MELO3C035056 (gene) Melon (DHL92) v4

Overview
NameMELO3C035056
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr11: 17838504 .. 17842058 (+)
RNA-Seq ExpressionMELO3C035056
SyntenyMELO3C035056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCTACTATCAACCTTTGCTCCCATCATCGTCGTCCACTGTTCATTTCTTTACTTCGGCTGGCTCTAATCACATTTACTCTAGTAATATTTCACTCTTTCTCCCTTGCTCTCTTCACTTTTCTTTCCTCCCACCCCTTCTCTTTTTATTTTCTAATTTCAATTGAGGTATATTTTTTCCATATTCTGTTTTATTTATGAGTTTTTTGTTCATGAACTCAAATCCAATGAGTTCATCGTTGTTGCAGGTCAGCTCCAATGTTTTTCATTAATGCTTATTCTTTAGGTAACTTATATCAAATGTCTATTAGAAACCGTGCCATTGAATTCCTTGTTGACATTGTTTTTCTTTGGTAGACTTGATATTGAACAGTTGTAACTTTTTTCTTTTATATCGATACTTGTGTGTGTGCGTGTTAATTTCCTTGATATATAGGTATGGCTTGTTTGGTAGTTTTGAAGATGAACTCTTCAAGCTGTTGTCTGATTATTTGACTCGTTCTTGTATTGTAGGCTTCGTGAATTGAAACAGCTTGGTGAGTACTTTTGTATGTTTATTCATTTTTTTAATGATGTTTCATATTTAATTGTTAATTCTTGAATTTGAGGTCACTACATTCACAAATATGAATACTTATTTTAGGAGGTGTGCATATGATATTATCAAGCTATTTGATACTTTGATAATTGTTGGAATTTGTGTCCTAAAACTCATACTTTGTTATTTGATTCAATAAAATTTATTATTGAATGCTATATTCTTAAAACCAATAATTTTAAGGTCCCGAGGCTATTTACTAGTTTGTCATATATACTTGAACTTTATGTAGAGACATAAACATGGATTAAGTTTAAGTTAATAGCCCAAATGGTCTATAGTGTATGAATAAGGTTGGACGCCTTATTATAGATAAACACTATGGATGCGACTCACTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTAAATAGTTTGCATAAGACTGGAACCACGAAGTAGTCACTTTTAGTTGTAACACCGTAAACTATAAATTAACTATTTCATTTATGATGACCTAGGTAACTTGATCTTAATTCTTGAGCTAACTATGAACTTCTGTTCATTTGGTAGTATCCTTAGATCTGTATAGGTGAGGGCAGTTCAACATCGCTGGCTCAATAAACCTTCCATTTTAGGGGTAAGACCGAGTGGATAGCTAGGGACATAGGGTGCAAGATGGAATTCACTCCTACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAAGGACTGAATCCAAGTTTTGAACAAGAGGCCCCACCTTCTCGTTGACCCGAGAAGGATTCTGGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCAATGGGTCTTAAGGAGCAAGATGTAATCTCGGTGGTAAAACGATATTTTGACCTAGCCATGATTACGAACAACCTGTGAAGGTTCGACTTACCCATTATGGTTATATCAGGTGGACAGAAATATATATATAGTGAGCAGAGTGCAACTAAGAGTCTTTAATGGAATGACTCTTTAGTTAACGGATGTTGATTAACTTTGGTCTAAAAGAGTTTAGTCAGTAAATCTCGAATCGTTGAAGACCATGATCTATAAGTTCATTAGGTTCCCCTACTAGCTCATATGGATTCAACTAAGAACAAGTATGTTGAAGTAATTCGAATTGTTCAAATAAAGATAAGGGAGAGAAACCGACAAATATATAAGATATAAGTCAGTAGAAATAAACTTTAAGTTTTGTATTTAAATATGATTGAAATATGTATAAACATAGATTCAAATTTAAAAGCTTGAAAATTTTAGAAAAGGTCAAAGTTGTAAAAGTCAACATGTTGACTTTTAACTTTTAACTTTGACCAGATTTATATTCAAATATGATTTAAATTTTAAAAAAATGATTACGGATTCAAACTCGGGAGGTTAGAATTAGTCAAGACAGGAAAAATAGTAAAAAGTCAACAAGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTGACTTAAGTTTGTCAGATGACCAAAATGCCCCTTTGACTAATTTCTTTATTAATTAACGGTTAATGAGAAATGTGGTAGATTATTATGAATTTGAAGCCACTAAATTCATTAAAGAGTTAATGAATTGATTAGATGTTGATAAGATATGAAATAATTTATATGCAATTTGCATGTAAATTTCATATAAAACTTCTCATTACCGAATGAGAAAATGATGAGGTTTTCTCTGGAAAAACACCTAAACGATTGACTCCCATCTCTCTCTAAAATTCTCTTCGCATAACCGAGTCCCACAACTCCGTTTTGGTCCTGAGCATAGTAGGTCAACTTGGTGGTTGTCCTTGCTCGTGATTTTCAGGAAGAGAAGAAGTTCTGGACCAAAGAAGAAGTTGAGAACTACAAAGGTAAGTACATCGTTTACCTTCTTCTCTCTTCGTTTAGGTTCATCGCATGGTAGATGTATGTTAACTTCTAAATCATTTAGATGCATATAGAGTAAAGCATGATCCATTAAAATTCGCTGCTGCATGTCTAGTTTTTTTTGTTTTTCCATCAACAGTAAGGTTCTACTGAAGTCTTGTAGGTACAAAATTTATATTGAATGTATATTATTAGTTTCATATGCTTACAATCAAGTTTATATACTTTCAGGTGTGACATATATGATATAACAAGGCTTAATCTTTTTATTTCATGTTTTAACAAGGCTTTCTAAATATAAATATGTCATATTTGCAAAAATTTCATCAATTCCACCTTCGATAAAGGATTGTTGTGCGCTTGCAGGGTTATATATGGGGTAGTGTTCAATCCATAATCTTACAAATCTACACTTGGTTTAGATTGTAATGAGTTTCTATGGTTTATTCCTTTTCTTCTTTTAAAATTTTATTTTGATTAAGTAGTGTGATATTTATTGTTTTGGCAAGTCAAATGATTGCTTTATATGAAATGTTTCTTCACTCTTATAGGCTAATTTGATGCCCAAATTCTATCATTGTTATTGTATTTGTTTATTTAAAATATAACTTCAGTTTATTTCTCCATTCGATTGAGTTTGTGTGAATAGAATTTGAAACTGAAGTGTTTGGTTTGTGTTGTTGATGTTCTATAGTTTGAGCTGAAAAATTAGTGCATTAATGGATTTTGAAACTTTTTTAGTGATGTGAATGTATGGAATAGAAATGGATCAATACATCAATGCCCACGAACCTTTTTAGTTTCTTTATTTTCTTCACTGCAAATAGAGAAAGGTTGTTTGGATTGCATAATTACTTGGCTGAATTGTTAAGATTGTAATTGCAATTTGATTTTAGGTGTCACAATCAATGGCGCGTAATTTTTCTTCTAGAAATTCTAGTATTTTTCTACTACCCTACTCTTCTGAAATTTTCTTATCACTTTCCGTAATTGGAGGAGATGTGGGATCGCTGACCTGGGCTGTCTATTGGGTGGTTGTGTTTAGGATTTTTCGCGGGAAATGA

