MELO3C035082 (gene) Melon (DHL92) v4

Overview
NameMELO3C035082
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Locationchr11: 19465138 .. 19468460 (+)
RNA-Seq ExpressionMELO3C035082
SyntenyMELO3C035082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCTCCCTCGCCGTCGTTCTTCCATTTTCAGTAAGTTTCAAACCATTAAGATTTTAGTTTATATTTTAGTTTCAAACTAATGATAAATCTACAACTTATATTCAATAGAGAACGAGGGATATAATCACAAGTCGTTTAGTTTGCACAGGTCGTAAGTGCACTATGTTTCATTAGGTCACAAATAGGCATTAGCCATTCATTCAACTGAAAAGAAAAAGAATGAAGAAAATGAGATGTTATTGTATGGACATTTCAAATCTAGACATTGGGTTTTGTTATATGTATGTTGATGGTTGTTTTGTTGTATGTATGTTAATGCTTTTGAATGTGTATTGATGCTTTTGAATGTATGTTGATGATTGTTCTGTTGTATGTATGTTGATGCTTTTGAATGTATATTGATGGTTGTTCTGTTATTTCCTACAAATGTTTGTTTTGTTGTATTGATATCATTGTTGTGTATTTCAACATTATGTTCAATGGAGAAACTCAAACAGAGTAAGGGAAGTTAAACATTGTTATGTTCGTTTGATCATAGAGACATGGGCAGCATGTGTAAAGAGGGTAGTTGGACATTATTACAAGCCGCTTGTCTGGAGAAACATGAGGTTGCTTAAAACAGAAAGAACCATAACTCTGGTGGTTCAGAAAATTCATTAGAAAGAGATGAGCATAAAATGACAAGATCGAGAACCGAACAGGTAAGTCATAGAAAGTTCCTTACTCGTAAGGAACTTTCTATGACTTACCTGTTCGGCTCTCGATCTTATCATTTTCTGCAACTCTCTTCCCAATCTATTTTTTGAAACCGCCATAGTAAGGGTTGCTTCTGTTTGAAGAAACCTTGTGTTTCTCTTGACATAACTCGTAATAATGTTAAACTTCCCTGTAACGCCCCAAAATTTAAGGTATTTTATTTTGCTGGTCTTAAGATTAAATTTTTGTAATTTTGGGTGTTACTTTGTTAATTTATTTGATTTATGAAAATTGGATTTTTCTAGATATTAGGAAAATATCTAATTGTTGTGGTGTGGGAGTTCATGATTTATTTGGTTGTATTTGAGAAAAATTGGATTAATTATATTTGGTTGTATAATTATATAAATTTTGTTGGTAAGGTAATTATATTATGTGGATATTATAATTAGATAAGGGTATTTATTTATTTAAAGATAAAGATGATTGGTTTAGAGAGAGAGAGAAATTTAAGTTTAAAAAGAAGATTTGATGGGTTTTAAATGAAGTGAGAGAAGATTTGTTTGGTTAATTGGGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGATTATTATTATTAATTGACCTCGGGAACATCAACCATCTCCTTCATTGAGAAAAGAAAAGGAAACCCTAATTTCTCCTCAACTGTAGTCGTCGCCATCGCTCGACTCACCGTCGATCGCCGCAAGGAGCACGAGCCGACTGACCGTCCTCTGCACTGTGTGTTTTCGACCAATCGATCGCCCGACACGACCTGAGCATCCGCACGTCACGACACTTTGCGTTGCACCGTCGTTCGCCGTGCAGCAGCTCCATCAACCAACCGTTCGGGCAACACCGTCGTTCACCGTGCAACACCGTCGTTCGCCGTGCAACAGCGCCGTCAATGGGCCATCTTTGGTCGACGATCGTCGCATAGCCGACCTGTCTCCAAGCTGCCTTCTGCCTTTTAGCTGAGCCGCCAAGCTTTTTGTGAGCCACAAGCCTGTTTTTGGGTCTTTTTTACCTGTTTTGGTAAGTTTTGATTAGGTTTTGGTATGTCTAACTTATGTCCAACTAAGTTTAATTTTTGGACCTAAATAATTTAATTTTTGGATTAAATTAAATTATTATTTATCCTAAATGACAAGTTGGACCAATTGGAGTTCGGGTTGTGGAACTCCTTCTAGTTAAAAAAAATTGTTGCAACCTTGATATTGGTTAAGCTGATTCAACTGGAGTTTTTGGACCTTTATTTTCCTTGAGGGTCAAGTTATTAATTGGTGTTTCTAACTATTTAGGACTTCGTTGCTTGAAAAGTGTGTTTTGCTGTTAAAATTCAACCAAGCTAATCTTCAGGTAAGATATTCTACTACTAGACCCTCGAGTTTAATTTAAAGAGACCGCATGTATGAATGGTTATGTACTGATGATAGCTAGTTACAGAACTTGAAGTTACAAATAGAAACTGATATTGGAATTTTGACTGTGGGATGACTATATGTTAGAGTTGATAATGCATTGATGTGATCACTTACGTTTTATTGATACAGTATTGTGATTGAGGATGATATGACATGATATGATAGGATATATATGGTATGACATGTTATGCGTGATATGTTGCGATGTGATGTGATTTGATGATGTGTTATATGCATGCTATGGATAGGGTGTATGTTAGCTTTACCTATTAGGGTCGTACCCGCATGAGTGTTCTTCGGGATCACCACTCTTTTTGACGACTGTGTAATCCGACAGGATCACCAATCTGACTTTGACATTGACACAGACGTGATTTGAGAGATCTGACGGGACCGTTAACACTTATGACTGCGTAGTCGAACGAGACCACTAGTCTGACATTGACATTAACATAGACATGATTTGAGTGATTCGACGGGATCACTTACAGCCCGATCGTCTTAGGTGTTCCCTTGGGTTCACCAAAGACCAGCTTGTTTCTACGAGACCACAGATTGCACGTGTTCGGGAACGTGCCAGTTCAGAGGTACCACTCTATAGGACTCTAATATGAAGTTAACAGGCACCAAGCGGGACTAGTAGTGGGTCCCTTATTGAGTATTTTTATACTCACTCTTTCCATTTCTATTTTTCAGGCAGAGGCAAAGGTAAGAGCAAAGGCAAGCTGGCGAATGACCAGAAGTGACCGTAGCGAGCCATAGGGATACGTTTGCTTCCGCTTACGTCATGTGTCAGATTTCAGAGTTGATATTTCCTTTCATTTTATTCTATTTTATTTATTTCTTTGTTTTTCTTTCCCTTTAAAACTAGTAGGGCCTGAGATAGGATTTGTTTTAATTTATTTCCGTACATTCTATTTATGATTTTAACAACAATTCGCAGTTTTGTTTTATTTTCTATTTACTTTAAATAAATTTTAATTCTTTTCTTTTAAAGTAAAGTTCTCAACTTGGGTCTTTACATTCCCTCTTTGCACATTCTGCTTATGTTCCTATGATCATACTAGCTACATGATGTTGAGGCAATGTGCAAAAGTTGAGAAACTGGCGTCGGCGCTTTGA

