MELO3C035337 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035337
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Location	chr04: 13878832 .. 13879978 (-)
RNA-Seq Expression	MELO3C035337
Synteny	MELO3C035337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTAAAGTTTTCATTATTTTTTCTCTCATTATAGTTAAATCAAATGGATTCAACGGATATGGAGTTAGAGTGTGATGGAAGCTGTAAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGTCAAGCGTAAAACCATTGATGTTGATTCATATGGAAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGATTTGGGACCTCTTTGAGAGACTTAAAGGTGATCCTAATGACCCTTGTGCTAAATGTAAATATTTTGGAGTTGTTTATGCATGTCATTCTAAACATAATGGTATTGGGACTATGAAGCATCATTTAGAAAATTGCAAAAAGTACCCTTACCAAAAAAAGAGAGACCAAACCCAAATGACATTAGCTTTTAAACCTAAAGATAAAGTTGGGGATAATTGTTCACAACTTGTATGTGAGTCATTTAGTTTAGAGGGTTGTCGGGAAGCTTTGGTTGAGATGATAATAGTTGATGAATTGCCCATTAAGTTTGTGGACGGTAAGGGATTTAAGAAGTTTGTGGATAAATTAACATGTGGAAATCATACTAGATTTGTTGTTCCATCTCGATTTACTGTGGCTAGAGATGTGCTTAAGTTTTATGTTAATGAGAAGAATCGTTTGAGAGACATGTTTGTAAAAAATAAGTATAGAGTTTCTCTCACCACTGATTGTTGGACATCGAGACAAAATATTAATTACATGGTCCTAACTGCCCATTTCATTGATTCTGATTGTAAATTACATAAGAGAATACTTAGTTTTTGTCCAATTGAGAATCATAAAGGTGATACTATTGGTAAAACCATTGAAAAGAATTTGAAGGATTGAGGTATTGAGAGGGTAATGATTTTGACGGTTGATAATACAAGTTCGAATGACACTGCTGTTGCTTATCTTTTAAAGAGATTCAATAAAGGATTATTGTTTGGTGGAAAATTTTTGCATGTTCGTTGTTGTGCCCATATATTGAATCTTATAGTAACTGATGCTTTTAAGGAACATAATGATTGTATTGATAAGATTCGATATGCCGTGCGATTTATAAGGTCTTCTCCTGCTTGTTTTTTGAAATTTAAAAAGTGCATTGAACTTGAAAATTGCTTGTAAGAGTTA

mRNA sequence

AAATTTAAAGTTTTCATTATTTTTTCTCTCATTATAGTTAAATCAAATGGATTCAACGGATATGGAGTTAGAGTGTGATGGAAGCTGTAAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGTCAAGCGTAAAACCATTGATGTTGATTCATATGGAAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGATTTGGGACCTCTTTGAGAGACTTAAAGAGGGTTGTCGGGAAGCTTTGGTTGAGATGATAATAGTTGATGAATTGCCCATTAAGTTTGTGGACGGTAAGGGATTTAAGAAGTTTGTGGATAAATTAACATGTGGAAATCATACTAGATTTGTTGTTCCATCTCGATTTACTGTGGCTAGAGATGTGCTTAAGTTTTATGTTAATGAGAAGAATCGTTTGAGAGACATGTTTAGAATACTTAGTTTTTGTCCAATTGAGAATCATAAAGGTGATACTATTGGTAAAACCATTGAAAAGAATTTGAAGGATTGAGGTATTGAGAGGGTAATGATTTTGACGGTTGATAATACAAGTTCGAATGACACTGCTGTTGCTTATCTTTTAAAGAGATTCAATAAAGGATTATTGTTTGGTGGAAAATTTTTGCATGTTCGTTGTTGTGCCCATATATTGAATCTTATAGTAACTGATGCTTTTAAGGAACATAATGATTGTATTGATAAGATTCGATATGCCGTGCGATTTATAAGGTCTTCTCCTGCTTGTTTTTTGAAATTTAAAAAGTGCATTGAACTTGAAAATTGCTTGTAAGAGTTA

Coding sequence (CDS)

