MELO3C035053 (gene) Melon (DHL92) v4

Overview
NameMELO3C035053
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTrigger factor
Locationchr11: 17641687 .. 17643679 (+)
RNA-Seq ExpressionMELO3C035053
SyntenyMELO3C035053
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGACCTGTGCAAGTCTTTTCCCAGCTTCTTCTTCAGACACATAGCCCTTGGTGATGTACTTCTGGAAGGGTGGAAACAAAAGTCTAAAGAGGGGAATGTGCTCTCTAAACAATCCTGTTGTGGCAATGCAACCAGGGTAGAGAGAAGCAAAAGTTATTCCCGTTTCTTCATGATATCTCCTGTGGAGCTCTTGCATGGTGAGCATGTTGCATACTTTGCTATCCTTGTAGGCCTTTGCTCCATCAAACTCTCCTCCATCTATCATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATGTGTTTGTGTTACCTGGAAATCAAACACAAAGTTTGTGATACATTGAGCTTGTTTGAAATAACCTTTTTCGAGCATGTTTGACCAAAGGAGTTGGAGCGGAAAGGAATGGGCTTCAACTAAACTCTATGTTTAGTCCAAAGAATTTGTGAGCTACACAACTAGAAAAGATCAATTATATGCTTAAGAACTCCTTACGTTGTGAGCCACAACTTCATGCTCTTCAGAATTCACAACTCTACTCCTTTCTCAAAACACCCTTTAAATGCAAAACACTTTTGTAAGAACCTAGAAAGTCATTCATCTTTCCTGTTCTGGTAGTCCGTATAAATGTGATGTTGAATGCTCTCAATTAGTACCTGTGATGGAGCCTACAATTATTACACGCTTGGATGGATAATCTGATTGCTTTATGTCATCGAGCAGCAGCCGCGTGAGGAGGAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGGTCTAGATGCATAATAGTATAGTTTTCCTTAGCCACGCCTGCTGATTTTGCTGCCATTTGAGCTTTAAGGAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTTGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGGTACTCTAACTTCCTAAATGTATGTTGAATAGAACATTCATATTACAAACAAAACATTTCTACCATCTTTGGGGGTGGGGGGCGTAAAATAAAACCTGATAATTGAATACGCACATATTACCTTATTTCTGTATATGAGAGATTTTGATTTAACTTCAATATGCACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCGGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAGGAGAGTTGCTGAGAGAGCTTTCAGGAGCAGATCACATGAGATGCTTGCAAGAGAAACTATGGAATGGAAGGAGCTGAAATACTGGCATCTGTTTGTTTTGGAGATATACAATATTCTGGCTCCTATACTTGCCACGTTGGCCTCTTTCATCCAATCAGGTTCACCATTGGACTCTCTAATTTTCTTGTTGATTAAAGATCAGTTGTCTAGACTATTCTAAATACTTTGGGTCATTGTAGTGGAGGCCCAACATGGTAAGGTTGGGTCCAAATGGTCCAGTTTTGAAATATTGGGATAGCTAATTTTGAGTAAATTCAGAACTTTTTTGGAAGATCATCCTAATTAAAAATGGCCACGAATAGAAACGAACTTGCCCTTCCACAAGATATGTTCTGGTATCCAAAATAATATAAGACAACTTTCTTTACCACACTACTAAAAATTTTGCGTGGTTGCAGTAACTCATCCTTAAATCCCACGC

mRNA sequence

ATGACTGACCTGTGCAAGTCTTTTCCCAGCTTCTTCTTCAGACACATAGCCCTTGGTGATGTACTTCTGGAAGGGTGGAAACAAAAGTCTAAAGAGGGGAATGTGCTCTCTAAACAATCCTGTTGTGGCAATGCAACCAGGGTAGAGAGAAGCAAAAGTTATTCCCGTTTCTTCATGATATCTCCTGTGGAGCTCTTGCATGGTGAGCATGTTGCATACTTTGCTATCCTTGTAGGCCTTTGCTCCATCAAACTCTCCTCCATCTATCATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATCAGCCGCGTGAGGAGGAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTTGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCGGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAGGAGAGTTGCTGAGAGAGCTTTCAGGAGCAGATCACATGAGATGCTTGCAAGAGAAACTATGGAATGGAAGGAGCTGAAATACTGGCATCTGTTTGTTTTGGAGATATACAATATTCTGGCTCCTATACTTGCCACGTTGGCCTCTTTCATCCAATCAGGTTCACCATTGGACTCTCTAATTTTCTTGTTGATTAAAGATCAGTTGTCTAGACTATTCTAAATACTTTGGGTCATTGTAGTGGAGGCCCAACATGGTAAGGTTGGGTCCAAATGGTCCAGTTTTGAAATATTGGGATAGCTAATTTTGAGTAAATTCAGAACTTTTTTGGAAGATCATCCTAATTAAAAATGGCCACGAATAGAAACGAACTTGCCCTTCCACAAGATATGTTCTGGTATCCAAAATAATATAAGACAACTTTCTTTACCACACTACTAAAAATTTTGCGTGGTTGCAGTAACTCATCCTTAAATCCCACGC

Coding sequence (CDS)

