MELO3C034996 (gene) Melon (DHL92) v4

Overview
NameMELO3C034996
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRHOMBOID-like protein 12
Locationchr11: 13682227 .. 13683229 (-)
RNA-Seq ExpressionMELO3C034996
SyntenyMELO3C034996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGGTAAGTGTGACTAATTAATCTTCAGATTTGGAACGAAAATTGCACTAGATTAATTATGTTTGTTTTTTGTTTTTTCAGATCTATTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGGTTTATGATCAAATCAATATTTTCATTTCTAGTATTTTCCTTTTCTATTATTTTCCTTGTTTGTATTATTGGGAGTATATAATTTTGGAACTCTCTATTCTGATTATTCAAGTTATTATTCAATAATATTGTACAAGATTAACAGAAAATAGATTCTCAGGATATTTGGAATGTGGTTGCTTTTTGGTTGAAAGACTTTTGAAAAAAACTTTTGTAAGAACTTGCTTTGCTTCAACACATATTGATAAACGAACATTATGAGTTTCTTGGATGCTAATTTAGAGTTCATACTGGATTTGGAGTAATACATTTTGATTCTGGTTTTGATAAGGTGAGCTTGAGATGGCTTTTGGATGTGAAATGTGCTTAAACCTGTTAAAAGATTTTTTTCCCTCAAAATTTCGATTTGTTGTGGATATAGTGTGCTAAGTGGTTAAATAGTCAAAAGTATTTTAAAAAAACTCTCATTTTCACCAAGGAATTGCTCGTCCCAAGCTCATACTTAGTCTACTTGTGAACTATAATCCAATCCATTCTGTTTGTCTCGTGAGTTTATATGTTACTTATAACGTTAGCTTTACTGTTTAGCCTCGGTTTTTCCAGAATATGATAATACCCCATTAGTGTTAAAACTGACCTTTTCCCCAGCCTTTTTAGCATTGATACTTGATCTTATCTGTTTTGCCTTTAACAGATCGGTAGTGTATTTGGTTCTGAGTTTTTGTTGAAATTGTATCTGGCTGGAGCAATTGGTGGGTCAGCATTTTACTTGGCGCATCATCTATTCCAAGCATCGTCCTCAAAGGTA

mRNA sequence

ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGATCTATTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGATCGGTAGTGTATTTGGTTCTGAGTTTTTGTTGAAATTGTATCTGGCTGGAGCAATTGGTGGGTCAGCATTTTACTTGGCGCATCATCTATTCCAAGCATCGTCCTCAAAGGTA

Coding sequence (CDS)

ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGATCTATTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGATCGGTAGTGTATTTGGTTCTGAGTTTTTGTTGAAATTGTATCTGGCTGGAGCAATTGGTGGGTCAGCATTTTACTTGGCGCATCATCTATTCCAAGCATCGTCCTCAAAGGTA

Protein sequence

MASDSFIDKNVVFKRLKAKSENKIYFDCNAKREAVKIIRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSKV
Homology
[Close]
BLAST of MELO3C034996 vs. ExPASy Swiss-Prot
Match: Q9FZ81 (RHOMBOID-like protein 12, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL12 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-05
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 44  FGSEFLLKLYLAGAIGGSAFYLAHHLFQASSS 76
           FG +FLLKLYLAGA+GGS FYL HH + A++S
Sbjct: 208 FGPQFLLKLYLAGALGGSVFYLIHHAYMAATS 239

[Close]
BLAST of MELO3C034996 vs. ExPASy Swiss-Prot
Match: Q9FIQ0 (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana OX=3702 GN=AGD9 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.6e-05
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          MA+++  DKNVVF++LK+KSENK+ FDC+AK
Sbjct: 1  MATENLTDKNVVFRKLKSKSENKVCFDCSAK 31

[Close]
BLAST of MELO3C034996 vs. ExPASy Swiss-Prot
Match: O82171 (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana OX=3702 GN=AGD10 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKI FDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C034996 vs. ExPASy Swiss-Prot
Match: Q8H100 (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana OX=3702 GN=AGD8 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 18/30 (60.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 2  ASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          ++D+  DKN+VF++LK+KSENK+ FDC+AK
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAK 34

[Close]
BLAST of MELO3C034996 vs. NCBI nr
Match: KAA0051345.1 (RHOMBOID-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAKREAVKIIRIGSVFGSEFLLKLYLAGAIGG 60
          MASDSFIDKNVVFKRLKAKSENK                IGSVFGSEFLLKLYLAGAIGG
Sbjct: 1  MASDSFIDKNVVFKRLKAKSENK----------------IGSVFGSEFLLKLYLAGAIGG 60

Query: 61 SAFYLAHHLFQASSSK 77
          SAFYLAHHLFQASSSK
Sbjct: 61 SAFYLAHHLFQASSSK 60

[Close]
BLAST of MELO3C034996 vs. NCBI nr
Match: KAA0062232.1 (RHOMBOID-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 59/76 (77.63%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAKREAVKIIRIGSVFGSEFLLKLYLAGAIGG 60
          MASDSFIDKNVVFKRLK KSENK                IGSVFGSEFLLKLYLAGAIGG
Sbjct: 1  MASDSFIDKNVVFKRLKPKSENK----------------IGSVFGSEFLLKLYLAGAIGG 60

Query: 61 SAFYLAHHLFQASSSK 77
          SAFYLAHHLFQASSSK
Sbjct: 61 SAFYLAHHLFQASSSK 60

[Close]
BLAST of MELO3C034996 vs. NCBI nr
Match: XP_008452017.1 (PREDICTED: RHOMBOID-like protein 12, mitochondrial [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-10
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK
Sbjct: 205 MNIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 243

