MELO3C034994 (gene) Melon (DHL92) v4

Overview
NameMELO3C034994
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionpseudouridine-5'-phosphate glycosidase isoform X1
Locationchr11: 13655201 .. 13659079 (+)
RNA-Seq ExpressionMELO3C034994
SyntenyMELO3C034994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTTCCCTCCCAAAACCCTCGATCCCTTCATCTCTATCTTCATCTCTCTCTATCTTCAACAGCCGCCCACTGCAACCGACGCAAGTACTCCACCGTCGGCCACCATAGCCACACAAACTCCACCATCGGCAACCATAGGCACATAAACTTCCGTCGCCAGCGACCATAGTCTCAATTTTTGGACGGCATCTCCAGACACTACGAGCTTCAGACGGTATCTCCAAATGCGACGGACTTCAGACAGCGACCTCGACGGGCTTTGGACGGTGAACCACAACCTTCTGACGGCGGCCACAGACTTTCAACGACGACCCACTACAGTTCGATCGCACCCACGGCCTTCTGACGACGACCCACGGCGACCCACTGCAGTTCGATCGTGCCCACGGCCTTCTGACGGCGACCCACGGCGACTCCGACCCACATCTTCACCTTCATCGCTGGTAAATCTCATCTCTTCTATGCATTTGCTACATTTAACGCTCTTTGAACTCTTCGGAGATATTGAATCTCTCTTTCTTTGTTCACTTGACACTTCATTTTTGGAGCGTTTGAAGGATTTTAATTTTAATAAACAACTATTATATTGTTTGTTTGTGTTAATATGTTAATATTTGTTGGAAAATGTTACAGTTGATCTAGCTGATAAATCCCATGAAGAGTATAATAGAAGTGTTTCAAACCCAAACAGCTCTTTATCAGGATTATTACCGCTGAGGAGAGACCATGCAATAGCTGAATGCTTTGAGCCTAAATTGCAGGCCAAAAACCAAACTTCAGCCTAATGGCTTGAGATTGAACTCAAAAGGCACGTCTATTTCTCAAGTAACAAACAACTTTTCACGTAGTTTGTAAATTATTTTGACGACTATGATATTGATTCAGATGCTACTATGGAGAAAAGTGGATTGTTTGATAGGAACTCTGGGAGAACTGAGAATCAGAAGTAGAATGGAACATTATCTGATAAAAACTTAGAGAAAACTAAGAGCCAGAATGAGAATGAAAAATCTGAAGAGGCTTCTGATTTGCTTCTTGACACTGCTACTGATCTAATGTTACCCATTGAAGTAATCTTTTACTCTTTCTATTGTTTTCAAGCTTTTTTTTTTTTTTTTGTAGCAATACAATCAAACTAAATATAGTGTCTTTCTTTAATATCCTGTCAAAAAACTTTGAAATCTCAATTTCAACTCCATGTATTTATTTTGTTTCTATTGAGTTTTTACTCTCACAAAATGTAGAATTGTATTGATAAATTAATAAGTTGTCTTGCACGCCAATTATCATGCCAATTCAATCTAGTGAACTAGTTTGCAGGCTCTGAGTATAAATCTTCCTAATGGAATTTTGGTTAAACTTTGAGGACTATGGACACTCACTGATATACTGAGAATATAATTTGTTGACGACATACTGGTGGACTCTGAAACTTCATGAAATTCAAGAGGTGCGTATGCCTTATTATACTACGTATTGTTATAGTTATTGAAGCATTTCTAGGTATTGTTATAGTTATTGTTAAATTTTTATCTATGAAGGTTTTTGAAGGCTTATTCGTGAGTTATCTTGCCACGTTTTTCTTGTAAATTGTATCTGCCTGCTTGTTTCAGCTATATCTGCATTTATATAGGGGGGTTTGCATATAAATTGGTATAGGGTGGCGATTGCATACACACTAGCTTAGCATAATTTAAAATACTGCAGTATTGTAGTTGTATTTAGAAATGACAGTTCTTTTCAAGGTAATTGTTCTAACTAATGTAGTTTAGAAATGTTGTATTTGGAAATGATAGTTCTTCTCAATTGCTGTATAAGTGAAAGATTAGAACACTGGAAACTTATACATCAAGAACTGTTGTCTTCTCTGCAAAGGAATTGAGTGATGGAACACCACCTTTTGGTATGAATTTCCTCTTCTATTTAGATTTTGATAAGGGGTACGTTCTGGAATTGAGTAACTCAATTCCTTTCTCTCTCTACTGCCTTTCTCTCTTTCAAGAAATTACAGTAAATCTTCTTACAAAATTCTCATATCCTTCCTCCTAAATTCTATTAGTATTTATACTAATCTTGCCAGCCTCTAACTAACTCACATGTGAGTGTTATTACAACTAACATAACAAACTAATGTAACAAACTCTAGCTGGTATAACTAACTTTTCCTTCTGCTGTAAACAAATCTAATTAGGGGTCTATCATTACTCCCCCCTTTCAGATTCACCTTGTCCTCAAGGTGTGTTTACAGCTTTCTTTCCTTTTTTTTTTTTTTGGTTTGTTATCGACAATTTTAGGGTTTAGTTTTCTTTCCTCTAACCTCCTTTTCTATCCCTTTCTGCCACGTCATCAGCATCACGGCAACATCTCCTTCTTTACGCAACTCTCCCGCTTTCCGTATCGCCTTCTCGGACAACCACTATTTGCCAGCATTTTCTTCCTCCTTCTCATCCACACGACTGCTGCCGTCTTCTTTTTTCATCGAAACCAGTCAACTTCCGGTGTCTTTTTTTTCCATCGAAACCAGTCACTTCCAGCGTCTCCGAACTGCAACTTTTTTTCACTTGGATCTTCGTTTTGGGTCTCGCCGGTAATTCTCGCCGATCTTCCACGATTTTCGATTTGTTTGCTAGAAATCGCCCGCGGCTAAGTTCTTCCCTCACTGATTGGAAAGGAAGTAACAATCTCTGTTTTAATCTCAACCAATCCTTGAATGCATCGTGTTCATCCTTCGACCGAGACCAATCTAATGTGGTTCCATCGAATTTGATTACAACAACGTTTACTCTCTCAGAATTGATCAGTTCATATTTTTGGAAATTCCGTTCGATCCAAAAAATAAATGAATCGAACTTCTTGCCGCTAAACCTCTGTAACTCTACCTTCTTGAATTTGTTTTGATCACTTATATCTTCTTCAATTCCTATCTTCTTTGTTTGTTCTTCGCCCACCTTCTCTTCAGTTTCGATTTCCTTCTTTTGTTCTTCGGTCTCGATTCTTTTCATAGGTGTACTTCCTCCTTCAACTATACTCTTCATCACTGGTAGATTCGTTGTGATTCTTTCACTCACTGTTTGTTCACTCACTATCAATTTTTCTTTCACCATGGTTTCAACGCATTGTAACAACAATTGTTGATTTTTTTCGGCTTGAATTCTTAACAGCCGGAGGCTCTTTGTTAAGGATCTCAGGTTTTCTTCAATTGCCGGAATTTTGCTTAATTCTTTCTTCATCCCAATCACTTCTTGTTCAAAGGCTTCCAGTTTTTCTTCAATTTGCGTTTGCTCCATTGTTGATTTCCTTCCCAAGATTCACCGCTCTGATACCAATTTGATGGAACACCACCTTTTGGTATGAATTTTCTCTTCTATTTAGATTTTGATAAGGGGTACATTCTGGAATTGAGTAACTCAATTCCTTTCTCTCTCTACTGCCTTTCTCTCTTTCAAGAAATTACAGTAAATCTTCTTACAAAATTCTCATATCCTTCCTCCTAAATTCTATTAGTATTTATACTAATCTTGCCAGCCTCTAACTAACTCACATGTGAGTGTTATTACAACTAACATAACAAACTAATGTAACAAACTCCAGCTGGTATAACTAACTTTTCCTTCTGCTGTAAACAAATCTAATTAGGGGTCTATCATTGAGTTACAGAGTTCTAAATATGATGCCACTCAAATATTTCTTCACATAGTCGAACAATCTTAAATGATAGTTGCTGCTCATTCCATTCTTCTATATATTTATTAATTTTTTATTGTCTTCCTCCGTAGATGCCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTGTTGTTCCAATTTCAAACGAGCATTCAGCTTCTGGAAGCTTAATTGAGAACGCAATATAA