mRNA sequence

ATGTCTCTCTACTATCAACCTTTGCTCCCATCATCGTCGTCCACTGTTCATTTCTTTACTTCGGCTGGCTCTAATCACATTTACTCTAGTAACTTATATCAAATGTCTATTAGAAACCGTGCCATTGAATTCCTTGTTGACATTATAAACACTATGGATGCGACTCACTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTGAGGGCAGTTCAACATCGCTGGCTCAATAAACCTTCCATTTTAGGGGTCAACTTGGTGGTTGTCCTTGCTCGTGATTTTCAGGAAGAGAAGAAGTTCTGGACCAAAGAAGAAGTTGAGAACTACAAAGATGCATATAGAGTAAAGCATGATCCATTAAAATTCGCTGCTGCATGTCTAGTGTCACAATCAATGGCGCGTAATTTTTCTTCTAGAAATTCTAGTATTTTTCTACTACCCTACTCTTCTGAAATTTTCTTATCACTTTCCGTAATTGGAGGAGATGTGGGATCGCTGACCTGGGCTGTCTATTGGGTGGTTGTGTTTAGGATTTTTCGCGGGAAATGA

Coding sequence (CDS)

ATGTCTCTCTACTATCAACCTTTGCTCCCATCATCGTCGTCCACTGTTCATTTCTTTACTTCGGCTGGCTCTAATCACATTTACTCTAGTAACTTATATCAAATGTCTATTAGAAACCGTGCCATTGAATTCCTTGTTGACATTATAAACACTATGGATGCGACTCACTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGGGGGCATCCTATGTGAGGGCAGTTCAACATCGCTGGCTCAATAAACCTTCCATTTTAGGGGTCAACTTGGTGGTTGTCCTTGCTCGTGATTTTCAGGAAGAGAAGAAGTTCTGGACCAAAGAAGAAGTTGAGAACTACAAAGATGCATATAGAGTAAAGCATGATCCATTAAAATTCGCTGCTGCATGTCTAGTGTCACAATCAATGGCGCGTAATTTTTCTTCTAGAAATTCTAGTATTTTTCTACTACCCTACTCTTCTGAAATTTTCTTATCACTTTCCGTAATTGGAGGAGATGTGGGATCGCTGACCTGGGCTGTCTATTGGGTGGTTGTGTTTAGGATTTTTCGCGGGAAATGA

Protein sequence

MSLYYQPLLPSSSSTVHFFTSAGSNHIYSSNLYQMSIRNRAIEFLVDIINTMDATHSVVSTNDVILNRSCRDMGVGASYVRAVQHRWLNKPSILGVNLVVVLARDFQEEKKFWTKEEVENYKDAYRVKHDPLKFAAACLVSQSMARNFSSRNSSIFLLPYSSEIFLSLSVIGGDVGSLTWAVYWVVVFRIFRGK
Homology
[Close]
BLAST of MELO3C035056 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 19  FTSAGSNHIYSSNLYQMSIRNRAIEFLVDIINTMDATHSVVSTNDVILNRSCRDMGVGAS 78
           F  A +  ++ S+L+ + +R              DA  SV+STNDVILN SCRDMG GAS
Sbjct: 91  FIKALTAKVFESHLHGLGLR--------------DAARSVLSTNDVILNPSCRDMGEGAS 150

Query: 79  YVRAVQHRWLNKPSILGV 97
           YVRA QHRW NKP ILGV
Sbjct: 151 YVRAAQHRWPNKPPILGV 154

[Close]
BLAST of MELO3C035056 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 19  FTSAGSNHIYSSNLYQMSIRNRAIEFLVDIINTMDATHSVVSTNDVILNRSCRDMGVGAS 78
           F  A +  ++ S+L+ + +R              DA  SV+STNDVILN SCRDMG GAS
Sbjct: 91  FIKALTAKVFESHLHGLGLR--------------DAARSVLSTNDVILNPSCRDMGEGAS 150

Query: 79  YVRAVQHRWLNKPSILGV 97
           YVRA QHRW NKP ILGV
Sbjct: 151 YVRAAQHRWPNKPPILGV 154

The following BLAST results are available for this feature:
BLAST of MELO3C035056 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035056 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045355.13.3e-1052.56retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
BLAST of MELO3C035056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVE01.6e-1052.56Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
BLAST of MELO3C035056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035056.1MELO3C035056.1mRNA