mRNA sequence

ATGACGTCTCCCTCGCCGTCGTTCTTCCATTTTCAAAAGAACCATAACTCTGGTGGTTCAGAAAATTCATTAGAAAGAGATGAGCATAAAATGACAAGATCGAGAACCGAACAGAAACCTTGTGTTTCTCTTGACATAACTCGTAATAATGTTAAACTTCCCTGTAACGCCCCAAAATTTAAGTCGTCGCCATCGCTCGACTCACCGTCGATCGCCGCAAGGAGCACGAGCCGACTGACCGTCCTCTGCACTGTGTGTTTTCGACCAATCGATCGCCCGACACGACCTGAGCATCCGCACGTCACGACACTTTGCGTTGCACCGTCGTTCGCCGTGCAGCAGCTCCATCAACCAACCGTTCGGGCAACACCGTCGTTCACCGTGCAACACCGTCGTTCGCCGTGCAACAGCGCCGTCAATGGGCCATCTTTGGTCGACGATCGTCGCATAGCCGACCTGACTTCGTTGCTTGAAAAGTGTGTTTTGCTGTTAAAATTCAACCAAGCTAATCTTCAGCCCGATCGTCTTAGGTGTTCCCTTGGGTTCACCAAAGACCAGCTTGTTTCTACGAGACCACAGATTGCACGTGTTCGGGAACGTGCCAGTTCAGAGGCAGAGGCAAAGGTAAGAGCAAAGGCAAGCTGGCGAATGACCAGAATAAAGTTCTCAACTTGGGTCTTTACATTCCCTCTTTGCACATTCTGCTTATGTTCCTATGATCATACTAGCTACATGATGTTGAGGCAATGTGCAAAAGTTGAGAAACTGGCGTCGGCGCTTTGA

Coding sequence (CDS)