ATGGATTCAACGGATATGGAGTTAGAGTGTGATGGAAGCTGTAAAACTTCAAAAATCGTAAGGGACGAAGATACGGATGTCAAGCGTAAAACCATTGATGTTGATTCATATGGAAGAGAAGATGTTCCAAATCCCTCGAAAATAAGGAAGAATGTCAAACAATCAATGATTTGGGACCTCTTTGAGAGACTTAAAGAGGGTTGTCGGGAAGCTTTGGTTGAGATGATAATAGTTGATGAATTGCCCATTAAGTTTGTGGACGGTAAGGGATTTAAGAAGTTTGTGGATAAATTAACATGTGGAAATCATACTAGATTTGTTGTTCCATCTCGATTTACTGTGGCTAGAGATGTGCTTAAGTTTTATGTTAATGAGAAGAATCGTTTGAGAGACATGTTTAGAATACTTAGTTTTTGTCCAATTGAGAATCATAAAGGTGATACTATTGGTAAAACCATTGAAAAGAATTTGAAGGATTGA

Protein sequence

MDSTDMELECDGSCKTSKIVRDEDTDVKRKTIDVDSYGREDVPNPSKIRKNVKQSMIWDLFERLKEGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHTRFVVPSRFTVARDVLKFYVNEKNRLRDMFRILSFCPIENHKGDTIGKTIEKNLKD

Homology

[Close]

BLAST of MELO3C035337 vs. NCBI nr
Match: TYK20578.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 144/208 (69.23%), Postives = 149/208 (71.63%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+ SKIVRDEDTD KRKTI  D+DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 1   MDSTDMELECDGSCEASKIVRDEDTDGKRKTIVVDLDSYGREDVPNPQKIRKNVKQSMVW 60

Query: 61  DLFERL---------KEGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHTRFVVP 120
           D FERL         K GCR+ALVEMIIVDELP KFV+GKGFKKFVDKLTCGNHTRFVV 
Sbjct: 61  DHFERLKGDPNDPRAKYGCRDALVEMIIVDELPFKFVEGKGFKKFVDKLTCGNHTRFVVS 120

Query: 121 SRFTVARDVLKFYVNEKNRLRDMF------------------------------------ 160
           SRFTVARDVLK YVNEKNRLRDM                                     
Sbjct: 121 SRFTVARDVLKLYVNEKNRLRDMLVKNKYRVSLTIDCWTLGQNTNYMFLTAHFIDSDWKL 180

[Close]

BLAST of MELO3C035337 vs. NCBI nr
Match: XP_016902694.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66
Identity = 142/216 (65.74%), Postives = 145/216 (67.13%), Query Frame = 0


Query: 6   MELECDGSCKTSKIVRDEDTDVKRKTIDVDSYGREDVPNPSKIRKNVKQSMIWDLFERLK 65
           MELECD SC+TSKIVRDEDTD KRKTIDVDSYGREDVPNPSKIRKNVKQSM+WD FERLK
Sbjct: 1   MELECDWSCETSKIVRDEDTDAKRKTIDVDSYGREDVPNPSKIRKNVKQSMVWDHFERLK 60

Query: 66  ------------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCG 125
                                   EGCREALVEMIIVDELP KFVDGKGFKKFVDKLTCG
Sbjct: 61  GDPNDPRAKCKYCGVVYAFHSKRNEGCREALVEMIIVDELPFKFVDGKGFKKFVDKLTCG 120

Query: 126 NHTRFVVPSRFTVARDVLKFYVNEKNRLRDMF---------------------------- 160
           NHTRF VPS FTVARDVLK YVNEKNRLRDMF                            
Sbjct: 121 NHTRFFVPSGFTVARDVLKLYVNEKNRLRDMFVKNKYRVSLTTDYWTSRQNISYMVLTAH 180

[Close]

BLAST of MELO3C035337 vs. NCBI nr
Match: KAA0038019.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 143/208 (68.75%), Postives = 148/208 (71.15%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+ SKIVRDEDTD KRKTI  D+DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 52  MDSTDMELECDGSCEASKIVRDEDTDGKRKTIVVDLDSYGREDVPNPQKIRKNVKQSMVW 111

Query: 61  DLFERL---------KEGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHTRFVVP 120
           D FERL         K GCR+ALVEMIIVDELP KFV+GKGFKKFVDKLTCGNHTRFVV 
Sbjct: 112 DHFERLKGDPNDPRAKYGCRDALVEMIIVDELPFKFVEGKGFKKFVDKLTCGNHTRFVVS 171

Query: 121 SRFTVARDVLKFYVNEKNRLRDMF------------------------------------ 160
           SRFTVARDVLK YVNEKNRLRDM                                     
Sbjct: 172 SRFTVARDVLKLYVNEKNRLRDMLVKNKYRVSLTIDCWTLGQNTNYMFLTAHFIDSDWKL 231

[Close]

