Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GACACTCTGTGTAGGACTGACGTTGATCCCACAATCGTTGAAAGACCGATTGTGCGTCATGTCACTGACGACTTCATTGACCATGTGGATGAACAATTGTCACATGCAAGCGACGACGACGAATTATAGTGACAAACCACGTACCCACATATTTATGTAGTTTATATATTTTGATTCTAACTATATGTTCGTATTTGCTTATTGAATGTTTGTTTTCTATGTCCACAGGCATTATGTTGTCATACCCATGAAATAATATTCTCGAGACGAACGATATGTTCCTTGAATTTGAGAACGATTTAGATAACCTTGCGGGAGGATCATCGTTGGTGGGCGACAATTCGGGTGAGTCTAATAATTTCCTACATTTTAACTTAGGATTATTTTATGATTTTTCTCTAACATTATATGTTATTATAATTTATTGAGCAGGGTCGTCTACTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGTGCAGTCTCGACTCTTAGAGTTGGAGCGCTACGTTGTAGTCAATGGGTGCATTTCGATGACGATCGCCCATGGAGCGGAGAAGCATATTTCTCCACACGTCGTTCGCTTCAGCCAAGCGATAGGCGTGTGCGTACGAAAGACATTTCCTGTCAGCTGCCTTAAGTGGGTGGACGTTGGCAGAGAATACATTGAGGTCATCAAGGGCGACCTCCAGGTAATTAAGTTTCACTACACATTTATGATATCGTTTGAAACATATCTAAGTTAACCAATCTAATGTGTTATTTTTGTAATGTGTAGCGATTTTTTGTGCTTGATTTCAATGATCAAGAAAATAATAGGTTTGTTGAGCATCAGACGCTCAACACCTTTAAAGAGTTTCGGGCTGACTGTCACAGACACTTCAAAATGTACAGCGACCCCAAGGAGGCTCATACTAACCCACCCAACATATTGGTGGGACGTGATGAGGATTGACACTTCCTCTGCGACCACTACATGAGCCGTGCAATCCAGGTGAACAATTGAACCATTTTTCATGATTAATTATGATTCAACTTT
mRNA sequence
GACACTCTGTGTAGGACTGACGTTGATCCCACAATCGTTGAAAGACCGATTGTGCGTCATGTCACTGACGACTTCATTGACCATGTGGATGAACAATTGTCACATGCAAGCGACGACGACGAATTATAGTGACAAACCACGCATTATGTTGTCATACCCATGAAATAATATTCTCGAGACGAACGATATGTTCCTTGAATTTGAGAACGATTTAGATAACCTTGCGGGAGGATCATCGTTGGTGGGCGACAATTCGGGGTCGTCTACTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGTGCAGTCTCGACTCTTAGAGTTGGAGCGCTACGTTGTAGTCAATGGGTGCATTTCGATGACGATCGCCCATGGAGCGGAGAAGCATATTTCTCCACACGTCGTTCGCTTCAGCCAAGCGATAGGCGTGTGCGTACGAAAGACATTTCCTGTCAGCTGCCTTAAGTGGGTGGACGTTGGCAGAGAATACATTGAGGTCATCAAGGGCGACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGAAAATAATAGGTTTGTTGAGCATCAGACGCTCAACACCTTTAAAGAGTTTCGGGCTGACTGTCACAGACACTTCAAAATGTACAGCGACCCCAAGGAGGCTCATACTAACCCACCCAACATATTGGTGGGACGTGATGAGGATTGACACTTCCTCTGCGACCACTACATGAGCCGTGCAATCCAGGTGAACAATTGAACCATTTTTCATGATTAATTATGATTCAACTTT
Coding sequence (CDS)
ATGTTCCTTGAATTTGAGAACGATTTAGATAACCTTGCGGGAGGATCATCGTTGGTGGGCGACAATTCGGGGTCGTCTACTCAACCACCTGCGACTCCGACTCCTAGGAGACGTGTGCAGTCTCGACTCTTAGAGTTGGAGCGCTACGTTGTAGTCAATGGGTGCATTTCGATGACGATCGCCCATGGAGCGGAGAAGCATATTTCTCCACACGTCGTTCGCTTCAGCCAAGCGATAGGCGTGTGCGTACGAAAGACATTTCCTGTCAGCTGCCTTAAGTGGGTGGACGTTGGCAGAGAATACATTGAGGTCATCAAGGGCGACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGAAAATAATAGGTTTGTTGAGCATCAGACGCTCAACACCTTTAAAGAGTTTCGGGCTGACTGTCACAGACACTTCAAAATGTACAGCGACCCCAAGGAGGCTCATACTAACCCACCCAACATATTGGTGGGACGTGATGAGGATTGA
Protein sequence
MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTIAHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED
Homology
BLAST of MELO3C035092.jh1 vs. NCBI nr
Match:
TYK24037.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 333 bits (855), Expect = 3.74e-110
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVN CI MTI
Sbjct: 362 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNECILMTI 421
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
AHGAEKHISPHV+RFSQAI VCVRK FPVSCLKWVDVGREYIEVIKG+LQRFFVLDFNDQ
Sbjct: 422 AHGAEKHISPHVIRFSQAISVCVRKIFPVSCLKWVDVGREYIEVIKGNLQRFFVLDFNDQ 481
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
ENNRFVEHQTLNTFK FRADCHRHFKMYSDPKEA TNPPNILVGRDED
Sbjct: 482 ENNRFVEHQTLNTFKGFRADCHRHFKMYSDPKEARTNPPNILVGRDED 529
BLAST of MELO3C035092.jh1 vs. NCBI nr
Match:
KAA0061893.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 329 bits (843), Expect = 1.11e-107
Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNS-GSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMT 60
