MELO3C034964 (gene) Melon (DHL92) v4

Overview


Name	MELO3C034964
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DDE Tnp4 domain-containing protein
Location	chr11: 23102723 .. 23103951 (-)
RNA-Seq Expression	MELO3C034964
Synteny	MELO3C034964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACTTGATTCAAGATAATCTGATGACAATTTTGATTATGACGAAGATGACAATGGTATTTGCATCCTTTTTACTTTATTCTACATGAACTTGCACAGGATACAATCTTCAAATAACCATGTAGAATCTCTGTACTGAGAGGACATGATTAAGTGATTGATTGTTTTGATTGTTTTAGGATGAAAAGAATTACATTAATAAGATTTCGTGAAGATTTAAAATCGAAGACAAATCTGAAATCATCTAGATATTTTACCGTTCAAGAAAAAGTTTCTATATTTTTATTAATCATACCTCATAATGAAAGCAATTGTATAGCAGCAGAAAAATTTCAACATTCGGGTCATAGTATTTCTTTAGCTTTTAACCTTGTTTTGAGGAAAGTTTGCAAGCTTGGTAAAGAAATTATTCGCCCACCCAATATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACCCTTTCTTTAAAGTAATGCGTTAATGTTTTGATTTATTTTTAGAAATATAATGTTTTGAAATATATTTGTGTTTTTTATTATCGTTTAGGATTGTACTAGTGCTACGGATGGCACTCATGTTGCTGCAAGTATTCCCCAAAATGAACAAATACCGTTTCGTGGAAGAAAAACTAACACAACATGTAATATAATATATGTTTGTTCATTAGATATGTTATTCACGTATGTCATATCTTGTTGGGAAGGATCAACCAATGATTCTCGCATACTTCCATAATGTATCAAGAATCCTAAGAATAAATTTCCTATACCTAAGAGAGGTAAATAATTATGTGTTTTTCAGAACTTTAATTCCATATTTGACTTTATGATAATTTTTTATTTGCTATATGCAGATCAATAATATCTTATCGATTCAAGATATGTTAGGATTTTTAGCACCATTTTGAGGTCAAAGATATGATTTACGAGATTTTAGAGAAAGGAAATATCGCCCTCGAGGTAGAGAAGAAGTGTTTAATTATCAACATTCTTCACTGCAAAATGTCATCAAACGTTGTTTTGGTGTGCTGAAGGCTTGATTTCCTACTCTTAAGCAAATGTCTTCTTACCCGATCAAGACACAAAAATATATACCGATAGCATGTTGCACAGTTCACAATTATATTAGATTGAATGATCGTCAAAATGATCTTTTCAATGACTTTAGCAATGAATTAATAATTGTTGAAGATACACATAATTTGCCAGCCAATTTGCAG

mRNA sequence

GGACTTGATTCAAGATAATCTGATGACAATTTTGATTATGACGAAGATGACAATGTTTGCAAGCTTGGTAAAGAAATTATTCGCCCACCCAATATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACCCTTTCTTTAAAGATTGTACTAGTGCTACGGATGGCACTCATGTTGCTGCAAGTATTCCCCAAAATGAACAAATACCGTTTCGTGGAAGAAAAACTAACACAACATGTAATATAATATATGTTTGTTCATTAGATATGTTATTCACGTATGTCATATCTTGTTGGGAAGGATCAACCAATGATTCTCGCATACTTCCATAATGTATCAAGAATCCTAAGAATAAATTTCCTATACCTAAGAGAGATCAATAATATCTTATCGATTCAAGATATGTTAGGATTTTTAGCACCATTTTGAGGTCAAAGATATGATTTACGAGATTTTAGAGAAAGGAAATATCGCCCTCGAGGTAGAGAAGAAGTGTTTAATTATCAACATTCTTCACTGCAAAATGTCATCAAACGTTGTTTTGGTGTGCTGAAGGCTTGATTTCCTACTCTTAAGCAAATGTCTTCTTACCCGATCAAGACACAAAAATATATACCGATAGCATGTTGCACAGTTCACAATTATATTAGATTGAATGATCGTCAAAATGATCTTTTCAATGACTTTAGCAATGAATTAATAATTGTTGAAGATACACATAATTTGCCAGCCAATTTGCAG

Coding sequence (CDS)

ATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACCCTTTCTTTAAAGATTGTACTAGTGCTACGGATGGCACTCATGTTGCTGCAAGTATTCCCCAAAATGAACAAATACCGTTTCGTGGAAGAAAAACTAACACAACATGTAATATAATATATGTTTGTTCATTAGATATGTTATTCACGTATGTCATATCTTGTTGGGAAGGATCAACCAATGATTCTCGCATACTTCCATAA

Protein sequence

MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLDMLFTYVISCWEGSTNDSRILP

Homology

[Close]

