MELO3C035130 (gene) Melon (DHL92) v4

Overview
NameMELO3C035130
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr11: 23423751 .. 23425262 (-)
RNA-Seq ExpressionMELO3C035130
SyntenyMELO3C035130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCATTTGAAACATATTTAAGTTAACCAAGCTAATGTGTTGTTTTTGTAATGTGTAGCGGTTTGTTGTTCTTGATTTTAATGATCAAGCAATGAATAGGTTCATTGAGCATCAGATGCTTAACACCTTTAAAGAGTTTCGAGGCGACTGTCATAGGTACTTCAAAAAGTACAGCAACCCCGAGAAGGCTCGTGTTAACCCACCACACCTATTGGTGGGACGTGATGAGGATTGACACTACTTCTGTGATCACTACATGAGCCATGCATTCCAAGTGAGCAACTGAACCCTTTGTCATAGTTAATTATGATTTCAACTTTTAATATCTATAAGAAATAAACAATATAATTTTTTTCATGTAGGAGCAATCACAGACGAACAAGGCTGCTAGACAGAAACAACCTTACAATCATAGCAGCAGGTCAAAGTCATTTCTACAACGATAAAACGGGCTCGCTGAGAAAAGAGGGGAGCCAGTCGACCGTGTGGAGTTGTTTCGGCAAACATGTGTTCAAATTCGTGTCCCAGGCTGTGGAGGATGCGCATGTAAGTTATCTAAGCAACACTTCTGCACTTATTTATCCTCTTTAATATATAACATATTTTTTACTTACTAAGATAGTTTCTAAATTTGTTGCAGCGTCAAATGCTAAAAGTCCAGTCCTAGCCTACCCTAGAGGATAGTCAGTCACTCTCTGGGGATGAGATATGCGAGATAGAAGATCGGACTATTTAAAAGGCCTTGGTTGGGGACCCAAGCCCAAGGCTCGCAAGACAACCAATGCATGCAGTTCCATGACGTCATGTTTACAGTCCACATAGAGCTTCAATTACAGGTTAAGCTTGATCAAGCTATGCAACAATTGAAGAACAGACAAGAAATCACGAAATGTTAGTTTCAGAAGTGAAACGAATGCGGAAGCTCATAGAAGACATGACTCGGGCATAGTAAGGACCGCCACATGATCCCTAGCTTTGCAGTACGTATATATGTTTCCATTATTCTTAAGTTCTTGAAATGATAGTATACAGTGTTGATATGCATATATATGTACTTAACTTAGCCACTTTTTGTATCATTGTAAGACCCGCGGTGTAGAATGGTGTATGAGGCTCGTTAAGAGATGTATGTTATAAAGTATAGCTTTCTTTATGCTTTTTTTTTAATGAAGAATATTTTTTATTTGTATTATGAACGTTGTTATATATCTTGAACTTCTTTGTATTATGAACATTTAATATTTTGTTGAATTTGTGTTTGTATTTCATAATTTACAAATTTATTTTGAATTTTCTTTAATTGTATAGAAAAGGAATGCGAATATTTTAGGAAATAGATCTTATAGAAAAATATTTCAGGAAAAAATAAAATTTACATATTTAAAATATTTCTCGATGCAGTACAAACGTCGAGAATATGGTGCAAATGTCACATCGGGGATAGTTATTTCCGACGCATGGAAAACATCAGATATAAACACATCGGGAGTAGTTATTTCGATGCATAGATGA

mRNA sequence

TTTCATTTGAAACATATTTAAGTTAACCAAGCTAATGTGTTGTTTTTGTAATGTGTAGCGGTTTGTTGTTCTTGATTTTAATGATCAAGCAATGAATAGGTTCATTGAGCATCAGATGCTTAACACCTTTAAAGAGTTTCGAGGCGACTGTCATAGGTACTTCAAAAAGTACAGCAACCCCGAGAAGGCTCGTGTTAACCCACCACACCTATTGGTGGGACGTGATGAGGATTGACACTACTTCTGTGATCACTACATGAGCCATGCATTCCAAGAGCAATCACAGACGAACAAGGCTGCTAGACAGAAACAACCTTACAATCATAGCAGCAGGTCAAAGTCATTTCTACAACGATAAAACGGGCTCGCTGAGAAAAGAGGGGAGCCAGTCGACCGTGTGGAGTTGTTTCGGCAAACATGTGTTCAAATTCGTGTCCCAGGCTGTGGAGGATGCGCATTACAAACGTCGAGAATATGGTGCAAATGTCACATCGGGGATAGTTATTTCCGACGCATGGAAAACATCAGATATAAACACATCGGGAGTAGTTATTTCGATGCATAGATGA

Coding sequence (CDS)

ATGCATTCCAAGAGCAATCACAGACGAACAAGGCTGCTAGACAGAAACAACCTTACAATCATAGCAGCAGGTCAAAGTCATTTCTACAACGATAAAACGGGCTCGCTGAGAAAAGAGGGGAGCCAGTCGACCGTGTGGAGTTGTTTCGGCAAACATGTGTTCAAATTCGTGTCCCAGGCTGTGGAGGATGCGCATTACAAACGTCGAGAATATGGTGCAAATGTCACATCGGGGATAGTTATTTCCGACGCATGGAAAACATCAGATATAAACACATCGGGAGTAGTTATTTCGATGCATAGATGA

