MELO3C035219 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035219
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr11: 28898519 .. 28900115 (-)
RNA-Seq Expression	MELO3C035219
Synteny	MELO3C035219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTATTAACTTGTGAGAACAAACCTAATTGCAAAATCGTTTAACATTGAAATAAAAGAACCCCAAGCTCTTTGCCATTTAAACACCAAGAAACTAAAACCCCAAATGGCAGAAGTAGTGATCTCATAACACAATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCGATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGTTTTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGATGGTTAGTTTAATTTTCCTTTAATATATACATGTTCGTTCTTGGAAGTTCTTTAATGTCAACATTACATTCAAATTGTTAGGCCATCTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGGGTCAATGGATGCCTGCTATGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGGTAAATAATTCTCCCATTCTTATATTTCCACATTATATATATTATTTTGAAAGGAAAATTAGTGGTTATGATCTTAATAAGTTTGATGTTATATTTCACATACAGTTTTAGTCACACTAACGAATTCACAAGTCAAATTCTCTTATGCTGGAACACAAATGATTCTTACTCAAGAGGTACTTATTAATTTATTTATAAACAGTTGCAGTTACTTTCTAAAGCTGTCATTAAATCAATTTAATAAGAACAACAATGTACTAATTATTCCTGCCAACAACTGAGTAGTGAAGTTTGATGTTATATACTGCAGAACAACTGATGAAGAGATTGCCAAATCTATGTTCTAGACCGAGCTGGTGTGTCATGTGTAAGAGGAATGAAGAAGACAGGAAACACCTCTTTATCCTATGCCCCTTTGCAAAGTCTATTTGGAGAACAATATCTTCACACTTAAGCAGCAATGTAAACTGCCTCAGTCCAAAGGAGCTTTGTTTTTCCATGTGCAGCTGGAATCAGAAAACAAAGAAAAATGTCATTCTCTTTAACACCTATGCCTCTGCCCTTTGGAACATTTGGTTGGAAAGGAATGCCCGTATCTTCAATGGGAAAGAAAAAACAGCTGCAGAAATATGGGAAGATATAAAAGCTCTTGCTGGACTATGGACTAGTAGATCTTCTCTCTTCTCAAATTATCAAGCTTCTTCCATAGCACTAAACCTTAATGCTTTTAGTTAGTTTGCACTTCCTTAGTTTTCTCTTTCTCTATGTTTGCACTTTGTCCTTTCGGGGCTGTTCTCAAGCCCTTATTTGGGTCTCCCTGCTTCCGTGTATTGCTTTTGTTATATCTTAATGAAGCGGGAATGATGATGGTGCTAAGGGGGTGTCCACCTAGTGGAGATGCCCGGGT

mRNA sequence

TTTTCTTATTAACTTGTGAGAACAAACCTAATTGCAAAATCGTTTAACATTGAAATAAAAGAACCCCAAGCTCTTTGCCATTTAAACACCAAGAAACTAAAACCCCAAATGGCAGAAGTAGTGATCTCATAACACAATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCGATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGTTTTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGATGGCCATCTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGGGTCAATGGATGCCTGCTATGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGCGGGAATGATGATGGTGCTAAGGGGGTGTCCACCTAGTGGAGATGCCCGGGT

Coding sequence (CDS)

ATGTTCGTCTTTATACTGGAAGAAATCCACAGCTTCGTCGATGCCGTCTCCGTCCTCGCCGGCCTTGGCTACGTTTTCAATCTCAAATTCTCACCAGAAATGTTCTCAATAATGGCCAACCCCACACCTTCCCCTTCTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACATCAACCCCTTTTTCCCTGAAATGTTCGATATGGAACGAACCGGTTTTTCTTCCCTCACGTTCTCTTTCGCAGATTCGCTCCATGCCGACCTCACATTTTGCAGTCGTGATGGCCATCTTCGAGAGATTGATTTCCCAATGTATCATTCGGACGGGTCAATGGATGCCTGCTATGATCAGTTGGATTGGGAAACTTTCGTCTCCTTCAGTTCACAAGAGTTCATTAACATTGTAACGTTGAATAATTTTGATTCTGCGGGAATGATGATGGTGCTAAGGGGGTGTCCACCTAGTGGAGATGCCCGG

