGTTATAGACATTGATGTTAGTTTTGTCAATATGCAATATATAAGTGTTTTATGGGTTATGAGGCTAGTTAAAGGGGACTAATAATGTGTATGTTGAAGAGATAGTGCCAATGTTTTTGTATATATTCTTGCACACCATGTGAAATATCGAGTAATTGGTTGTGGTTTTAAACGATTTAATTGAACTGTTAGTAAAAGTTATTGACATTCATATCTAATGCCAATATTTTATTTTTTGGAAGACCTTGGTGGCAATACAAGCATGTTCAACATATTCATATTAAATAACTATTAATGCTTTTATTGTGTATTTGTTGCAACTCTCTATTGATTGTTTTTATTGTTTGATGAATGTTGTTTTTCTGATAATAAGTATTATTGGGAATTTGAAAGGGTTCGTGATTATCATACTGGTTGTGCTAAAATGGCTTGTTGATTTTTGGTTTAAGTTATATGTAGGTGGATTTTGTATAGAAATGATTTGTAGAGGGAATTTTTACCAAACACATTAGATTTTTTTTTGTTTCTGCACCCTGCAGCCTGAAGTAATTTTTAAGACTTACGAATCCCATTTTTGTGTTCTTCTCGTCTTTCCTTAGGTGAAACAGATGGAATACATTTCTTTGTATTTTTAGATTCGACATCAAACTTATGAATCCCATTTTTATGTTCTTTGTATTTGAACCTGTCATTGTTTAGTAAAGATAACGATTTTGTGCAAATGTTACTGAATTTTAGTAGTTGGCTCCAAAGTTGATGCAATTTGTATGAACTGTTGATCTAAATTAATAGTTTTATGGAGTGAGGATGACTATTCTGGTTTTCATAAATTGTAATCAAATGTAGGTAGTTGCTTTTGACCTTTATATAAAGTTTCATTAAATTTCAAAAATGTCACTCCTTTCAGAGAAGTTAAAGTTCGTCCAATGACTTATTATTATTTAAGCCACCTCCCACAATTTTGTACATCTGTTTTGTATGATACATATAGGAAATGCGATGGACTATGATACCTTAGATCGAGGAAACTTTAACTAATATTAAGTGGTCTTTCAATAAAAATGAAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGGTATGAATATTAAAAAATTAACTTGTGTGTTTTTGTGGTTGTTTAATGTTTATATGTGTAGATTACCTAAAGATGGATTACATTAACTTGCAACTTTTCAGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTATTTATTGTTTATAACAAATCAATATTATCAATAACACACCCCTCTTATAAATACTAAAGCTCTATCCTTCGACGTGTATATATTTATGAAGTTCGATCATATTATACTTTAGTATTGTGCCGTTCACATTTATATTTTATGCAAGTAAACTTCTGATATCTTCTATAGCATAAGAAGTTTCATTCATTCTGATTTTAATATTAGGTTAACCTTTATTCTCTACGCCTTTAATAGCCTATCAATTTATAATATATTTCTGTTTTCTTCTTCAAATATTGGCCTAGATTACTGGTGGGATGATTTGCTGAGAATTGTTAGAATTTAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGGTGTGAACCTATACTTAATAACATTTTACTATTATTTCACAAAATTTTCAATTCAACTCTTTCTTTCTATCAATGTGCTTTCCATTACTATCTATGTTCGTTTCATATATATATATTTGCTGCATGATACCAAATTTAGCCTTTTCTGCTACTGGTATCTCTGTTCTTTTTGTTATAATTGAACCGAGATTTGCATTATGTTTTTAGGAGGTTTTGAATGTTTTTTAAATTGGTATGTTTTTCTATTTATCTTTCTGTTGATTACTAATGTACTTGACAGAAGTCATCTTACCAAAACCACATCAGACAATTTGAGAGTTTCACTTTTGTGAAAGTTTGAAACACTTAATTTGCTTTGCTTCTGTATGAACCTATCTATCAATCATTTCATCCGGTTGAATTGCTTTTATCTGTTACGGTTTAAATTTGTTCTTCACATTTTATAAATCCAAGTTCTAAATGGAAGAATATAACTTATTCTTAGGTTTAATTTTACTTTATCTTGTTTAATGTAGATAGATATCCGAGCTGATCTCATTGATGCATATATGTATGTGTTGAAAAGGACCCCCAATTTAATTGTCCTTCTAATTTACTACATCAAACATTTTACCCAAAAAAAAAAGAAGAAAAAGAAAAAGAAACAGCTTATATTCTCATACATGTTCCTTTGTATTCTCTCCTAGATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTGAGTTCTTAATGTCTAGCATACTCTATTGTATCAATAGCAAGTGCATTTAAATGTTGTGTTTATAATCCCCCTAGTAGCAACTATTGTGCTCGCTTATTTTCAATTCAATCATACAGCGACATAAATCAAGATGTAAGTTTATTATATTGATTAAAATTCTCTTAACCACTACTTGTGTTGTGTTAGTTCTCTTGACTTGATTATATTTCTTTGACTGAAGTTTGATTTAATTTTGTAAGGTTATTGGAGAGGCAAGTCATCTTTCAGGTTACTCTTTCTCTGCTCAAAATAACATCATTTATCGTTCTGCACAACTGACTAATATTTATTCTGAGCTAAATCATCATTTTCTTTTCTTACTAGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

