MELO3C035265 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035265
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	chr12: 909150 .. 909422 (-)
RNA-Seq Expression	MELO3C035265
Synteny	MELO3C035265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATAACAGAGTTTATGTTATTCATATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTAATGATTTCATAACTATCTTTGTAGCTCTAGAATCTTTCAGTTTATTTCTTACCTATTATCTGGATATACCAAGAAAGACGTACAGTCTAATGAGGCTACTACGAAATATTGACTCATGGGTGGAGAAAATTCTTCTGTTCTGGTTCATGCTTTCTCTTGGCTATATGGTTCATCCGAGGGAGAGATCGAGCTTCAAGAAATAG

mRNA sequence

ATGGCTATAACAGAGTTTATGTTATTCATATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTAATGATTTCATAACTATCTTTGTAGCTCTAGAATCTTTCAGTTTATTTCTTACCTATTATCTGGATATACCAAGAAAGACGTACAGTCTAATGAGGCTACTACGAAATATTGACTCATGGGTGGAGAAAATTCTTCTGTTCTGGTTCATGCTTTCTCTTGGCTATATGGTTCATCCGAGGGAGAGATCGAGCTTCAAGAAATAG

Coding sequence (CDS)

ATGGCTATAACAGAGTTTATGTTATTCATATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTAATGATTTCATAACTATCTTTGTAGCTCTAGAATCTTTCAGTTTATTTCTTACCTATTATCTGGATATACCAAGAAAGACGTACAGTCTAATGAGGCTACTACGAAATATTGACTCATGGGTGGAGAAAATTCTTCTGTTCTGGTTCATGCTTTCTCTTGGCTATATGGTTCATCCGAGGGAGAGATCGAGCTTCAAGAAATAG

Protein sequence

MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNIDSWVEKILLFWFMLSLGYMVHPRERSSFKK

Homology

[Close]

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot
Match: P0CC32 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
           MAITEF+LFILTATLGGMFLCGAND ITIFVALE FSL
Sbjct: 124 MAITEFLLFILTATLGGMFLCGANDLITIFVALECFSL 161

[Close]

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot
Match: P0CC82 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lemna minor OX=4472 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
           MAITEF+LFILTATLGGMFLCGAND ITIFVALE FSL
Sbjct: 124 MAITEFLLFILTATLGGMFLCGANDLITIFVALECFSL 161

[Close]

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot
Match: P0CC62 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Glycine max OX=3847 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
           MAITEF+LFILTATLGGMFLCGAND ITIFVALE FSL
Sbjct: 124 MAITEFLLFILTATLGGMFLCGANDLITIFVALECFSL 161

[Close]

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot
Match: P0CC33 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
           MAITEF+LFILTATLGGMFLCGAND ITIFVALE FSL
Sbjct: 124 MAITEFLLFILTATLGGMFLCGANDLITIFVALECFSL 161

[Close]

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot
Match: P0CC83 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lemna minor OX=4472 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-11
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
           MAITEF+LFILTATLGGMFLCGAND ITIFVALE FSL
Sbjct: 124 MAITEFLLFILTATLGGMFLCGANDLITIFVALECFSL 161

[Close]

BLAST of MELO3C035265 vs. NCBI nr
Match: QVY59314.1 (NADH dehydrogenase subunit 2 [Dendrobium zhenghuoense] >QVY59322.1 NADH dehydrogenase subunit 2 [Dendrobium zhenghuoense])

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-22
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL---FLTYYLDIPRKTYSLMRLL 60
           MAITEF+LF+LTATLGGMFLCGAND ITIFVA E FSL    L+ YLDIPR+ Y LMRLL
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYLDIPREMYGLMRLL 183

Query: 61  RNIDSWVEKILLFWFMLSLGYMVH 82
           RNI SWV + LLFWFM+  GYMV+
Sbjct: 184 RNIYSWVGQALLFWFMVYPGYMVY 207

[Close]

BLAST of MELO3C035265 vs. NCBI nr
Match: VDD65556.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNI 60
           MAITEF+LF+LTATLGGMFLCGAND ITIFVA E FSL  +Y L    K     + +R+ 
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSL-CSYLLSGYTK-----KDVRSN 183