mRNA sequence

TCATTTCCCTCCCAAAACCCTCGATCCCTTCATCTCTATCTTCATCTCTCTCTATCTTCAACAGCCGCCCACTGCAACCGACGCAAGTACTCCACCGTCGGCCACCATAGCCACACAAACTCCACCATCGGCAACCATAGGCACATAAACTTCCGTCGCCAGCGACCATAGTCTCAATTTTTGGACGGCATCTCCAGACACTACGAGCTTCAGACGGTATCTCCAAATGCGACGGACTTCAGACAGCGACCTCGACGGGCTTTGGACGGTGAACCACAACCTTCTGACGGCGGCCACAGACTTTCAACGACGACCCACTACAGTTCGATCGCACCCACGGCCTTCTGACGACGACCCACGGCGACCCACTGCAGTTCGATCGTGCCCACGGCCTTCTGACGGCGACCCACGGCGACTCCGACCCACATCTTCACCTTCATCGCTGAGCCAGAATGAGAATGAAAAATCTGAAGAGGCTTCTGATTTGCTTCTTGACACTGCTACTGATCTAATGTTACCCATTGAATTGTATTTAGAAATGACAGTTCTTTTCAAGATTAGAACACTGGAAACTTATACATCAAGAACTGTTGTCTTCTCTGCAAAGGAATTGAGTGATGGAACACCACCTTTTGGTATGAATTTCCTCTTCTATTTAGATTTTGATAAGGGCCGGAGGCTCTTTGTTAAGGATCTCAGGTTTTCTTCAATTGCCGGAATTTTGCTTAATTCTTTCTTCATCCCAATCACTTCTTGTTCAAAGGCTTCCAGTTTTTCTTCAATTTGCGTTTGCTCCATTGTTGATTTCCTTCCCAAGATTCACCGCTCTGATACCAATTTGATGGAACACCACCTTTTGATTTTGATAAGGGATGCCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTGTTGTTCCAATTTCAAACGAGCATTCAGCTTCTGGAAGCTTAATTGAGAACGCAATATAA

Coding sequence (CDS)

ATGCGACGGACTTCAGACAGCGACCTCGACGGGCTTTGGACGGTGAACCACAACCTTCTGACGGCGGCCACAGACTTTCAACGACGACCCACTACAGTTCGATCGCACCCACGGCCTTCTGACGACGACCCACGGCGACCCACTGCAGTTCGATCGTGCCCACGGCCTTCTGACGGCGACCCACGGCGACTCCGACCCACATCTTCACCTTCATCGCTGAGCCAGAATGAGAATGAAAAATCTGAAGAGGCTTCTGATTTGCTTCTTGACACTGCTACTGATCTAATGTTACCCATTGAATTGTATTTAGAAATGACAGTTCTTTTCAAGATTAGAACACTGGAAACTTATACATCAAGAACTGTTGTCTTCTCTGCAAAGGAATTGAGTGATGGAACACCACCTTTTGGTATGAATTTCCTCTTCTATTTAGATTTTGATAAGGGCCGGAGGCTCTTTGTTAAGGATCTCAGGTTTTCTTCAATTGCCGGAATTTTGCTTAATTCTTTCTTCATCCCAATCACTTCTTGTTCAAAGGCTTCCAGTTTTTCTTCAATTTGCGTTTGCTCCATTGTTGATTTCCTTCCCAAGATTCACCGCTCTGATACCAATTTGATGGAACACCACCTTTTGATTTTGATAAGGGATGCCAACATGAATCTTGAGCTTGGAAGTGGAATTCTGATTGTTGTTCCAATTTCAAACGAGCATTCAGCTTCTGGAAGCTTAATTGAGAACGCAATATAA