MFLEFENDLDNLAGGSSLVGDNS GSSTQPPATPTPRRRVQSRLLELERYVVVN CI MT
Sbjct: 415 MFLEFENDLDNLAGGSSLVGDNSAGSSTQPPATPTPRRRVQSRLLELERYVVVNECILMT 474
Query: 61 IAHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFND 120
IAHGAEKHISPHV+RFSQAI VCVRK FPVSCLKWVDVGREYIEVIKG+LQRFFVLDFND
Sbjct: 475 IAHGAEKHISPHVIRFSQAISVCVRKIFPVSCLKWVDVGREYIEVIKGNLQRFFVLDFND 534
Query: 121 QENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
QENNRFVEHQTLNTFK FRADCHRHFKMYSDPKEA TNPPNILVGRDED
Sbjct: 535 QENNRFVEHQTLNTFKGFRADCHRHFKMYSDPKEARTNPPNILVGRDED 583
BLAST of MELO3C035092.jh1 vs. NCBI nr
Match:
KAA0056616.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK24300.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 283 bits (723), Expect = 1.41e-93
Identity = 133/168 (79.17%), Postives = 145/168 (86.31%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE+DLDN+AGGSS VGDN+ S+ ATPTPRRR QSRLLELER+V +NGCI MTI
Sbjct: 6 MFLQFEDDLDNIAGGSSSVGDNTAESSSQQATPTPRRRAQSRLLELERHVAINGCIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISP+ V FSQAIGVCVRKTFPV CLKWVDVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ + TFKEF+ DCHRHFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 173
BLAST of MELO3C035092.jh1 vs. NCBI nr
Match:
ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])
HSP 1 Score: 281 bits (719), Expect = 5.53e-93
Identity = 135/168 (80.36%), Postives = 147/168 (87.50%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE+DLDN+AGGSS VGDN+ SS+Q ATPTPRRR QSRLLELER+V +NGCI MTI
Sbjct: 6 MFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGCIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISP+ V FSQAIGVCVRKTFPV CLKWVDVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ + TFKEF+ DCHRHFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172
BLAST of MELO3C035092.jh1 vs. NCBI nr
Match:
TYK16780.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 283 bits (725), Expect = 1.23e-92
Identity = 137/168 (81.55%), Postives = 146/168 (86.90%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE DLDN+AGGSS VGDN+GSS+Q TPTPRRR QSRLLELER+V +NG I MTI
Sbjct: 6 MFLQFEEDLDNIAGGSSSVGDNTGSSSQQ-TTPTPRRRAQSRLLELERHVAINGRIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISPH VRFSQAIGVCVRKTFPV CLKW DVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ L TFKEFRADCH+HFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 172
BLAST of MELO3C035092.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DKB3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001390 PE=4 SV=1)
HSP 1 Score: 333 bits (855), Expect = 1.81e-110
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVN CI MTI
Sbjct: 362 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNECILMTI 421
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
AHGAEKHISPHV+RFSQAI VCVRK FPVSCLKWVDVGREYIEVIKG+LQRFFVLDFNDQ
Sbjct: 422 AHGAEKHISPHVIRFSQAISVCVRKIFPVSCLKWVDVGREYIEVIKGNLQRFFVLDFNDQ 481
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
ENNRFVEHQTLNTFK FRADCHRHFKMYSDPKEA TNPPNILVGRDED
Sbjct: 482 ENNRFVEHQTLNTFKGFRADCHRHFKMYSDPKEARTNPPNILVGRDED 529
BLAST of MELO3C035092.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7V156 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001430 PE=4 SV=1)
HSP 1 Score: 329 bits (843), Expect = 5.39e-108
Identity = 160/169 (94.67%), Postives = 162/169 (95.86%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNS-GSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMT 60
MFLEFENDLDNLAGGSSLVGDNS GSSTQPPATPTPRRRVQSRLLELERYVVVN CI MT