Protein sequence

MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDSAGMMMVLRGCPPSGDAR

Homology

[Close]

BLAST of MELO3C035219 vs. NCBI nr
Match: TYK02997.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 8.9e-87
Identity = 159/162 (98.15%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120
           QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120

Query: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDSAGMM 163
           YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDS  +M
Sbjct: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDSEQLM 162

[Close]

BLAST of MELO3C035219 vs. NCBI nr
Match: KGN45638.2 (hypothetical protein Csa_005465, partial [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 5.4e-52
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRD 111
           QYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRD
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRD 110

[Close]

BLAST of MELO3C035219 vs. NCBI nr
Match: WP_217833378.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 5  ILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSC 64
          +L+EIH FVDA+S+LAGL YVF+LKFSP+MFSIM N TPS  CTIALQLFPPFFNQ YSC
Sbjct: 1  MLDEIHEFVDAISILAGLDYVFDLKFSPKMFSIMVNRTPSSRCTIALQLFPPFFNQGYSC 60

Query: 65 QQLHYSWIYINPFFPE 81
          QQLHYSWIYIN FFPE
Sbjct: 61 QQLHYSWIYINQFFPE 76

[Close]

BLAST of MELO3C035219 vs. NCBI nr
Match: KAG6575236.1 (hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-25
Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MF FIL++ H   +A+ V+A +  +  LKFS E  SIM + +P  +C IA+QL PP+F Q
Sbjct: 1   MFFFILDQTHELAEALYVIASVTDIAYLKFSMENMSIMGSASPETACIIAIQLCPPYF-Q 60

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120
            Y+C  LHYSWI I+  FP M D+ R GFSSL+FSF     A+L F      LRE DF +
Sbjct: 61  TYTCDHLHYSWINIHKIFPLMSDLNRAGFSSLSFSFTAPNLANLVFLG-PSRLREADFGL 120

Query: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVT 153
             S+GS D      D+ TFV+  S+EFINI+T
Sbjct: 121 NPSNGSRD--IGPYDYSTFVTLESKEFINIIT 148

[Close]

BLAST of MELO3C035219 vs. NCBI nr
Match: XP_023548336.1 (uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-24
Identity = 80/182 (43.96%), Postives = 95/182 (52.20%), Query Frame = 0


Query: 9   IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA SVLA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETFDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT---------------------- 128
           HY +IYI  F+  M + ER GFSSLTF+F +    D                        
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVDSNVALRVMSEACINVYSCTIPWRF 120

Query: 129 ---------FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNN 158
                    F   +GH  E++ PM+ S   MD      D+ TFVS  SQEFINIVT  N+
Sbjct: 121 LAATAILKFFHGSNGHFEEVELPMFPSSKVMDV--GPFDFGTFVSIDSQEFINIVTCFND 179

[Close]

BLAST of MELO3C035219 vs. ExPASy TrEMBL
Match: A0A5D3BU35 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00910 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.3e-87
Identity = 159/162 (98.15%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120
           QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM
Sbjct: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120

Query: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDSAGMM 163
           YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDS  +M
Sbjct: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVTLNNFDSEQLM 162

[Close]

BLAST of MELO3C035219 vs. ExPASy TrEMBL
Match: A0A0A0K833 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.3e-53
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           MFVFIL+EIHSFVDAVS LAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ
Sbjct: 1   MFVFILDEIHSFVDAVSALAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDG 112
           QYSCQQLHYSWIYIN FFPEMF +ERTGFSSLTFSFADS HADLTFCSRDG
Sbjct: 61  QYSCQQLHYSWIYINHFFPEMFHLERTGFSSLTFSFADSHHADLTFCSRDG 111

[Close]

BLAST of MELO3C035219 vs. ExPASy TrEMBL
Match: A0A6J1KWL1 (uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 80/182 (43.96%), Postives = 95/182 (52.20%), Query Frame = 0