mRNA sequence

ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCGACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGATAGATATCCGAGCTGATCTCATTGATGCATATATATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

Coding sequence (CDS)

ATGCTTAAGTTAGAAAGTAAAGTAAAAAGAAAAAGGATCAAGTTAATTGGAAAATTTTTACTGTCCGCTATGGAGTACTTTGTTTGGCTAAAATCTCCAGTCCGATGGGACCACCAGTCTGGCATTGACATTGATATATACATAATTCGAGTGATTCGACGGGATCACTCGCAGCCCGATTGTCTTAGTGTTTCCTTCATGTACACTAAAGACCAGATTGTCCTAGATGTTCCTTCGTCCATTGCAATGATATCCGACAGAGAATGGCTGAGGATCCACCTAGGGCGGACAAACACTCAATATATACTCTTCTCCTTGCTGAAAAGTATTTGTAAAAAGCATGGAGTTAAGGTTTATGCTTGTGTAGGTCGACAAAGAATTCGTGGAAGTTTTAGCATTCAGATAGATATCCGAGCTGATCTCATTGATGCATATATATCTGCTGTGCAAGAGGTTCTTTATCAAAATGATACTTTCCATAGCCTTAGGCAAGATGTGTTGTCCTATCTTGTGCGGAGCCCGTTGGTTTTGCAAGAATCCATTGGAGCAGTAAAGTCATATTTGCGGCAATTGATTGATTTATAA

Protein sequence

MLKLESKVKRKRIKLIGKFLLSAMEYFVWLKSPVRWDHQSGIDIDIYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVPSSIAMISDREWLRIHLGRTNTQYILFSLLKSICKKHGVKVYACVGRQRIRGSFSIQIDIRADLIDAYISAVQEVLYQNDTFHSLRQDVLSYLVRSPLVLQESIGAVKSYLRQLIDL
Homology
[Close]
BLAST of MELO3C035393 vs. NCBI nr
Match: TYK06480.1 (hypothetical protein E5676_scaffold70G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-15
Identity = 55/85 (64.71%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 12 RIKLIGKFLLSAMEYFVWLKS------------------PVRWDHQSGIDIDIYIIRVIR 71
          RIKLIG+FLLSA EY VWLKS                   VR D QS IDID  +IRVIR
Sbjct: 3  RIKLIGEFLLSAREYLVWLKSLESYLHECPSGSPPFKDCVVRRDCQSDIDID--MIRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 79
          RDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 63 RDHSQPDCLSVSFGYTKDQIVLGVP 85

[Close]
BLAST of MELO3C035393 vs. NCBI nr
Match: TYK27687.1 (hypothetical protein E5676_scaffold225G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-14
Identity = 53/85 (62.35%), Postives = 54/85 (63.53%), Query Frame = 0 

Query: 12 RIKLIGKFLLSAMEYFVWLKSP------------------VRWDHQSGIDIDIYIIRVIR 71
          RIKLIG+FLLS  EY VWLKSP                  VR D QSGIDID  IIRVIR
Sbjct: 3  RIKLIGEFLLSTREYLVWLKSPESYLHGCPSGSPHFYDCVVRRDRQSGIDID--IIRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 79
          RD SQPDCLSVS  YT DQ VL VP
Sbjct: 63 RDRSQPDCLSVSSGYTTDQFVLGVP 85

[Close]
BLAST of MELO3C035393 vs. NCBI nr
Match: KAA0066563.1 (hypothetical protein E6C27_scaffold25G001330 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-12
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 24 MEYFVWLKSPVRWDHQSGIDIDIYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
          MEYFVWLKS VR D QSGIDID  +IRVI RD SQPDCLSVSF YT DQ VL VP
Sbjct: 1  MEYFVWLKSQVRRDRQSGIDID--VIRVIPRDRSQPDCLSVSFEYTTDQFVLGVP 53

