MELO3C035270 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035270
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CACTA en-spm transposon protein
Location	chr12: 284627 .. 288638 (-)
RNA-Seq Expression	MELO3C035270
Synteny	MELO3C035270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATACTTACATTTTCTTCATATACATCACCATATTTCATATATACATTATATAATTCTTTTACATATTTGCACTGTAGGTTAATCCAGTTAATAACATGAAATACCAAGTCATAGATGGAACCTCCCAATATGTGATTTACTTACCTACGAAAATTTGTAGTTGCAGGATGTAGGATATATTGGAAATACCTTATACGCATGCATGTGTTGTTTTCACCATGAAACAATTGTCAATTAAGTCATATGTCTCACCTCTTTACTTGAACAGCACTTTGAGTTCAATATATAGAGGCCTAATAAATACCTTAGGCGATCATCGATAATGGCAAATACCTGATGAAGGGAGATCTCAATATCCTATAAGGCAAATTTCGTTGTGAAGGGAGATCTCAATATTCTAGAACGTAAATTTCCTCTCTTTATGCTCCTCCTTGCTGCTTGTTGATAAGCAATATCTCTACCTCGAGCTTGTTATTCTAGTGAATAATTAGAAATTTACATTTTCAATATTACGACATACATATAATTAGCATTTCAAATATACATACAGTAATTGTAGCACTCCTAACAACTATAGGTCTTTGAGCAGGATTTTTTCCATTTTTTTTCTTCTACATAAAGCACATTTAGCCTAATTTATAATAGTTTCAATCTACCTATAAATTCAAAAATAATAACCATATTTACTAAATTACTTACCTTCATTTTTATTACTTCCTTTTCAATTTTGTCTACTTCATTAAGTAGAGCAGTGTTATATACTACATCATCAAGCAAATCATTTTGTCATCTCTGATCATCTTCATAATTATTGTGTAATATACACAGTTATAAATTAAAATAAACAGCTATATATCTGTGTAATATACCTCTTATTCTTCATTTTCTGTTTCATTGTTTCCATCATGATCATCATTAAAGTTAGTATGCAAAATATACAGATATATATGTCTAACATACAGATCAATCCATAAATCATAATATAGAGATAAATAGAAAATCTATTTGCTAATCATTTCTTCCTTCACTTTCATTTCCAGATTTGCCATCATGTTCTCCTTCACTCCTTCCCCTTTCTTCACTATTATTTCTATCACCTTTACCTCCATCATTCTCATCATTCTCATCCCTTTGTATGGTTGTAAGCATTCTCCTAAAATCTTTCATTAATTTTCTCCCTACTTTTCGTTTCATGGAACGTGCTTCGTTCCACGAAATCATCCTCAAGAAACATAACCTTGTATTGGAACTGTTTCAAAAATGATATTCAGACATGAGTTTATACTATATGCATATACATATATAATATTAATAATAGACATAAAATATACAGTTCACATCAAACCTGTTCATGATCGAAGACCCTTTCTGCAAGTTCTTTCCTTTTTGGGTGGTTGTTAACTACCTAGTTCAACATGCATATCTTATTGTGATCAATTCTTTAGGCACAAAATATTGAAGGACCAGTCAACAGTGGGATGCATTCATATACCCATACTAAAAGAGAGTAAGCAAATCCAAAAATTCCAACAGTTAGGGCGGAAGGGTTTTCTATAGATTTTTTTTATAGAATCTATTAGCATATTATACCCTATCTTTTTCCATGGATACGCATCAAACTATTTTTCATCAATATGTTCCAAATCAATACCGATTATGAATTGTTTTCCAAAGAGGAAATTCTCTAGAAAGGATATCTTTGTCATTTTTATTTTATCTTCCTCATTTAGTTTTTTAGAGTCATTAAATAAAAATGAGACCCTTGACCTCAGTATAGGGTATTCATTCTAGAAGTACTTGGACAAAAAAAATTTCTTCACCATAGAAATATCTATTATTGGCAAGAGACCACAGTTCAGACCGGTTATTGCCTCAAATTTCCTAATGCTAAATTTGGCTATAGTTCCTTCGAAGTTAAACCACAACTCATCGTCCTTTGTCAAATGTACATTGACGTCTGATGATGTTGGCTCTAGAATTTTGAGAATTTTATGTATAGAAAACTACCAAAAGCCGTATTTCTAAAAACTTCTAATTTCCTAGTATTTAGTTTTCTTTTTATATGTCTAATAATATCTAGTCTTGCATAGATGTTTAGTTTCTGCAGTTTTGACCATTGACTCCTTTTTAGGATCAATGGTGCACCCTGCAAACATAATTTGTAGGAGAATATTATTCTATGTATACTTAATATATACAATTAAATTACATGACACTAAATATATTTCAATAACTTAATGAGTACCTCATAATCATCCTCTACCTTAACGGTTTTTTTTCCTATTTTTTCTCTTCAGTCGATTTTTGAAACAATATTAGTAATATACATTTTAAATTATAAGATCATTTCTCAGTGAAAAACAACTGCACTTTAGTGTACACAAATATTATATACATATATTTTATATACCTTTGTATTTGATTACCTTCCTCCTTTCTTCACATTTTTTATTCCTTATTTTTCCAGCTCTTGTTTCTTATCACTTTTTTTTAGCTTCTTATTATTATCCTTATTCTCTTCCCTTCCTTTGACAACTTTCTTTAACTTTCTCTTCTTAGATACCTACATTTCACATAAACAATAAAAAGGTTATATTAATGTAACGTTAGTTTCTTATAAACAAATACAACTAATGTTTACATCATTCGTACAACTAAGGTTTACACACGTAGATTTTCAGTTTCAGTGGCCTTCCTTTTTCCCTTCAACACACGTTCGAACAATCTCCTTTTGGCAATTGGTAAATTGTCCCACAGGTAATAGAATACCATTAACGTATAAGTTCAATTCATTCAGCACTACAAGAAATTGAGGTTTTCCCAACGTACAAAAAGGCGTTGAAAGAAACAACGTCAAAAAATACGTCTTATCCCGACGTCACTTTTCACACGTTGGGCAAAGCACCTTTTTTCGATGTCGTGATAGAGTCGTCGGAAAAGAAGATAACATTTCTGACATATGAGTGTAGGGCGTCGGGAATAATAACTTATCTCGATGCCTCATGCACGCGTTGGAAACAATCAGTCAGAAGTTTTCAAACATTAATTATAATCATTCTCGACGCATCTTACATGTCGTCGGGAGTAAGGGGAGCTCTTAACGCCATTTTTGGTTGGTCGAGAATGGCATCTGAAGTAATGGGAGATCCCGATGCCATTAGTGATTCGTCGAGAATGGCGTCAGGAGTAAAGGGATCTCCCGATGTTTTCGTGCTATGTCGGGAGTTCCCCTATAAAATAGATGTTTTAGTTTTGTGAAACACAGAACCGAAACGAAAAAGAAAAAGAAAGAGATATTAATTATACCGGTGAAACGAAAAGAAGAGAAACTTTCAGCCGTCTCCGTCGTGTCACTCTTGTCGTCTACCACTGCACATCCCTATTTGAGGTAAGTTTAAAATTCTAAATCCTTAAAAATGTTAGTTTATGTTAGTTTTATTTAAATAGTTTAGGTTTTTGTTTTTTAAAATTAGTTTTAGGATTTTAATGATGAATTAGTTTTAGGATATTGTTTAAGAATAGATTTCGGTTTTTGAAGTTGGAATTAGAATGTGGGTTGAAAAGGGGGAGGGGCATTTGAGAAATTGATTTGGAGAATTGAAATTTTGTTGGGGGGATGGGGGGTTGAATTGAAACTTTGAGGGATTAGGGTTGAAAATTTGAGGGGGGGGAGTGATGTCTATTATTGTCTTAAAAATTCTGTAATGTGTTAAGATTCGTTTTGGCTATCCTATAGTTATAGTAGCCTTTAGTTCAATTCTAATAGTTTATTTTTTAGTAGTTTTGAATAATTTTGTTGTTGATCTGGGATGACTATCTTGTAGTTATGTTAGCTTTTTTTGTTTTGAATTTGTTTGAATTTATGAGGGTTTGAAGAGGTGGTAGTAGGATAGCTTAATTGTAAGGTAGCGTGTTGAAGAGGTGGGTAGGATGCGAAGATTGAAGTTGTTTGTAGTTAATAATTAGGTTGTGCTGGCTATCCTGCAATTATGGTAGCCGTAATTTGA