Query: 9   IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA SVLA     +F++KFSP MFSIMA  TPS  C IALQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSRCIIALQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT---------------------- 128
           HY +IYI  F+  M + ER GFSSLTF+F +    D                        
Sbjct: 61  HYKFIYIESFYDFMHNFERKGFSSLTFTFPEPDRVDSNVALRVMSEACINVYSCTIPWRF 120

Query: 129 ---------FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNN 158
                    F   +GH  E++ PM+ S   MD      D+ TFVS  SQEFINIVT  N+
Sbjct: 121 LAATAILKFFDGSNGHFEEVELPMFPSSKVMDV--GAFDFGTFVSIDSQEFINIVTCFND 179

[Close]

BLAST of MELO3C035219 vs. ExPASy TrEMBL
Match: A0A6J1H4N0 (uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC111460009 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 79/182 (43.41%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 9   IHSFVDAVSVLA-GLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQQYSCQQL 68
           +H  VDA SVLA     +F++KFSP MFSIMA  TPS  C I LQL P FFN  Y C QL
Sbjct: 1   MHDLVDATSVLAETYDDIFDIKFSPTMFSIMAATTPSSHCIIELQLSPQFFN-AYLCHQL 60

Query: 69  HYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLT---------------------- 128
           HY +IYI  F+  M + ER GFSSLTF+F +    D                        
Sbjct: 61  HYKFIYIEDFYDFMHNFERKGFSSLTFTFPEPDRVDSNVAVRVMSEACINVYSCTIPWRF 120

Query: 129 ---------FCSRDGHLREIDFPMYHSDGSMDACYDQLDWETFVSFSSQEFINIVT-LNN 158
                    F   +GH  E++ PM+ S   MD      D  TFVS  SQEFINIVT  N+
Sbjct: 121 LAATAILKFFHGSNGHFEEVELPMFPSCKVMDV--GAFDIGTFVSIDSQEFINIVTYFND 179

[Close]

BLAST of MELO3C035219 vs. ExPASy TrEMBL
Match: A0A6J1L2R2 (uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 60/152 (39.47%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 1   MFVFILEEIHSFVDAVSVLAGLGYVFNLKFSPEMFSIMANPTPSPSCTIALQLFPPFFNQ 60
           +F F+L ++   VDA SV+A    + ++KFS EMF+IMA+  P+    IAL L+P FF+ 
Sbjct: 6   IFKFVLNQMQDLVDAASVVASADDMADMKFSREMFAIMADSYPALGGVIALHLWPQFFD- 65

Query: 61  QYSCQQLHYSWIYINPFFPEMFDMERTGFSSLTFSFADSLHADLTFCSRDGHLREIDFPM 120
           +Y C +L  SW ++   FP M DME +GF+SL+F+      A+L F + +G   E++F +
Sbjct: 66  EYVCNELLKSWTFVKNLFPLMIDMEESGFNSLSFTVTYPESAELKFQAPNGLSNEVEFEL 125

Query: 121 YHSDGSMDACYDQLDWETFVSFSSQEFINIVT 153
             S   ++      D+ +FVS  S+EF+NIVT
Sbjct: 126 IPSLDPLEV--GDFDFSSFVSLDSEEFVNIVT 154

The following BLAST results are available for this feature:

BLAST of MELO3C035219 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035219 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02997.1	8.9e-87	98.15	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KGN45638.2	5.4e-52	94.55	hypothetical protein Csa_005465, partial [Cucumis sativus]	[more]
WP_217833378.1	1.2e-27	81.58	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KAG6575236.1	2.5e-25	47.37	hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023548336.1	3.7e-24	43.96	uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C035219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BU35	4.3e-87	98.15	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0K833	5.3e-53	94.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002320 PE=4 SV=1	[more]
A0A6J1KWL1	2.3e-24	43.96	uncharacterized protein LOC111498888 OS=Cucurbita maxima OX=3661 GN=LOC111498888...	[more]
A0A6J1H4N0	5.7e-23	43.41	uncharacterized protein LOC111460009 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A6J1L2R2	1.0e-19	39.47	uncharacterized protein LOC111499308 OS=Cucurbita maxima OX=3661 GN=LOC111499308...	[more]

BLAST of MELO3C035219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..162 e-value: 2.5E-5 score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035219.1	MELO3C035219.1	mRNA