BLAST of MELO3C035337 vs. NCBI nr
Match: XP_016901284.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 139/209 (66.51%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 6   MELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIWDLFER 65
           MELECDGSC+T KIVRDEDTD KRKTI  D+DSYGRE+VPN SKIRKNVKQSM+WD FER
Sbjct: 1   MELECDGSCETLKIVRDEDTDAKRKTIYVDLDSYGRENVPNLSKIRKNVKQSMVWDHFER 60

Query: 66  LK------------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLT 125
           LK                        EGCRE LVEMIIVDELP KFVDGKGFKKFVDKLT
Sbjct: 61  LKGDPNDPRAKCKYCGVVYACHSKRNEGCREPLVEMIIVDELPFKFVDGKGFKKFVDKLT 120

Query: 126 CGNHTRFVVPSRFTVARDVLKFYVNEKNRLRDMF-------------------------- 160
           C NHTRFVVPSRFTVARDVLK YVNE+NRLRDMF                          
Sbjct: 121 CRNHTRFVVPSRFTVARDVLKLYVNEENRLRDMFVKNKYRVSLTTDCWISGQNINYMVLT 180

[Close]

BLAST of MELO3C035337 vs. NCBI nr
Match: KAA0057700.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK27486.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.6e-64
Identity = 150/273 (54.95%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTIDV--DSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+TSKIVRDEDTD KRKTIDV  DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 1   MDSTDMELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYGREDVPNPPKIRKNVKQSMVW 60

Query: 61  DLFERLK----------------------------------------------------- 120
           D FERLK                                                     
Sbjct: 61  DHFERLKGDPNDPRAKCKYCGVVYACHSKHNGTGTMKHHLENCKKYPYQKKRDQTQMTLA 120

Query: 121 ---------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHT 160
                                EGCREALVEMIIVDELP KFVDGKGFKKFVDKLTC NHT
Sbjct: 121 FKPKDKVGDNSSQLVCESFSLEGCREALVEMIIVDELPFKFVDGKGFKKFVDKLTCENHT 180

[Close]

BLAST of MELO3C035337 vs. ExPASy TrEMBL
Match: A0A5D3DAN8 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001750 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 144/208 (69.23%), Postives = 149/208 (71.63%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+ SKIVRDEDTD KRKTI  D+DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 1   MDSTDMELECDGSCEASKIVRDEDTDGKRKTIVVDLDSYGREDVPNPQKIRKNVKQSMVW 60

Query: 61  DLFERL---------KEGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHTRFVVP 120
           D FERL         K GCR+ALVEMIIVDELP KFV+GKGFKKFVDKLTCGNHTRFVV 
Sbjct: 61  DHFERLKGDPNDPRAKYGCRDALVEMIIVDELPFKFVEGKGFKKFVDKLTCGNHTRFVVS 120

Query: 121 SRFTVARDVLKFYVNEKNRLRDMF------------------------------------ 160
           SRFTVARDVLK YVNEKNRLRDM                                     
Sbjct: 121 SRFTVARDVLKLYVNEKNRLRDMLVKNKYRVSLTIDCWTLGQNTNYMFLTAHFIDSDWKL 180

[Close]

BLAST of MELO3C035337 vs. ExPASy TrEMBL
Match: A0A1S4E385 (zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo OX=3656 GN=LOC107991822 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.9e-67
Identity = 142/216 (65.74%), Postives = 145/216 (67.13%), Query Frame = 0


Query: 6   MELECDGSCKTSKIVRDEDTDVKRKTIDVDSYGREDVPNPSKIRKNVKQSMIWDLFERLK 65
           MELECD SC+TSKIVRDEDTD KRKTIDVDSYGREDVPNPSKIRKNVKQSM+WD FERLK
Sbjct: 1   MELECDWSCETSKIVRDEDTDAKRKTIDVDSYGREDVPNPSKIRKNVKQSMVWDHFERLK 60

Query: 66  ------------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCG 125
                                   EGCREALVEMIIVDELP KFVDGKGFKKFVDKLTCG
Sbjct: 61  GDPNDPRAKCKYCGVVYAFHSKRNEGCREALVEMIIVDELPFKFVDGKGFKKFVDKLTCG 120

Query: 126 NHTRFVVPSRFTVARDVLKFYVNEKNRLRDMF---------------------------- 160
           NHTRF VPS FTVARDVLK YVNEKNRLRDMF                            
Sbjct: 121 NHTRFFVPSGFTVARDVLKLYVNEKNRLRDMFVKNKYRVSLTTDYWTSRQNISYMVLTAH 180

[Close]