ATGACGTCTCCCTCGCCGTCGTTCTTCCATTTTCAAAAGAACCATAACTCTGGTGGTTCAGAAAATTCATTAGAAAGAGATGAGCATAAAATGACAAGATCGAGAACCGAACAGAAACCTTGTGTTTCTCTTGACATAACTCGTAATAATGTTAAACTTCCCTGTAACGCCCCAAAATTTAAGTCGTCGCCATCGCTCGACTCACCGTCGATCGCCGCAAGGAGCACGAGCCGACTGACCGTCCTCTGCACTGTGTGTTTTCGACCAATCGATCGCCCGACACGACCTGAGCATCCGCACGTCACGACACTTTGCGTTGCACCGTCGTTCGCCGTGCAGCAGCTCCATCAACCAACCGTTCGGGCAACACCGTCGTTCACCGTGCAACACCGTCGTTCGCCGTGCAACAGCGCCGTCAATGGGCCATCTTTGGTCGACGATCGTCGCATAGCCGACCTGACTTCGTTGCTTGAAAAGTGTGTTTTGCTGTTAAAATTCAACCAAGCTAATCTTCAGCCCGATCGTCTTAGGTGTTCCCTTGGGTTCACCAAAGACCAGCTTGTTTCTACGAGACCACAGATTGCACGTGTTCGGGAACGTGCCAGTTCAGAGGCAGAGGCAAAGGTAAGAGCAAAGGCAAGCTGGCGAATGACCAGAATAAAGTTCTCAACTTGGGTCTTTACATTCCCTCTTTGCACATTCTGCTTATGTTCCTATGATCATACTAGCTACATGATGTTGAGGCAATGTGCAAAAGTTGAGAAACTGGCGTCGGCGCTTTGA

Protein sequence

MTSPSPSFFHFQKNHNSGGSENSLERDEHKMTRSRTEQKPCVSLDITRNNVKLPCNAPKFKSSPSLDSPSIAARSTSRLTVLCTVCFRPIDRPTRPEHPHVTTLCVAPSFAVQQLHQPTVRATPSFTVQHRRSPCNSAVNGPSLVDDRRIADLTSLLEKCVLLLKFNQANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTRIKFSTWVFTFPLCTFCLCSYDHTSYMMLRQCAKVEKLASAL
Homology
[Close]
BLAST of MELO3C035082 vs. NCBI nr
Match: TYK30852.1 (uncharacterized protein E5676_scaffold455G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-15
Identity = 53/68 (77.94%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 154 TSLLEKCVLLLKFNQANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAE--AKVRA 213
           TSLL K VLLL F++ANLQ DRLRCS GFTKDQLV T  QI RVRE ASSE E  AKVRA
Sbjct: 150 TSLLGKRVLLLNFDRANLQSDRLRCSFGFTKDQLVPTGSQITRVREHASSEVEAVAKVRA 209

Query: 214 KASWRMTR 220
           KASWRMTR
Sbjct: 210 KASWRMTR 217

[Close]
BLAST of MELO3C035082 vs. NCBI nr
Match: KAA0058975.1 (hypothetical protein E6C27_scaffold98G001620 [Cucumis melo var. makuwa] >TYK11008.1 hypothetical protein E5676_scaffold874G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 152 DLTSLL--EKCVLLLKFNQANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKV 211
           DL +LL   + +LLL F++ANLQ DRL+CSLGFTKDQLV T  QIARVRERASS AEA+V
Sbjct: 24  DLGTLLLGNRDILLLVFDEANLQLDRLKCSLGFTKDQLVPTGSQIARVRERASSGAEAEV 83

Query: 212 RAKASWRMTR 220
           RAKASWRMT+
Sbjct: 84  RAKASWRMTK 93

[Close]
BLAST of MELO3C035082 vs. NCBI nr
Match: KAA0035249.1 (hypothetical protein E6C27_scaffold228G00320 [Cucumis melo var. makuwa] >TYK22404.1 hypothetical protein E5676_scaffold173G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-09
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 173 PDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
           PDRLRCS  FTKDQLV TR QIARVR+RAS  AEA+VRAK SWRMTR
Sbjct: 9   PDRLRCSFAFTKDQLVPTRSQIARVRKRASLRAEAEVRAKVSWRMTR 55

[Close]
BLAST of MELO3C035082 vs. NCBI nr
Match: KAA0066316.1 (hypothetical protein E6C27_scaffold21G003750 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-09
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 173 PDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
           PDRL CSLGFTKDQLV    QIARVRERA+S AEA+VRAKASWRM+R
Sbjct: 99  PDRLSCSLGFTKDQLVPMGSQIARVRERANSGAEAEVRAKASWRMSR 145

[Close]
BLAST of MELO3C035082 vs. NCBI nr
Match: KAA0032216.1 (uncharacterized protein E6C27_scaffold219G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-09
Identity = 70/171 (40.94%), Postives = 86/171 (50.29%), Query Frame = 0 

Query: 62  SSPSLDSPSIAARSTSRLTVLCTVCFRPIDRPTRPEHPHVTTLCVA---PSFAVQQLHQP 121
           SS   + PS A R  S+  V+C  C       T   H    ++ ++   PS  V  L QP
Sbjct: 55  SSLKPNRPSFAIRQPSQ--VVCRSCV------TVEAHAPAASVALSARYPSLFV-TLRQP 114