Query: 61  DSWVEKILL------FWFMLSLGYMVHPRERSSFKK 91
           ++ ++ +L+      FWFM+SLGYMVHP ER SFKK
Sbjct: 184 EATMKYLLMGGASSSFWFMVSLGYMVHPGERLSFKK 213

[Close]

BLAST of MELO3C035265 vs. NCBI nr
Match: VVW91344.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 33 LESFSLFL-TYYLDIPRKTYSLMRLLRNIDSWVEKILLFWFMLSLGYMVHPRERSSFKK 91
          L++ S++  TYYLDIPR+ Y LMRLLRNI SWV + LLFWFM+SLGYMVHP ERSSFKK
Sbjct: 1  LQNVSVYAPTYYLDIPREMYGLMRLLRNIYSWVGQALLFWFMVSLGYMVHPGERSSFKK 59

[Close]

BLAST of MELO3C035265 vs. NCBI nr
Match: XP_034910604.1 (LOW QUALITY PROTEIN: NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic [Populus alba])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 50/91 (54.95%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFL-TYYLDIPRKTYSLMRLLRN 60
          MAITEF+LF                       L++ S++  TYYLDIPRK Y LMRLLRN
Sbjct: 1  MAITEFLLF-----------------------LQNVSVYAHTYYLDIPRKMYGLMRLLRN 60

Query: 61 IDSWVEKILLFWFMLSLGYMVHPRERSSFKK 91
          I SWV + LLFWFM+SLGYMV P ERSSFK+
Sbjct: 61 IYSWVGQALLFWFMVSLGYMVRPGERSSFKE 68

[Close]

BLAST of MELO3C035265 vs. NCBI nr
Match: KAG9438516.1 (hypothetical protein H6P81_021549 [Aristolochia fimbriata])

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-13
Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 19  FLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNIDSWVEKILLFWFMLSLGY 78
           FLCGAND ITIFVA E FSL         ++ Y LMRLLRNI SWV + LLFWFM+SLGY
Sbjct: 160 FLCGANDLITIFVAPECFSLCSYLLSGYTKEMYGLMRLLRNIYSWVGQALLFWFMVSLGY 219

Query: 79  MVHP---RERSS 88
           MVHP   R+R+S
Sbjct: 220 MVHPGGGRDRAS 231

[Close]

BLAST of MELO3C035265 vs. ExPASy TrEMBL
Match: A0A3P6GYM6 (Proton_antipo_M domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC37T60784H PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNI 60
           MAITEF+LF+LTATLGGMFLCGAND ITIFVA E FSL  +Y L    K     + +R+ 
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSL-CSYLLSGYTK-----KDVRSN 183

Query: 61  DSWVEKILL------FWFMLSLGYMVHPRERSSFKK 91
           ++ ++ +L+      FWFM+SLGYMVHP ER SFKK
Sbjct: 184 EATMKYLLMGGASSSFWFMVSLGYMVHPGERLSFKK 213

[Close]

BLAST of MELO3C035265 vs. ExPASy TrEMBL
Match: A0A5K1I1F9 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30906 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.6e-14
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 33 LESFSLFL-TYYLDIPRKTYSLMRLLRNIDSWVEKILLFWFMLSLGYMVHPRERSSFKK 91
          L++ S++  TYYLDIPR+ Y LMRLLRNI SWV + LLFWFM+SLGYMVHP ERSSFKK
Sbjct: 1  LQNVSVYAPTYYLDIPREMYGLMRLLRNIYSWVGQALLFWFMVSLGYMVHPGERSSFKK 59

[Close]

BLAST of MELO3C035265 vs. ExPASy TrEMBL
Match: A0A453J1M1 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFL-TYYLDIPRKTYSLMRLL 58
          MAITEF+LF+LTATLGGMFLCG ND ITIFVAL++ S+++ TY LDIPR+ Y LMRLL
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGGNDLITIFVALQNVSVYVPTYCLDIPREIYGLMRLL 58

[Close]