mRNA sequence

TATATATACTTACATTTTCTTCATATACATCACCATATTTCATATATACATTATATAATTCTTTTACATATTTGCACTGTAGGTTAATCCAGTTAATAACATGAAATACCAAGTCATAGATGGAACCTCCCAATATTGGCCTTCCTTTTTCCCTTCAACACACGTTCGAACAATCTCCTTTTGGCAATTGGTAAATTGTCCCACAGCACTACAAGAAATTGAGGTTTTCCCAACGTACAAAAAGGCGTTGAAAGAAACAACGTCAAAAAATACGTCTTATCCCGACGTCACTTTTCACACGTTGGGCAAAGCACCTTTTTTCGATGTCGTGATAGAGTCGTCGGAAAAGAAGATAACATTTCTGACATATGAGTGTAGGGCGTCGGGAATAATAACTTATCTCGATGCCTCATGCACGCGTTGGAAACAATCAGTCAGAAGTTTTCAAACATTAATTATAATCATTCTCGACGCATCTTACATGTCGTCGGGAGTAAGGGGAGCTCTTAACGCCATTTTTGGTTGGTCGAGAATGGCATCTGAAGTAATGGGAGATCCCGATGCCATTAGTGATTCGTCGAGAATGGCGTCAGGAGTAAAGGGATCTCCCGATAACCGAAACGAAAAAGAAAAAGAAAGAGATATTAATTATACCGGTGAAACGAAAAGAAGAGAAACTTTCAGCCGTCTCCGTCGTGTCACTCTTGTCGTCTACCACTGCACATCCCTATTTGAGGATTTTAATGATGAATTAGTTTTAGGATATTGTTTAAGAATAGATTTCGGTTGTGCTGGCTATCCTGCAATTATGGTAGCCGTAATTTGA

Coding sequence (CDS)

ATGAAATACCAAGTCATAGATGGAACCTCCCAATATTGGCCTTCCTTTTTCCCTTCAACACACGTTCGAACAATCTCCTTTTGGCAATTGGTAAATTGTCCCACAGCACTACAAGAAATTGAGGTTTTCCCAACGTACAAAAAGGCGTTGAAAGAAACAACGTCAAAAAATACGTCTTATCCCGACGTCACTTTTCACACGTTGGGCAAAGCACCTTTTTTCGATGTCGTGATAGAGTCGTCGGAAAAGAAGATAACATTTCTGACATATGAGTGTAGGGCGTCGGGAATAATAACTTATCTCGATGCCTCATGCACGCGTTGGAAACAATCAGTCAGAAGTTTTCAAACATTAATTATAATCATTCTCGACGCATCTTACATGTCGTCGGGAGTAAGGGGAGCTCTTAACGCCATTTTTGGTTGGTCGAGAATGGCATCTGAAGTAATGGGAGATCCCGATGCCATTAGTGATTCGTCGAGAATGGCGTCAGGAGTAAAGGGATCTCCCGATAACCGAAACGAAAAAGAAAAAGAAAGAGATATTAATTATACCGGTGAAACGAAAAGAAGAGAAACTTTCAGCCGTCTCCGTCGTGTCACTCTTGTCGTCTACCACTGCACATCCCTATTTGAGGATTTTAATGATGAATTAGTTTTAGGATATTGTTTAAGAATAGATTTCGGTTGTGCTGGCTATCCTGCAATTATGGTAGCCGTAATTTGA