Protein sequence

MHSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFKFVSQAVEDAHYKRREYGANVTSGIVISDAWKTSDINTSGVVISMHR
Homology
BLAST of MELO3C035130 vs. NCBI nr
Match: KAA0042261.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 5   SNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFKFVSQAVEDA 64
           SNH RTRLLDR++LT+I AGQ+ FYND T SLRK+GS STVWSCF KH   FVSQA +DA
Sbjct: 161 SNHGRTRLLDRSSLTMIVAGQNRFYNDNTSSLRKKGSWSTVWSCFEKHT--FVSQAADDA 220

Query: 65  HYKRREYGANVTSGIVISD 84
           H++    G+   S   I D
Sbjct: 221 HFQPTPEGSQPLSRDEICD 237

BLAST of MELO3C035130 vs. NCBI nr
Match: KAA0037427.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK00219.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 2   HSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFKFVSQAV 61
           + + NH RTRLLD+++LTIIAAGQS FY D T  L KEGS+STVWSCF KH+  FV+QA 
Sbjct: 264 YHRINHGRTRLLDKSSLTIIAAGQSRFYKDNTSLLSKEGSRSTVWSCFEKHM--FVTQAA 323

Query: 62  EDAHY--KRREYGANVTSGIVISDAWKTSDINTSGV---VISMH 101
           EDAH   +R  Y   +  G        TSD+    +   V+S H
Sbjct: 324 EDAHVMGRRPGYSKGLGWGPKTKARKTTSDVENDDIENYVLSTH 365

BLAST of MELO3C035130 vs. NCBI nr
Match: KAA0050386.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03398.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   SNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFK 56
           SNHRRTRLLDR++LTII AG SHFYND T SLR++GS+S VW+CFGKH F+
Sbjct: 277 SNHRRTRLLDRSSLTIIVAGPSHFYNDNTSSLREKGSRSIVWNCFGKHTFE 327

BLAST of MELO3C035130 vs. NCBI nr
Match: KAA0032152.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK14397.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 2   HSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVF 55
           H  SNH RTRLLDR++ TIIA GQSHFYND   SLRK+ S+ST+WSCFGKH F
Sbjct: 219 HQTSNHERTRLLDRSSFTIIAEGQSHFYNDSMSSLRKKESRSTIWSCFGKHTF 271

BLAST of MELO3C035130 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MHSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFK 56
          +HS+SNHRRTRLLDR++LTII AG SHFYND   SL++EGS+S VW+C  KH F+
Sbjct: 14 VHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFE 68

BLAST of MELO3C035130 vs. ExPASy TrEMBL
Match: A0A5A7TL03 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00440 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.7e-16
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 5   SNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFKFVSQAVEDA 64
           SNH RTRLLDR++LT+I AGQ+ FYND T SLRK+GS STVWSCF KH   FVSQA +DA
Sbjct: 161 SNHGRTRLLDRSSLTMIVAGQNRFYNDNTSSLRKKGSWSTVWSCFEKHT--FVSQAADDA 220

Query: 65  HYKRREYGANVTSGIVISD 84
           H++    G+   S   I D
Sbjct: 221 HFQPTPEGSQPLSRDEICD 237

BLAST of MELO3C035130 vs. ExPASy TrEMBL
Match: A0A5A7T787 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00110 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.6e-15
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 2   HSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFKFVSQAV 61
           + + NH RTRLLD+++LTIIAAGQS FY D T  L KEGS+STVWSCF KH+  FV+QA 
Sbjct: 264 YHRINHGRTRLLDKSSLTIIAAGQSRFYKDNTSLLSKEGSRSTVWSCFEKHM--FVTQAA 323

Query: 62  EDAHY--KRREYGANVTSGIVISDAWKTSDINTSGV---VISMH 101
           EDAH   +R  Y   +  G        TSD+    +   V+S H
Sbjct: 324 EDAHVMGRRPGYSKGLGWGPKTKARKTTSDVENDDIENYVLSTH 365

BLAST of MELO3C035130 vs. ExPASy TrEMBL
Match: A0A5D3CR32 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00420 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0

Query: 2   HSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVF 55
           H  SNH RTRLLDR++ TIIA GQSHFYND   SLRK+ S+ST+WSCFGKH F
Sbjct: 219 HQTSNHERTRLLDRSSFTIIAEGQSHFYNDSMSSLRKKESRSTIWSCFGKHTF 271

BLAST of MELO3C035130 vs. ExPASy TrEMBL
Match: A0A5A7U876 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2679G00080 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 5   SNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFK 56
           SNHRRTRLLDR++LTII AG SHFYND T SLR++GS+S VW+CFGKH F+
Sbjct: 277 SNHRRTRLLDRSSLTIIVAGPSHFYNDNTSSLREKGSRSIVWNCFGKHTFE 327

BLAST of MELO3C035130 vs. ExPASy TrEMBL
Match: E5GCP2 (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-13
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MHSKSNHRRTRLLDRNNLTIIAAGQSHFYNDKTGSLRKEGSQSTVWSCFGKHVFK 56
          +HS+SNHRRTRLLDR++LTII AG SHFYND   SL++EGS+S VW+C  KH F+
Sbjct: 14 VHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFE 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0042261.11.8e-1560.76CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0037427.12.0e-1450.00CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK00219.1 CACTA en-... [more]
KAA0050386.12.2e-1374.51CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03398.1 CACTA en-... [more]
KAA0032152.12.2e-1371.70CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK14397.1 CACTA en-... [more]
ADN34241.11.1e-1267.27NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
A0A5A7TL038.7e-1660.76CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7T7879.6e-1550.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CR321.1e-1371.70CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7U8761.1e-1374.51CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
E5GCP25.3e-1367.27NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035130.1MELO3C035130.1mRNA