MELO3C035256.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C035256.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr12: 165354 .. 166409 (-)
RNA-Seq ExpressionMELO3C035256.jh1
SyntenyMELO3C035256.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAATTTGACAATCATAAAAATTTGGGGAATATGAGAAAAAAATTGGGTCAAAAGATGGAGCGACCGCGGAATGATCCTTCGAAACCATGCTCAGGTAGGATGAAGGCCTCATGTCGATGCAATTTGAGAGAAAGGAAAGGAAATTGGTGCTGACGTGGGAATTTTCACAGCGGTGGCGAGCGATGGAAAGAAAAAGAACAAATACAAACGATCGACCGGAAATTGAAAAAAAAGGAAAAAAAAAAGGAATTATCAGCTGTTGAGTTCCGATGACCACTCCAATTATTTGCGGAGGAACAACAGAAATTCTGGGGATTATAGACCTTATATCTTGCATCAAGCTGTTTTGGTGATTTTCGATTGCCGAATTGCAAAGTCTGGGAGATTGAAAGTTGTTTATTTGAAAACTGAGAAAGGTTTATTAATTGAAATTAAACCATATGTTCGTCTTCCAAGGACGCAGAAACGATTTTTGTGGTGGATGCAATGGCTCATGGGAAAATTGAAACCGATTACGCCGATGATCTATTAGCAAGTTGAGGAAAGAGCTAGTTTGGTGGATTTTAATGTTGGTGAAGGTTTCGGTTCATGAGGCAGCTTGGTTGCTGTGCAAGTTCGAGAACAAGAAGCGGATTTCTTTGAGACTGCAAGGTATTAATTTCAATTTTAATATCATAGTAGCTTCAATATCTGTGCTGATCAGAAAAAGATTTTGATATGTATTTTATTATGATTCAATCTAAAACAAGGAGTCAGGCGTACAAGTCAGAGAAGAAGAAGACGATTCTACAGATGATTCAATATCGTCGTCTTGCCAAAAACGACTTTTCCCCCTTTTTCTCTTCCCCGCTTTCGGATATGCAAAACAGAGCCAGTCGTCCGTCTTGCTGGTCTCGCTTTCCTTCCTTTGCTTGCTTTTATGAGCACCGGCATAAGAGGGATCATGATATGAGGGGTAAGAAGACCAATTCTCATCCGCCGGTGACCCCACTACGCGGTAGAAGGGAGAAGAGTGAATTCATCACAAGGACATTTGCTAAGGAGCTAAGCTGA

mRNA sequence

TTCAAATTTGACAATCATAAAAATTTGGGGAATATGAGAAAAAAATTGGGTCAAAAGATGGAGCGACCGCGGAATGATCCTTCGAAACCATGCTCAGGTAGGATGAAGGCCTCATGTCGATGCAATTTGAGAGAAAGGAAAGGAAATTGGTGCTGACGTGGGAATTTTCACAGCGGTGGCGAGCGATGGAAAGAAAAAGAACAAATACAAACGATCGACCGGAAATTGAAAAAAAAGGAAAAAAAAAAGGAATTATCAGCTGTTGAGTTCCGATGACCACTCCAATTATTTGCGGAGGAACAACAGAAATTCTGGGGATTATAGACCTTATATCTTGCATCAAGCTGTTTTGGTGATTTTCGATTGCCGAATTGCAAAGTCTGGGAGATTGAAAGTTGTTTATTTGAAAACTGAGAAAGGTTTATTAATTGAAATTAAACCATATGTTCGTCTTCCAAGGACGCAGAAACGATTTTTGTGGTGGATGCAATGGCTCATGGGAAAATTGAAACCGATTACGCCGATGATCTATTAGCAAGTTGAGGAAAGAGCTAGTTTGGTGGATTTTAATGTTGGTGAAGGTTTCGGTTCATGAGGCAGCTTGGTTGCTGTGCAAGTTCGAGAACAAGAAGCGGATTTCTTTGAGACTGCAAGGCGTACAAGTCAGAGAAGAAGAAGACGATTCTACAGATGATTCAATATCGTCGTCTTGCCAAAAACGACTTTTCCCCCTTTTTCTCTTCCCCGCTTTCGGATATGCAAAACAGAGCCAGTCGTCCGTCTTGCTGGTCTCGCTTTCCTTCCTTTGCTTGCTTTTATGAGCACCGGCATAAGAGGGATCATGATATGAGGGGTAAGAAGACCAATTCTCATCCGCCGGTGACCCCACTACGCGGTAGAAGGGAGAAGAGTGAATTCATCACAAGGACATTTGCTAAGGAGCTAAGCTGA

