MELO3C035279 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035279
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr12: 1709755 .. 1709883 (-)
RNA-Seq Expression	MELO3C035279
Synteny	MELO3C035279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCCCATCTCCTCCGCCGGTACCGGAATCCACAACACGGCCACCAATTCCCCCGCCACCGATCCACCACAGTACGTTTCACCTAACGACCAGATTAACAATCGCAAGTGGGTTGACGTTGGTG

mRNA sequence

ATGTCTTCCCCATCTCCTCCGCCGGTACCGGAATCCACAACACGGCCACCAATTCCCCCGCCACCGATCCACCACAGTACGTTTCACCTAACGACCAGATTAACAATCGCAAGTGGGTTGACGTTGGTG

Coding sequence (CDS)

ATGTCTTCCCCATCTCCTCCGCCGGTACCGGAATCCACAACACGGCCACCAATTCCCCCGCCACCGATCCACCACAGTACGTTTCACCTAACGACCAGATTAACAATCGCAAGTGGGTTGACGTTGGTG

Protein sequence

MSSPSPPPVPESTTRPPIPPPPIHHSTFHLTTRLTIASGLTLV

Homology

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BLAST of MELO3C035279 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 1  MSSPSPPPVPESTTRPPIPPPPIHHSTFHLTTRLTIASGLTLV 44
          MSSPSPPPVPESTTRPPIPP PIHHS FHLTTRLTIASGL LV
Sbjct: 1  MSSPSPPPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLV 43

The following BLAST results are available for this feature:

BLAST of MELO3C035279 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742489.1	1.7e-10	93.02	RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical pr...	[more]

BLAST of MELO3C035279 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C035279 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035279.1	MELO3C035279.1	mRNA