BLAST of MELO3C035265 vs. ExPASy TrEMBL
Match: A0A446UR27 (Proton_antipo_M domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Bv1G217370 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNI 60
           MAITEF+LF+LTATLGGMFLCGAN+ ITIFVA E FSL  +Y L    K     R LR+ 
Sbjct: 123 MAITEFLLFVLTATLGGMFLCGANNLITIFVAPECFSL-CSYLLSGYTK-----RDLRSN 182

Query: 61  DSWVE------KILLFWFMLSLGYMVH 82
           ++ ++      + LLFWFM+SLGYMVH
Sbjct: 183 EATMKYLLMAGQALLFWFMVSLGYMVH 203

[Close]

BLAST of MELO3C035265 vs. ExPASy TrEMBL
Match: A0A446UR16 (Proton_antipo_M domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Bv1G217370 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1   MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSLFLTYYLDIPRKTYSLMRLLRNI 60
           MAITEF+LF+LTATLGGMFLCGAN+ ITIFVA E FSL  +Y L    K     R LR+ 
Sbjct: 56  MAITEFLLFVLTATLGGMFLCGANNLITIFVAPECFSL-CSYLLSGYTK-----RDLRSN 115

Query: 61  DSWVE------KILLFWFMLSLGYMVH 82
           ++ ++      + LLFWFM+SLGYMVH
Sbjct: 116 EATMKYLLMAGQALLFWFMVSLGYMVH 136

[Close]

BLAST of MELO3C035265 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
          MAITEF+LFILTATLGGMFLCGAND ITIFVA E FSL
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDLITIFVAPECFSL 38

[Close]

BLAST of MELO3C035265 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MAITEFMLFILTATLGGMFLCGANDFITIFVALESFSL 39
          MAITEF+LFILTATLGGMFLCGAND ITIFVA E FSL
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDLITIFVAPECFSL 38

The following BLAST results are available for this feature:

BLAST of MELO3C035265 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CC32	9.4e-11	92.11	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Arabidopsis thalian...	[more]
P0CC82	9.4e-11	92.11	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lemna minor OX=4472...	[more]
P0CC62	9.4e-11	92.11	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Glycine max OX=3847...	[more]
P0CC33	9.4e-11	92.11	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Arabidopsis thalian...	[more]
P0CC83	9.4e-11	92.11	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lemna minor OX=4472...	[more]

BLAST of MELO3C035265 vs. NCBI nr


Match Name	E-value	Identity	Description
QVY59314.1	6.7e-22	73.81	NADH dehydrogenase subunit 2 [Dendrobium zhenghuoense] >QVY59322.1 NADH dehydrog...	[more]
VDD65556.1	3.6e-15	58.33	unnamed protein product [Brassica oleracea]	[more]
VVW91344.1	1.1e-13	72.88	unnamed protein product, partial [Nymphaea colorata]	[more]
XP_034910604.1	3.3e-13	54.95	LOW QUALITY PROTEIN: NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic [...	[more]
KAG9438516.1	5.7e-13	63.89	hypothetical protein H6P81_021549 [Aristolochia fimbriata]	[more]

BLAST of MELO3C035265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3P6GYM6	1.7e-15	58.33	Proton_antipo_M domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLSC3...	[more]
A0A5K1I1F9	5.6e-14	72.88	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A453J1M1	2.3e-12	74.14	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A446UR27	8.9e-12	58.62	Proton_antipo_M domain-containing protein OS=Triticum turgidum subsp. durum OX=4...	[more]
A0A446UR16	8.9e-12	58.62	Proton_antipo_M domain-containing protein OS=Triticum turgidum subsp. durum OX=4...	[more]

BLAST of MELO3C035265 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00890.1	4.4e-11	89.47	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	4.4e-11	89.47	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45564	FAMILY NOT NAMED	coord: 1..62
None	No IPR available	PANTHER	PTHR45564:SF7	NADH:QUINONE OXIDOREDUCTASE/MRP ANTIPORTER, MEMBRANE SUBUNIT-RELATED	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035265.1	MELO3C035265.1	mRNA