Protein sequence

MRRTSDSDLDGLWTVNHNLLTAATDFQRRPTTVRSHPRPSDDDPRRPTAVRSCPRPSDGDPRRLRPTSSPSSLSQNENEKSEEASDLLLDTATDLMLPIELYLEMTVLFKIRTLETYTSRTVVFSAKELSDGTPPFGMNFLFYLDFDKGRRLFVKDLRFSSIAGILLNSFFIPITSCSKASSFSSICVCSIVDFLPKIHRSDTNLMEHHLLILIRDANMNLELGSGILIVVPISNEHSASGSLIENAI
Homology
[Close]
BLAST of MELO3C034994 vs. NCBI nr
Match: XP_031736108.1 (uncharacterized protein LOC101217190 isoform X2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 216 DANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           DANMNLELGSG+LI VPI NEHSASGSLIENAI
Sbjct: 182 DANMNLELGSGVLIAVPIPNEHSASGSLIENAI 214

[Close]
BLAST of MELO3C034994 vs. NCBI nr
Match: XP_004139051.1 (uncharacterized protein LOC101217190 isoform X1 [Cucumis sativus] >XP_011660154.1 uncharacterized protein LOC101217190 isoform X1 [Cucumis sativus] >KGN66518.1 hypothetical protein Csa_007314 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-05
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 216 DANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           DANMNLELGSG+LI VPI NEHSASGSLIENAI
Sbjct: 250 DANMNLELGSGVLIAVPIPNEHSASGSLIENAI 282

[Close]
BLAST of MELO3C034994 vs. NCBI nr
Match: XP_038878447.1 (pseudouridine-5'-phosphate glycosidase [Benincasa hispida] >XP_038878448.1 pseudouridine-5'-phosphate glycosidase [Benincasa hispida] >XP_038878450.1 pseudouridine-5'-phosphate glycosidase [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-05
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 216 DANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           DANMNL LGSGILI VPI NEHSASGSLIENAI
Sbjct: 275 DANMNLGLGSGILIAVPIPNEHSASGSLIENAI 307

[Close]
BLAST of MELO3C034994 vs. NCBI nr
Match: XP_008450376.1 (PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X3 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 252 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

[Close]
BLAST of MELO3C034994 vs. NCBI nr
Match: XP_008450375.1 (PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X2 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 251 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 282

[Close]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match: A0A0A0LXQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-06
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 216 DANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           DANMNLELGSG+LI VPI NEHSASGSLIENAI
Sbjct: 250 DANMNLELGSGVLIAVPIPNEHSASGSLIENAI 282

[Close]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match: A0A5D3DW67 (Pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G001070 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 252 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

[Close]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match: A0A1S3BNH4 (pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 251 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 282

[Close]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match: A0A1S3BQ44 (pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 252 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

[Close]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match: A0A1S3BP55 (pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-04
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 217 ANMNLELGSGILIVVPISNEHSASGSLIENAI 249
           ANMNLELGSGILI VPI NEHSASGSLIE AI
Sbjct: 252 ANMNLELGSGILIAVPIPNEHSASGSLIEKAI 283

The following BLAST results are available for this feature:
BLAST of MELO3C034994 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C034994 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031736108.11.9e-0590.91uncharacterized protein LOC101217190 isoform X2 [Cucumis sativus][more]
XP_004139051.11.9e-0590.91uncharacterized protein LOC101217190 isoform X1 [Cucumis sativus] >XP_011660154.... [more]
XP_038878447.19.2e-0590.91pseudouridine-5'-phosphate glycosidase [Benincasa hispida] >XP_038878448.1 pseud... [more]
XP_008450376.13.5e-0490.63PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X3 [Cucumis melo][more]
XP_008450375.13.5e-0490.63PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X2 [Cucumis melo][more]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXQ49.0e-0690.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1[more]
A0A5D3DW671.7e-0490.63Pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BNH41.7e-0490.63pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3BQ441.7e-0490.63pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3BP551.7e-0490.63pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
BLAST of MELO3C034994 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C034994.1MELO3C034994.1mRNA