ATGGTCGAGCTGTTCACACCATTCAAACCACTGGCTAAGCCTCTCAGATCACCCAAGTTTGCTTTTGGGGGCACGTTTCCAGCCAATCAGCCGCGTGAGGAGGAAGTGACCAAGGTGGTTAGTCCCAGCACTAAGTTCAAACCCTTCAGCGGTGAAAGTTGGCTCCTTTGCAGTCGGCAAATATACAGCAGCATTGCAAACAAGCACATCAAGAGGCATACCCGATCGACGGAAGCTATCCACAAATTGCCTTATACTCTCAAGCGAGGCAAGTTCCTGCATGCCATAATTATATGCCATTTTCCTGTTTCAGCTAGAGCCTTGGCCGTTGCTAGACCCAGTCCTGAGGAAGCTCCTGTGATTATAACATTTCCTTTCCTCAACGTTTTGTTTACTTCCTGTGGAGCCTGTTTGATTTCTGAGACTGATGCAGTTTGGGCTCTAACAGCTCCAACAGAAAATGGAACTTCTGAAAGGCCAGTGTTCTTCAGAACAAAGGTTCCAGCGGGATATACGTCTTTGTGGATGGAAATTTTGGGAGAAAAAGAGACAGCTTGTAGAGCCATGAGAAGAAAATAG

Protein sequence

MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEEVTKVVSPSTKFKPFSGESWLLCSRQIYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTSCGACLISETDAVWALTAPTENGTSERPVFFRTKVPAGYTSLWMEILGEKETACRAMRRK
Homology
[Close]
BLAST of MELO3C035053 vs. NCBI nr
Match: KAF1896447.1 (hypothetical protein Lal_00034145 [Lupinus albus])

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-09
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 1   MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEEVTKVVSPSTKFKPFSGESWLLCSRQ 60
           M E+F+PFKP A PL+SP+ +      +N+    +  +   P+   KP S  ++ L    
Sbjct: 156 MDEVFSPFKPPANPLKSPRSS------SNRRERRKCPRWFVPTLSSKP-SAVNFSLAMPA 215

Query: 61  IYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPV 120
            ++++A                    L+  K L AII CHFPVSARALA ARP+PEEAPV
Sbjct: 216 DFAALA-------------------VLR--KSLQAIITCHFPVSARALAAARPNPEEAPV 275

Query: 121 IITFPFLNVLFTSCGACLISETDAVWALTAP 152
             T PFL V F   GA  + +   V A ++P
Sbjct: 276 TTTLPFLKV-FLPSGATFV-KAGVVVATSSP 276

[Close]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match: A0A6A5PF86 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 0 

Query: 1   MVELFTPFKPLAKPLRSPKFAFGGTFPANQPREEEVTKVVSPSTKFKPFSGESWLLCSRQ 60
           M E+F+PFKP A PL+SP+ +      +N+    +  +   P+   KP S  ++ L    
Sbjct: 156 MDEVFSPFKPPANPLKSPRSS------SNRRERRKCPRWFVPTLSSKP-SAVNFSLAMPA 215

Query: 61  IYSSIANKHIKRHTRSTEAIHKLPYTLKRGKFLHAIIICHFPVSARALAVARPSPEEAPV 120
            ++++A                    L+  K L AII CHFPVSARALA ARP+PEEAPV
Sbjct: 216 DFAALA-------------------VLR--KSLQAIITCHFPVSARALAAARPNPEEAPV 275

Query: 121 IITFPFLNVLFTSCGACLISETDAVWALTAP 152
             T PFL V F   GA  + +   V A ++P
Sbjct: 276 TTTLPFLKV-FLPSGATFV-KAGVVVATSSP 276

[Close]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match: A0A7C8ZVV3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTS 134
           K  HA+I CH PVSARALA ARP PEEAPV +T PFL+V F S
Sbjct: 13  KSRHAMITCHLPVSARALAAARPKPEEAPVTMTLPFLSVFFCS 55

[Close]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match: A0A7C9D475 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.9e-05
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNVLFTSCGACLI-SETDAVWAL 149
           K L A+I    P  ARALAVARPSP++APVI T PFL+V F+S  A LI  +   VWAL
Sbjct: 13  KSLQAMITSQSPCVARALAVARPSPDDAPVITTVPFLSVFFSSGVARLIDGDVVTVWAL 71

[Close]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match: A0A5A7R849 (Trigger factor OS=Striga asiatica OX=4170 GN=STAS_31439 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 91  KFLHAIIICHFPVSARALAVARPSPEEAPVIITFPFLNV 130
           K   A++ CH P+SARALAVARP P+EAPVIIT PF  V
Sbjct: 13  KSRQAMMTCHLPLSARALAVARPRPDEAPVIITVPFRKV 51

The following BLAST results are available for this feature:
BLAST of MELO3C035053 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C035053 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1896447.12.1e-0937.09hypothetical protein Lal_00034145 [Lupinus albus][more]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5PF861.0e-0937.09Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034145 PE=4 SV=1[more]
A0A7C8ZVV31.4e-0669.77Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C9D4755.9e-0557.63Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A5A7R8495.0e-0466.67Trigger factor OS=Striga asiatica OX=4170 GN=STAS_31439 PE=4 SV=1[more]
BLAST of MELO3C035053 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035053.1MELO3C035053.1mRNA