MELO3C035297 (gene) Melon (DHL92) v4

Overview
NameMELO3C035297
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscription factor bHLH36-like
Locationchr08: 15788275 .. 15788512 (-)
RNA-Seq ExpressionMELO3C035297
SyntenyMELO3C035297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAAAGGGAGAGGCAAAGAAGACAAGAAATCGATGCTCTTTATATGTCTTTAAGAACCTTACTTTCTCTTGAATTTATTAAGGTAATTTGTGGGACTGTACACAGGGGAAGAGATAGACGAAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTCCTCGTTGTGGGTCTCCGTCGCCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTT

mRNA sequence

AGAGAAAGGGAGAGGCAAAGAAGACAAGAAATCGATGCTCTTTATATGTCTTTAAGAACCTTACTTTCTCTTGAATTTATTAAGGTAATTTGTGGGACTGTACACAGGGGAAGAGATAGACGAAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTCCTCGTTGTGGGTCTCCGTCGCCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTT

Coding sequence (CDS)

AGAGAAAGGGAGAGGCAAAGAAGACAAGAAATCGATGCTCTTTATATGTCTTTAAGAACCTTACTTTCTCTTGAATTTATTAAGGTAATTTGTGGGACTGTACACAGGGGAAGAGATAGACGAAGGGAGAAGAAATGA

Protein sequence

RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK
Homology
[Close]
BLAST of MELO3C035297 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYM LR LL LEFIKVICGTVHRGRD++REKK
Sbjct: 10 RERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

[Close]
BLAST of MELO3C035297 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYMSLRTLL LEFIKVI GT+HRGRD+ REKK
Sbjct: 10 RERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

[Close]
BLAST of MELO3C035297 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYM++RTLLSLEFIKVICG VHR RD+ REKK
Sbjct: 10 RERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

[Close]
BLAST of MELO3C035297 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYM LR LL LEFIKVICGTVHRGRD++REKK
Sbjct: 10 RERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKK 54

[Close]
BLAST of MELO3C035297 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYM++RTLLSLEFIKVICG VHR RD+ REKK
Sbjct: 10 RERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKK 54

[Close]
BLAST of MELO3C035297 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  RERERQRRQEIDALYMSLRTLLSLEFIKVICGTVHRGRDRRREKK 46
          RERERQRRQEI ALYMSLRTLL LEFIKVI GT+HRGRD+ REKK
Sbjct: 10 RERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKK 54

The following BLAST results are available for this feature:
BLAST of MELO3C035297 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033316.14.5e-1186.67transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
TYK30150.13.8e-1086.67transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0065871.13.8e-1084.44retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
BLAST of MELO3C035297 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7STJ52.2e-1186.67Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VJK91.9e-1084.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3K51.9e-1086.67Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of MELO3C035297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035297.1MELO3C035297.1mRNA