MELO3C035328 (gene) Melon (DHL92) v4

Overview
NameMELO3C035328
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Locationchr12: 1590131 .. 1591610 (-)
RNA-Seq ExpressionMELO3C035328
SyntenyMELO3C035328
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGACGACCAAGGTCAGTTTGAACATTTCCTAAACGGATTAGAGTCAATGTTCGATGGGATTTTCGAAGAAATTTAATTCGTGATATTTGGTCATTTGATATTTTTCTAAAAAAAGGTAAACATTAATCTTCAAGCTTATTGATTTTTCTAGATGTTCGGCCTTCGAACTTGTTGATCTTTTTTAGAGGATTCGTTTTTGGCTTGTTGTGATTTTGTTGAACAGTTCTGATCAACATATCTGACTTGTTGATCGTCTTGGATCGACTTTACAATTTTAGAAGAGTTACATTCTTCATATCTTTAAAGCTTTGATTATATGATACTTTAGAACTTACGAGCTTTAGAGCCTCAATCTTCGATACTTGAATGAAGTTTTAATCTTTAGAACTTTCAGTCTTTAGGAAGTTGTAAGTTTAAGATCAATTTGAAGCTCCAATCTTCTGAAATTTAGAGAGGTTTTAACCTTTTAAAAGGGAATCCGTGGAAATAGCAAATATGACAATAGAAAATAAAAAAATAGCAAACCGTTATTTTTTTATTTATGGCAAAACTAGCTACCATAAATATATGAAACAATAATTTAATTTGATATAATCGTATGGAGTCTGTATAATATATGAAACAATAATTTAATTTAATATACATCACTCTTATATAGAATCTATCAGTTTTTGGACTACTCAATAAATGTGTTTCCTTTGAATTTTTTCGATGGCTTTACAACGAGTGAAGACCATATTCGAGATGGATTCAGTCCTCCCGATATATTGACTATCGCGTCCTTGATGTATATGTTTCAGTTTCATCATCGTTTCAAGAATTTGTAAACTGCATCCAACGTAGACTTTTTCCAAATTCATAACTTTCTGTCTCTAGGTTGACCGTTTACTGGACTGATTGCAACAATTCGAACCTCATTCGGATTGTTGATGATAAGCATGTGTCTTGGATTATGTTAGTCATATCGAAATTTTCCGACAATGATCTACTTGTTGTCTTTGACACTGTATCTGCTACTGATATTGGAAATACCCTGTATTTGAGAGAGAACGTGAAGTTGCTTTGAATTCCATTAAGGGTACTCCGAGGACTCGTGTGTCATGTTGTCTGCATTTTCGGATGCATTGATCTGAAACAACTCAGGTATAAAAACTACAAATACTTTGTATTTTAACAAACAACACACGATCAACCTAGAAATACATTGTAATTCTAAATTGTTTTATTTGACTGTTTTTAGGTACATATACAGTTGAAGAAGTAGATGATGAAGGTCGGTTTAATACAAACAAACGAAAGCCGGTGGAAAGCGATCTTAAGTGGAGAGCGATCTTAAAAGGACCGGGGGAAAGCAATCCTAAAAGTCACTGCAACATGAGAGAACAGAGATGACCGCGCATATCTTAAGTGACGGTGGAAAGCGTTTCAAAAAGGAATGGAGAAAGCGATCTTATTTTTCGAAGGAAAAGAGAAGG

mRNA sequence

ATGCATGACGACCAAGGTCAGTTTGAACATTTCCTAAACGGATTAGAGTCAATGTTGACCGTTTACTGGACTGATTGCAACAATTCGAACCTCATTCGGATTGTTGATGATAAGCATGTGTCTTGGATTATGTTAGTCATATCGAAATTTTCCGACAATGATCTACTTGTTGTCTTTGACACTGTATCTGCTACTGATATTGGAAATACCCTGTATTTGAGAGAGAACGTGAAGTTGCTTTGAATTCCATTAAGGGTACTCCGAGGACTCGTACATATACAGTTGAAGAAGTAGATGATGAAGGTCGGTTTAATACAAACAAACGAAAGCCGGTGGAAAGCGATCTTAAGTGGAGAGCGATCTTAAAAGGACCGGGGGAAAGCAATCCTAAAAGTCACTGCAACATGAGAGAACAGAGATGACCGCGCATATCTTAAGTGACGGTGGAAAGCGTTTCAAAAAGGAATGGAGAAAGCGATCTTATTTTTCGAAGGAAAAGAGAAGG