Protein sequence

MKYQVIDGTSQYWPSFFPSTHVRTISFWQLVNCPTALQEIEVFPTYKKALKETTSKNTSYPDVTFHTLGKAPFFDVVIESSEKKITFLTYECRASGIITYLDASCTRWKQSVRSFQTLIIIILDASYMSSGVRGALNAIFGWSRMASEVMGDPDAISDSSRMASGVKGSPDNRNEKEKERDINYTGETKRRETFSRLRRVTLVVYHCTSLFEDFNDELVLGYCLRIDFGCAGYPAIMVAVI

Homology

[Close]

BLAST of MELO3C035270 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-10
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 37   LQEIEVFPTYKKALKETTSKNTSYPDVTFHTLGKAPFFDVVIESSEKKITFLT 90
            LQEI+VF T+KKA +ETTSKNT YPD TF+TL K  FFD+VIESS K+ +F T
Sbjct: 1244 LQEIKVFSTHKKASEETTSKNTPYPDTTFYTLDKGTFFDIVIESSGKRTSFST 1296

[Close]

BLAST of MELO3C035270 vs. NCBI nr
Match: TYK23854.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-06
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 125 ASYMSSGVRGALNAIFGWSRMASEVMGDPDAISDSSRMASGVKGSPDNRNEKEKERDINY 184
           AS  SSGVR AL+A F  S MAS+VMGDPD ISDSSR A GV+GSPD    + KE  I+ 
Sbjct: 2   ASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTALGVRGSPDVFVLRRKE--IDS 61

Query: 185 TGETKRRE 193
           TG T RRE
Sbjct: 62  TGGTMRRE 67

[Close]

BLAST of MELO3C035270 vs. NCBI nr
Match: KAA0051366.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-06
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 125 ASYMSSGVRGALNAIFGWSRMASEVMGDPDAISDSSRMASGVKGSPDNRNEKEKERDINY 184
           AS  SSGVR AL+A F  S MAS+VMGDPD ISDSSR   GV+GSPD        R+I+ 
Sbjct: 2   ASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTTLGVRGSPD---VFVLRREIDS 61

Query: 185 TGETKRRE 193
           TG T RRE
Sbjct: 62  TGGTMRRE 66

[Close]

BLAST of MELO3C035270 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-10
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 37   LQEIEVFPTYKKALKETTSKNTSYPDVTFHTLGKAPFFDVVIESSEKKITFLT 90
            LQEI+VF T+KKA +ETTSKNT YPD TF+TL K  FFD+VIESS K+ +F T
Sbjct: 1244 LQEIKVFSTHKKASEETTSKNTPYPDTTFYTLDKGTFFDIVIESSGKRTSFST 1296

[Close]

BLAST of MELO3C035270 vs. ExPASy TrEMBL
Match: A0A5D3DJN9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00240 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-07
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 125 ASYMSSGVRGALNAIFGWSRMASEVMGDPDAISDSSRMASGVKGSPDNRNEKEKERDINY 184
           AS  SSGVR AL+A F  S MAS+VMGDPD ISDSSR A GV+GSPD    + KE  I+ 
Sbjct: 2   ASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTALGVRGSPDVFVLRRKE--IDS 61

Query: 185 TGETKRRE 193
           TG T RRE
Sbjct: 62  TGGTMRRE 67

[Close]

BLAST of MELO3C035270 vs. ExPASy TrEMBL
Match: A0A5A7UAZ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00910 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-06
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 125 ASYMSSGVRGALNAIFGWSRMASEVMGDPDAISDSSRMASGVKGSPDNRNEKEKERDINY 184
           AS  SSGVR AL+A F  S MAS+VMGDPD ISDSSR   GV+GSPD        R+I+ 
Sbjct: 2   ASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTTLGVRGSPD---VFVLRREIDS 61

Query: 185 TGETKRRE 193
           TG T RRE
Sbjct: 62  TGGTMRRE 66

The following BLAST results are available for this feature:

BLAST of MELO3C035270 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067243.1	9.3e-10	67.92	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
TYK23854.1	1.6e-06	63.24	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0051366.1	8.1e-06	60.29	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGM4	4.5e-10	67.92	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3DJN9	7.9e-07	63.24	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UAZ2	3.9e-06	60.29	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C035270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035270.1	MELO3C035270.1	mRNA