BLAST of MELO3C035337 vs. ExPASy TrEMBL
Match: A0A5A7T9L0 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002130 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.7e-67
Identity = 143/208 (68.75%), Postives = 148/208 (71.15%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+ SKIVRDEDTD KRKTI  D+DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 52  MDSTDMELECDGSCEASKIVRDEDTDGKRKTIVVDLDSYGREDVPNPQKIRKNVKQSMVW 111

Query: 61  DLFERL---------KEGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHTRFVVP 120
           D FERL         K GCR+ALVEMIIVDELP KFV+GKGFKKFVDKLTCGNHTRFVV 
Sbjct: 112 DHFERLKGDPNDPRAKYGCRDALVEMIIVDELPFKFVEGKGFKKFVDKLTCGNHTRFVVS 171

Query: 121 SRFTVARDVLKFYVNEKNRLRDMF------------------------------------ 160
           SRFTVARDVLK YVNEKNRLRDM                                     
Sbjct: 172 SRFTVARDVLKLYVNEKNRLRDMLVKNKYRVSLTIDCWTLGQNTNYMFLTAHFIDSDWKL 231

[Close]

BLAST of MELO3C035337 vs. ExPASy TrEMBL
Match: A0A1S4DZ75 (zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo OX=3656 GN=LOC107991218 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 139/209 (66.51%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 6   MELECDGSCKTSKIVRDEDTDVKRKTI--DVDSYGREDVPNPSKIRKNVKQSMIWDLFER 65
           MELECDGSC+T KIVRDEDTD KRKTI  D+DSYGRE+VPN SKIRKNVKQSM+WD FER
Sbjct: 1   MELECDGSCETLKIVRDEDTDAKRKTIYVDLDSYGRENVPNLSKIRKNVKQSMVWDHFER 60

Query: 66  LK------------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLT 125
           LK                        EGCRE LVEMIIVDELP KFVDGKGFKKFVDKLT
Sbjct: 61  LKGDPNDPRAKCKYCGVVYACHSKRNEGCREPLVEMIIVDELPFKFVDGKGFKKFVDKLT 120

Query: 126 CGNHTRFVVPSRFTVARDVLKFYVNEKNRLRDMF-------------------------- 160
           C NHTRFVVPSRFTVARDVLK YVNE+NRLRDMF                          
Sbjct: 121 CRNHTRFVVPSRFTVARDVLKLYVNEENRLRDMFVKNKYRVSLTTDCWISGQNINYMVLT 180

[Close]

BLAST of MELO3C035337 vs. ExPASy TrEMBL
Match: A0A5A7URG0 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00400 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 150/273 (54.95%), Postives = 153/273 (56.04%), Query Frame = 0


Query: 1   MDSTDMELECDGSCKTSKIVRDEDTDVKRKTIDV--DSYGREDVPNPSKIRKNVKQSMIW 60
           MDSTDMELECDGSC+TSKIVRDEDTD KRKTIDV  DSYGREDVPNP KIRKNVKQSM+W
Sbjct: 1   MDSTDMELECDGSCETSKIVRDEDTDAKRKTIDVDLDSYGREDVPNPPKIRKNVKQSMVW 60

Query: 61  DLFERLK----------------------------------------------------- 120
           D FERLK                                                     
Sbjct: 61  DHFERLKGDPNDPRAKCKYCGVVYACHSKHNGTGTMKHHLENCKKYPYQKKRDQTQMTLA 120

Query: 121 ---------------------EGCREALVEMIIVDELPIKFVDGKGFKKFVDKLTCGNHT 160
                                EGCREALVEMIIVDELP KFVDGKGFKKFVDKLTC NHT
Sbjct: 121 FKPKDKVGDNSSQLVCESFSLEGCREALVEMIIVDELPFKFVDGKGFKKFVDKLTCENHT 180

The following BLAST results are available for this feature:

BLAST of MELO3C035337 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20578.1	3.2e-67	69.23	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
XP_016902694.1	1.2e-66	65.74	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis...	[more]
KAA0038019.1	1.6e-66	68.75	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
XP_016901284.1	4.3e-64	66.51	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis...	[more]
KAA0057700.1	5.6e-64	54.95	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]

BLAST of MELO3C035337 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAN8	1.5e-67	69.23	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A1S4E385	5.9e-67	65.74	zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo OX=...	[more]
A0A5A7T9L0	7.7e-67	68.75	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A1S4DZ75	2.1e-64	66.51	zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo OX=...	[more]
A0A5A7URG0	2.7e-64	54.95	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of MELO3C035337 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	140996	Hermes dimerisation domain	coord: 62..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035337.1	MELO3C035337.1	mRNA