[Close]
BLAST of MELO3C034996 vs. NCBI nr
Match: TYJ98948.1 (RHOMBOID-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IGSVFGSEFLLKLYLAGAIGGSAFYL HHLFQASSSK
Sbjct: 205 MNIGSVFGSEFLLKLYLAGAIGGSAFYLVHHLFQASSSK 243

[Close]
BLAST of MELO3C034996 vs. NCBI nr
Match: XP_004137444.1 (RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetical protein Csa_013374 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 9.5e-09
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IG+VFGSEFLLKLYLAGAIGGSAFYLAHHLFQA SSK
Sbjct: 205 MNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQALSSK 243

[Close]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match: A0A5A7UCH8 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00670 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAKREAVKIIRIGSVFGSEFLLKLYLAGAIGG 60
          MASDSFIDKNVVFKRLKAKSENK                IGSVFGSEFLLKLYLAGAIGG
Sbjct: 1  MASDSFIDKNVVFKRLKAKSENK----------------IGSVFGSEFLLKLYLAGAIGG 60

Query: 61 SAFYLAHHLFQASSSK 77
          SAFYLAHHLFQASSSK
Sbjct: 61 SAFYLAHHLFQASSSK 60

[Close]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match: A0A5A7V1Y4 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00360 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.4e-19
Identity = 59/76 (77.63%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAKREAVKIIRIGSVFGSEFLLKLYLAGAIGG 60
          MASDSFIDKNVVFKRLK KSENK                IGSVFGSEFLLKLYLAGAIGG
Sbjct: 1  MASDSFIDKNVVFKRLKPKSENK----------------IGSVFGSEFLLKLYLAGAIGG 60

Query: 61 SAFYLAHHLFQASSSK 77
          SAFYLAHHLFQASSSK
Sbjct: 61 SAFYLAHHLFQASSSK 60

[Close]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match: A0A1S3BSX2 (RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK
Sbjct: 205 MNIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 243

[Close]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match: A0A5D3BLA0 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001490 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IGSVFGSEFLLKLYLAGAIGGSAFYL HHLFQASSSK
Sbjct: 205 MNIGSVFGSEFLLKLYLAGAIGGSAFYLVHHLFQASSSK 243

[Close]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match: A0A0A0LTI7 (Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.6e-09
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 38  IRIGSVFGSEFLLKLYLAGAIGGSAFYLAHHLFQASSSK 77
           + IG+VFGSEFLLKLYLAGAIGGSAFYLAHHLFQA SSK
Sbjct: 205 MNIGNVFGSEFLLKLYLAGAIGGSAFYLAHHLFQALSSK 243

[Close]
BLAST of MELO3C034996 vs. TAIR 10
Match: AT1G18600.1 (RHOMBOID-like protein 12 )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 44  FGSEFLLKLYLAGAIGGSAFYLAHHLFQASSS 76
           FG +FLLKLYLAGA+GGS FYL HH + A++S
Sbjct: 208 FGPQFLLKLYLAGALGGSVFYLIHHAYMAATS 239

[Close]
BLAST of MELO3C034996 vs. TAIR 10
Match: AT5G46750.1 (ARF-GAP domain 9 )

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 20/31 (64.52%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          MA+++  DKNVVF++LK+KSENK+ FDC+AK
Sbjct: 1  MATENLTDKNVVFRKLKSKSENKVCFDCSAK 31

[Close]
BLAST of MELO3C034996 vs. TAIR 10
Match: AT2G35210.2 (root and pollen arfgap )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKI FDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C034996 vs. TAIR 10
Match: AT2G35210.1 (root and pollen arfgap )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKI FDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C034996 vs. TAIR 10
Match: AT4G17890.1 (ARF-GAP domain 8 )

HSP 1 Score: 45.8 bits (107), Expect = 1.8e-05
Identity = 18/30 (60.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 2  ASDSFIDKNVVFKRLKAKSENKIYFDCNAK 32
          ++D+  DKN+VF++LK+KSENK+ FDC+AK
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAK 34

The following BLAST results are available for this feature:
BLAST of MELO3C034996 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FZ812.3e-0568.75RHOMBOID-like protein 12, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL12... [more]
Q9FIQ06.6e-0564.52Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis t... [more]
O821712.5e-0470.97ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana ... [more]
Q8H1002.5e-0460.00Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis t... [more]
BLAST of MELO3C034996 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051345.13.5e-1978.95RHOMBOID-like protein 12 [Cucumis melo var. makuwa][more]
KAA0062232.11.3e-1877.63RHOMBOID-like protein 12 [Cucumis melo var. makuwa][more]
XP_008452017.18.6e-1094.87PREDICTED: RHOMBOID-like protein 12, mitochondrial [Cucumis melo][more]
TYJ98948.12.5e-0992.31RHOMBOID-like protein 12 [Cucumis melo var. makuwa][more]
XP_004137444.19.5e-0989.74RHOMBOID-like protein 12, mitochondrial [Cucumis sativus] >KGN64067.1 hypothetic... [more]
BLAST of MELO3C034996 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UCH81.7e-1978.95RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7V1Y46.4e-1977.63RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A1S3BSX24.2e-1094.87RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 ... [more]
A0A5D3BLA01.2e-0992.31RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0LTI74.6e-0989.74Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE... [more]
BLAST of MELO3C034996 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G18600.11.6e-0668.75RHOMBOID-like protein 12 [more]
AT5G46750.14.7e-0664.52ARF-GAP domain 9 [more]
AT2G35210.21.8e-0570.97root and pollen arfgap [more]
AT2G35210.11.8e-0570.97root and pollen arfgap [more]
AT4G17890.11.8e-0560.00ARF-GAP domain 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034996.1MELO3C034996.1mRNA