Sbjct: 415 MFLEFENDLDNLAGGSSLVGDNSAGSSTQPPATPTPRRRVQSRLLELERYVVVNECILMT 474
Query: 61 IAHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFND 120
IAHGAEKHISPHV+RFSQAI VCVRK FPVSCLKWVDVGREYIEVIKG+LQRFFVLDFND
Sbjct: 475 IAHGAEKHISPHVIRFSQAISVCVRKIFPVSCLKWVDVGREYIEVIKGNLQRFFVLDFND 534
Query: 121 QENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
QENNRFVEHQTLNTFK FRADCHRHFKMYSDPKEA TNPPNILVGRDED
Sbjct: 535 QENNRFVEHQTLNTFKGFRADCHRHFKMYSDPKEARTNPPNILVGRDED 583
BLAST of MELO3C035092.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UQN2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00680 PE=4 SV=1)
HSP 1 Score: 283 bits (723), Expect = 6.82e-94
Identity = 133/168 (79.17%), Postives = 145/168 (86.31%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE+DLDN+AGGSS VGDN+ S+ ATPTPRRR QSRLLELER+V +NGCI MTI
Sbjct: 6 MFLQFEDDLDNIAGGSSSVGDNTAESSSQQATPTPRRRAQSRLLELERHVAINGCIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISP+ V FSQAIGVCVRKTFPV CLKWVDVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ + TFKEF+ DCHRHFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 173
BLAST of MELO3C035092.jh1 vs. ExPASy TrEMBL
Match:
E5GC72 (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 281 bits (719), Expect = 2.68e-93
Identity = 135/168 (80.36%), Postives = 147/168 (87.50%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE+DLDN+AGGSS VGDN+ SS+Q ATPTPRRR QSRLLELER+V +NGCI MTI
Sbjct: 6 MFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGCIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISP+ V FSQAIGVCVRKTFPV CLKWVDVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ + TFKEF+ DCHRHFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172
BLAST of MELO3C035092.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3CZJ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00390 PE=4 SV=1)
HSP 1 Score: 283 bits (725), Expect = 5.93e-93
Identity = 137/168 (81.55%), Postives = 146/168 (86.90%), Query Frame = 0
Query: 1 MFLEFENDLDNLAGGSSLVGDNSGSSTQPPATPTPRRRVQSRLLELERYVVVNGCISMTI 60
MFL+FE DLDN+AGGSS VGDN+GSS+Q TPTPRRR QSRLLELER+V +NG I MTI
Sbjct: 6 MFLQFEEDLDNIAGGSSSVGDNTGSSSQQ-TTPTPRRRAQSRLLELERHVAINGRIPMTI 65
Query: 61 AHGAEKHISPHVVRFSQAIGVCVRKTFPVSCLKWVDVGREYIEVIKGDLQRFFVLDFNDQ 120
A GAEK ISPH VRFSQAIGVCVRKTFPV CLKW DVGREYIEV+KGDLQRFFVLDFNDQ
Sbjct: 66 APGAEKPISPHAVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDQ 125
Query: 121 ENNRFVEHQTLNTFKEFRADCHRHFKMYSDPKEAHTNPPNILVGRDED 168
NRFVEHQ L TFKEFRADCH+HFK YSDP+EA NPPN LVGRDED
Sbjct: 126 AMNRFVEHQMLTTFKEFRADCHKHFKKYSDPEEARANPPNALVGRDED 172
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK24037.1 | 3.74e-110 | 95.24 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0061893.1 | 1.11e-107 | 94.67 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0056616.1 | 1.41e-93 | 79.17 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK24300.1 CACTA en-... | [more] |
| ADN34071.1 | 5.53e-93 | 80.36 | CACTA en-spm transposon protein [Cucumis melo subsp. melo] | [more] |
| TYK16780.1 | 1.23e-92 | 81.55 | CACTA en-spm transposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DKB3 | 1.81e-110 | 95.24 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7V156 | 5.39e-108 | 94.67 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5A7UQN2 | 6.82e-94 | 79.17 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| E5GC72 | 2.68e-93 | 80.36 | CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3CZJ1 | 5.93e-93 | 81.55 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