Query: 122 TVRA-TPSFTVQHRRSPCNSAVNGPSLVDDRR---------IADLTSLLEKCVLLLKFNQ 181
           + +A T    V+  + PC +          R+         +   TSLL K VLLL    
Sbjct: 115 SFKASTRQPRVEPCKHPCRATPTTREPQPSRQAFFKGNCYNLDIRTSLLGKRVLLL---- 174

Query: 182 ANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
            N      RC LGFTKDQLV T  QIARVRER +SEAEA+VRAKASWRMTR
Sbjct: 175 -NSIEQISRCFLGFTKDQLVPTGSQIARVRERVNSEAEAEVRAKASWRMTR 211

[Close]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match: A0A5D3E4K8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00500 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 53/68 (77.94%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 154 TSLLEKCVLLLKFNQANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAE--AKVRA 213
           TSLL K VLLL F++ANLQ DRLRCS GFTKDQLV T  QI RVRE ASSE E  AKVRA
Sbjct: 150 TSLLGKRVLLLNFDRANLQSDRLRCSFGFTKDQLVPTGSQITRVREHASSEVEAVAKVRA 209

Query: 214 KASWRMTR 220
           KASWRMTR
Sbjct: 210 KASWRMTR 217

[Close]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match: A0A5D3CII8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00460 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-15
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 152 DLTSLL--EKCVLLLKFNQANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKV 211
           DL +LL   + +LLL F++ANLQ DRL+CSLGFTKDQLV T  QIARVRERASS AEA+V
Sbjct: 24  DLGTLLLGNRDILLLVFDEANLQLDRLKCSLGFTKDQLVPTGSQIARVRERASSGAEAEV 83

Query: 212 RAKASWRMTR 220
           RAKASWRMT+
Sbjct: 84  RAKASWRMTK 93

[Close]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match: A0A5A7T1L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00350 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-10
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 173 PDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
           PDRLRCS  FTKDQLV TR QIARVR+RAS  AEA+VRAK SWRMTR
Sbjct: 9   PDRLRCSFAFTKDQLVPTRSQIARVRKRASLRAEAEVRAKVSWRMTR 55

[Close]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match: A0A5A7VIZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003750 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 173 PDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
           PDRL CSLGFTKDQLV    QIARVRERA+S AEA+VRAKASWRM+R
Sbjct: 99  PDRLSCSLGFTKDQLVPMGSQIARVRERANSGAEAEVRAKASWRMSR 145

[Close]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match: A0A5A7SQC3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00280 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 70/171 (40.94%), Postives = 86/171 (50.29%), Query Frame = 0 

Query: 62  SSPSLDSPSIAARSTSRLTVLCTVCFRPIDRPTRPEHPHVTTLCVA---PSFAVQQLHQP 121
           SS   + PS A R  S+  V+C  C       T   H    ++ ++   PS  V  L QP
Sbjct: 55  SSLKPNRPSFAIRQPSQ--VVCRSCV------TVEAHAPAASVALSARYPSLFV-TLRQP 114

Query: 122 TVRA-TPSFTVQHRRSPCNSAVNGPSLVDDRR---------IADLTSLLEKCVLLLKFNQ 181
           + +A T    V+  + PC +          R+         +   TSLL K VLLL    
Sbjct: 115 SFKASTRQPRVEPCKHPCRATPTTREPQPSRQAFFKGNCYNLDIRTSLLGKRVLLL---- 174

Query: 182 ANLQPDRLRCSLGFTKDQLVSTRPQIARVRERASSEAEAKVRAKASWRMTR 220
            N      RC LGFTKDQLV T  QIARVRER +SEAEA+VRAKASWRMTR
Sbjct: 175 -NSIEQISRCFLGFTKDQLVPTGSQIARVRERVNSEAEAEVRAKASWRMTR 211

The following BLAST results are available for this feature:
BLAST of MELO3C035082 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035082 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK30852.13.5e-1577.94uncharacterized protein E5676_scaffold455G00500 [Cucumis melo var. makuwa][more]
KAA0058975.11.3e-1472.86hypothetical protein E6C27_scaffold98G001620 [Cucumis melo var. makuwa] >TYK1100... [more]
KAA0035249.11.0e-0980.85hypothetical protein E6C27_scaffold228G00320 [Cucumis melo var. makuwa] >TYK2240... [more]
KAA0066316.12.9e-0980.85hypothetical protein E6C27_scaffold21G003750 [Cucumis melo var. makuwa][more]
KAA0032216.13.8e-0940.94uncharacterized protein E6C27_scaffold219G00280 [Cucumis melo var. makuwa][more]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E4K81.7e-1577.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CII86.5e-1572.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T1L74.8e-1080.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIZ11.4e-0980.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SQC31.8e-0940.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C035082 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035082.1MELO3C035082.1mRNA