Coding sequence (CDS)

ATGCATGACGACCAAGGTCAGTTTGAACATTTCCTAAACGGATTAGAGTCAATGTTGACCGTTTACTGGACTGATTGCAACAATTCGAACCTCATTCGGATTGTTGATGATAAGCATGTGTCTTGGATTATGTTAGTCATATCGAAATTTTCCGACAATGATCTACTTGTTGTCTTTGACACTGTATCTGCTACTGATATTGGAAATACCCTGTATTTGAGAGAGAACGTGAAGTTGCTTTGA

Protein sequence

MHDDQGQFEHFLNGLESMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYLRENVKLL
Homology
[Close]
BLAST of MELO3C035328 vs. NCBI nr
Match: KAA0047392.1 (uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLIRIVDDK VSWIMLVISKF DNDLLVV +TV ATDIGNT YL
Sbjct: 56  SRLTVYWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPATDIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. NCBI nr
Match: TYK14069.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLIRIVDDK VSWIMLVISKF DNDLLVV +TV ATDIGNT YL
Sbjct: 56  SRLTVYWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPATDIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. NCBI nr
Match: KAA0033326.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW  CNNSNLIRIVDDK+VSW+MLV+SKFSDNDLLVV D VSA++IGNT YL
Sbjct: 56  SWLTVYWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. NCBI nr
Match: KAA0038035.1 (uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK20567.1 uncharacterized protein E5676_scaffold237G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-16
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLI+IV+DK  SWIMLVISKFSDNDLL+V DTV ATDIG+T YL
Sbjct: 56  SRLTVYWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGSTPYL 112

[Close]
BLAST of MELO3C035328 vs. NCBI nr
Match: TYK21259.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 8.3e-16
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 17 SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
          S LT+YW DCNNS  IRIVDDK+VSWIMLV+SKF DNDLL+V DTV  TDIGNT Y+
Sbjct: 38 SRLTLYWKDCNNSKFIRIVDDKNVSWIMLVLSKFPDNDLLIVVDTVPVTDIGNTPYM 94

[Close]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match: A0A5D3CUZ6 (Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00480 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-18
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLIRIVDDK VSWIMLVISKF DNDLLVV +TV ATDIGNT YL
Sbjct: 56  SRLTVYWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPATDIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match: A0A5A7TVA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00490 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-18
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLIRIVDDK VSWIMLVISKF DNDLLVV +TV ATDIGNT YL
Sbjct: 56  SRLTVYWKDCNNSNLIRIVDDKDVSWIMLVISKFPDNDLLVVVETVPATDIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match: A0A5D3DDR3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00820 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.1e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW  CNNSNLIRIVDDK+VSW+MLV+SKFSDNDLLVV D VSA++IGNT YL
Sbjct: 56  SWLTVYWNGCNNSNLIRIVDDKYVSWLMLVMSKFSDNDLLVVVDYVSASNIGNTPYL 112

[Close]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match: A0A5D3DAG3 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001590 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-16
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 17  SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
           S LTVYW DCNNSNLI+IV+DK  SWIMLVISKFSDNDLL+V DTV ATDIG+T YL
Sbjct: 56  SRLTVYWKDCNNSNLIQIVNDKDESWIMLVISKFSDNDLLIVVDTVPATDIGSTPYL 112

[Close]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match: A0A5D3DDB9 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00090 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 17 SMLTVYWTDCNNSNLIRIVDDKHVSWIMLVISKFSDNDLLVVFDTVSATDIGNTLYL 74
          S LT+YW DCNNS  IRIVDDK+VSWIMLV+SKF DNDLL+V DTV  TDIGNT Y+
Sbjct: 38 SRLTLYWKDCNNSKFIRIVDDKNVSWIMLVLSKFPDNDLLIVVDTVPVTDIGNTPYM 94

The following BLAST results are available for this feature:
BLAST of MELO3C035328 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035328 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047392.11.2e-1785.96uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa][more]
TYK14069.11.2e-1785.96protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa][more]
KAA0033326.11.7e-1680.70MuDRA-like transposase [Cucumis melo var. makuwa] >TYK21580.1 MuDRA-like transpo... [more]
KAA0038035.12.9e-1680.70uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa] >TYK2... [more]
TYK21259.18.3e-1675.44protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CUZ65.6e-1885.96Protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7TVA65.6e-1885.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DDR38.1e-1780.70MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5D3DAG31.4e-1680.70ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DDB94.0e-1675.44Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C035328 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035328.1MELO3C035328.1mRNA