[Close]
BLAST of MELO3C035393 vs. NCBI nr
Match: KAA0047802.1 (uncharacterized protein E6C27_scaffold133G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 35  RWDHQSGIDIDIYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
           R DHQSGIDIDI IIRVIRRDHSQPDCLSVSF+YTKDQ VL  P
Sbjct: 347 RRDHQSGIDIDIDIIRVIRRDHSQPDCLSVSFVYTKDQFVLGAP 390

[Close]
BLAST of MELO3C035393 vs. NCBI nr
Match: TYK18658.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 28  VWLKSPVRWDHQSGIDID-IYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
           V L   VR D QSGIDID I +IRVIRRDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 88  VLLDCVVRRDRQSGIDIDMIRVIRVIRRDHSQPDCLSVSFGYTKDQIVLGVP 139

[Close]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match: A0A5D3C571 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00040 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 55/85 (64.71%), Postives = 57/85 (67.06%), Query Frame = 0 

Query: 12 RIKLIGKFLLSAMEYFVWLKS------------------PVRWDHQSGIDIDIYIIRVIR 71
          RIKLIG+FLLSA EY VWLKS                   VR D QS IDID  +IRVIR
Sbjct: 3  RIKLIGEFLLSAREYLVWLKSLESYLHECPSGSPPFKDCVVRRDCQSDIDID--MIRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 79
          RDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 63 RDHSQPDCLSVSFGYTKDQIVLGVP 85

[Close]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match: A0A5D3DV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00160 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-14
Identity = 53/85 (62.35%), Postives = 54/85 (63.53%), Query Frame = 0 

Query: 12 RIKLIGKFLLSAMEYFVWLKSP------------------VRWDHQSGIDIDIYIIRVIR 71
          RIKLIG+FLLS  EY VWLKSP                  VR D QSGIDID  IIRVIR
Sbjct: 3  RIKLIGEFLLSTREYLVWLKSPESYLHGCPSGSPHFYDCVVRRDRQSGIDID--IIRVIR 62

Query: 72 RDHSQPDCLSVSFMYTKDQIVLDVP 79
          RD SQPDCLSVS  YT DQ VL VP
Sbjct: 63 RDRSQPDCLSVSSGYTTDQFVLGVP 85

[Close]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match: A0A5A7VEV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001330 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-13
Identity = 43/55 (78.18%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 24 MEYFVWLKSPVRWDHQSGIDIDIYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
          MEYFVWLKS VR D QSGIDID  +IRVI RD SQPDCLSVSF YT DQ VL VP
Sbjct: 1  MEYFVWLKSQVRRDRQSGIDID--VIRVIPRDRSQPDCLSVSFEYTTDQFVLGVP 53

[Close]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match: A0A5A7TWC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00460 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 35  RWDHQSGIDIDIYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
           R DHQSGIDIDI IIRVIRRDHSQPDCLSVSF+YTKDQ VL  P
Sbjct: 347 RRDHQSGIDIDIDIIRVIRRDHSQPDCLSVSFVYTKDQFVLGAP 390

[Close]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match: A0A5D3D540 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00240 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 41/52 (78.85%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 28  VWLKSPVRWDHQSGIDID-IYIIRVIRRDHSQPDCLSVSFMYTKDQIVLDVP 79
           V L   VR D QSGIDID I +IRVIRRDHSQPDCLSVSF YTKDQIVL VP
Sbjct: 88  VLLDCVVRRDRQSGIDIDMIRVIRVIRRDHSQPDCLSVSFGYTKDQIVLGVP 139

[Close]
BLAST of MELO3C035393 vs. TAIR 10
Match: AT5G19485.1 (transferases;nucleotidyltransferases )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 134 QIDIRADLIDAYISA-----VQEVLYQNDTFHSLRQDVLSYLVRSPL 176
           +++IR+DL+D++I A     +QEVL Q   F SL+QDVL YLVR+ L
Sbjct: 200 KMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPYLVRTQL 246

The following BLAST results are available for this feature:
BLAST of MELO3C035393 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035393 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK06480.17.7e-1564.71hypothetical protein E5676_scaffold70G00040 [Cucumis melo var. makuwa][more]
TYK27687.16.5e-1462.35hypothetical protein E5676_scaffold225G00160 [Cucumis melo var. makuwa][more]
KAA0066563.11.2e-1278.18hypothetical protein E6C27_scaffold25G001330 [Cucumis melo var. makuwa][more]
KAA0047802.13.0e-1186.36uncharacterized protein E6C27_scaffold133G00460 [Cucumis melo var. makuwa][more]
TYK18658.13.3e-1078.85F-box protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C035393 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5713.7e-1564.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DV763.2e-1462.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEV45.9e-1378.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TWC91.5e-1186.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D5401.6e-1078.85F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00240 ... [more]
BLAST of MELO3C035393 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G19485.11.7e-0451.06transferases;nucleotidyltransferases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035393.1MELO3C035393.1mRNA