Coding sequence (CDS)

ATGATTCAATATCGTCGTCTTGCCAAAAACGACTTTTCCCCCTTTTTCTCTTCCCCGCTTTCGGATATGCAAAACAGAGCCAGTCGTCCGTCTTGCTGGTCTCGCTTTCCTTCCTTTGCTTGCTTTTATGAGCACCGGCATAAGAGGGATCATGATATGAGGGGTAAGAAGACCAATTCTCATCCGCCGGTGACCCCACTACGCGGTAGAAGGGAGAAGAGTGAATTCATCACAAGGACATTTGCTAAGGAGCTAAGCTGA

Protein sequence

MIQYRRLAKNDFSPFFSSPLSDMQNRASRPSCWSRFPSFACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRREKSEFITRTFAKELS
Homology
[Close]
BLAST of MELO3C035256.jh1 vs. NCBI nr
Match: TYJ97227.1 (hypothetical protein E5676_scaffold194G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 2.08e-43
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 9   KNDFSPFFSSPLSDMQNRASRPSCWSRFPSFACFYEHRHKRDHDMRGKKTNSHPPVTPLR 68
           K  F   FSSPLSDMQNRASRPSCWSRFPS ACFYEHRHKRDHDMRGKKTNSHPPVTPLR
Sbjct: 50  KRLFPLSFSSPLSDMQNRASRPSCWSRFPSLACFYEHRHKRDHDMRGKKTNSHPPVTPLR 109

Query: 69  GRREKSEFITRTFAKELS 86
           GRRE+SEFITR FAKELS
Sbjct: 110 GRREESEFITRAFAKELS 127

[Close]
BLAST of MELO3C035256.jh1 vs. NCBI nr
Match: KAA0059971.1 (hypothetical protein E6C27_scaffold340G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 2.95e-43
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 16  FSSPLSDMQNRASRPSCWSRFPSFACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRREKSE 75
           FSSPLSDMQNRASRPSCWSRFPS ACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRRE+SE
Sbjct: 57  FSSPLSDMQNRASRPSCWSRFPSLACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRREESE 116

Query: 76  FITRTFAKELS 86
           FITR FAKELS
Sbjct: 117 FITRAFAKELS 127

[Close]
BLAST of MELO3C035256.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00150 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 1.01e-43
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 9   KNDFSPFFSSPLSDMQNRASRPSCWSRFPSFACFYEHRHKRDHDMRGKKTNSHPPVTPLR 68
           K  F   FSSPLSDMQNRASRPSCWSRFPS ACFYEHRHKRDHDMRGKKTNSHPPVTPLR
Sbjct: 50  KRLFPLSFSSPLSDMQNRASRPSCWSRFPSLACFYEHRHKRDHDMRGKKTNSHPPVTPLR 109

Query: 69  GRREKSEFITRTFAKELS 86
           GRRE+SEFITR FAKELS
Sbjct: 110 GRREESEFITRAFAKELS 127

[Close]
BLAST of MELO3C035256.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V2J7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00110 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 1.43e-43
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 16  FSSPLSDMQNRASRPSCWSRFPSFACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRREKSE 75
           FSSPLSDMQNRASRPSCWSRFPS ACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRRE+SE
Sbjct: 57  FSSPLSDMQNRASRPSCWSRFPSLACFYEHRHKRDHDMRGKKTNSHPPVTPLRGRREESE 116

Query: 76  FITRTFAKELS 86
           FITR FAKELS
Sbjct: 117 FITRAFAKELS 127

The following BLAST results are available for this feature:
BLAST of MELO3C035256.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97227.12.08e-4389.74hypothetical protein E5676_scaffold194G00150 [Cucumis melo var. makuwa][more]
KAA0059971.12.95e-4395.77hypothetical protein E6C27_scaffold340G00110 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035256.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C035256.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BDM51.01e-4389.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2J71.43e-4395.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C035256.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035256.jh1.t1MELO3C035256.jh1.t1mRNA