BLAST of MELO3C034964 vs. NCBI nr
Match: KAA0068176.1 (putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          MDTV MEIVSNSKYYP FKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 1  MDTVAMEIVSNSKYYPLFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGS NDSRIL
Sbjct: 61 MLFTYVMSGWEGSANDSRIL 80

[Close]

BLAST of MELO3C034964 vs. NCBI nr
Match: TYK06269.1 (protein ALP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1   MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
           MDTV  +IVSNSKYYPFFKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 55  MDTVATKIVSNSKYYPFFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 114

Query: 61  MLFTYVISCWEGSTNDSRIL 81
           MLFTYV+S WEGS NDSRIL
Sbjct: 115 MLFTYVMSGWEGSANDSRIL 134

[Close]

BLAST of MELO3C034964 vs. NCBI nr
Match: TYK21096.1 (protein ALP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.0e-30
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          M+TV  +IVSNSKYYPFFKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 1  MNTVATKIVSNSKYYPFFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGS NDSRIL
Sbjct: 61 MLFTYVMSGWEGSANDSRIL 80

[Close]

BLAST of MELO3C034964 vs. NCBI nr
Match: XP_016901856.1 (PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          MDT+PMEI+SNSKYYPFFKD   A D THV ASI QNEQI FRGRKTNTT NI+ VCS D
Sbjct: 1  MDTIPMEIISNSKYYPFFKDFIGAIDDTHVVASILQNEQILFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGSTND RIL
Sbjct: 61 MLFTYVMSGWEGSTNDFRIL 80

[Close]

BLAST of MELO3C034964 vs. NCBI nr
Match: KGN65306.2 (hypothetical protein Csa_017722, partial [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
           M T+PMEI+SNSKYYPFFKDC  A DGTHV  SIPQNEQIPFR RKTNTT NI++VCS D
Sbjct: 113 MYTIPMEIISNSKYYPFFKDCIGAIDGTHVPTSIPQNEQIPFRRRKTNTTWNIMWVCSFD 172

Query: 61  MLFTYVISCWE 72
           MLFTYV+S W+
Sbjct: 173 MLFTYVMSGWK 183

[Close]

BLAST of MELO3C034964 vs. ExPASy TrEMBL
Match: A0A5A7VNL5 (Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001450 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          MDTV MEIVSNSKYYP FKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 1  MDTVAMEIVSNSKYYPLFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGS NDSRIL
Sbjct: 61 MLFTYVMSGWEGSANDSRIL 80

[Close]

BLAST of MELO3C034964 vs. ExPASy TrEMBL
Match: A0A5D3C7F6 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00500 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.7e-31
Identity = 67/80 (83.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1   MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
           MDTV  +IVSNSKYYPFFKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 55  MDTVATKIVSNSKYYPFFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 114

Query: 61  MLFTYVISCWEGSTNDSRIL 81
           MLFTYV+S WEGS NDSRIL
Sbjct: 115 MLFTYVMSGWEGSANDSRIL 134

[Close]

BLAST of MELO3C034964 vs. ExPASy TrEMBL
Match: A0A5D3DC11 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00620 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          M+TV  +IVSNSKYYPFFKDC  A DGTHVAASIPQNEQIPFRGRKTNTT NI+ VCS D
Sbjct: 1  MNTVATKIVSNSKYYPFFKDCIGAIDGTHVAASIPQNEQIPFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGS NDSRIL
Sbjct: 61 MLFTYVMSGWEGSANDSRIL 80

[Close]

BLAST of MELO3C034964 vs. ExPASy TrEMBL
Match: A0A1S4E0U9 (uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
          MDT+PMEI+SNSKYYPFFKD   A D THV ASI QNEQI FRGRKTNTT NI+ VCS D
Sbjct: 1  MDTIPMEIISNSKYYPFFKDFIGAIDDTHVVASILQNEQILFRGRKTNTTWNIMCVCSFD 60

Query: 61 MLFTYVISCWEGSTNDSRIL 81
          MLFTYV+S WEGSTND RIL
Sbjct: 61 MLFTYVMSGWEGSTNDFRIL 80

[Close]

BLAST of MELO3C034964 vs. ExPASy TrEMBL
Match: A0A4Y7J673 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_014815 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.2e-21
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   MDTVPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLD 60
           MD VP EI++N K+YP+F DC  A DGTH++A +P ++QIPFRGRK   T NI+  CS D
Sbjct: 337 MDEVPPEIMTNPKFYPWFVDCVGAIDGTHISACVPASKQIPFRGRKAQITQNIMCACSFD 396

Query: 61  MLFTYVISCWEGSTNDSRIL 81
           MLFT+V + WEG+ ND+R+L
Sbjct: 397 MLFTFVYTGWEGTANDARVL 416

[Close]

BLAST of MELO3C034964 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-16
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 4  VPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLDMLF 63
          VP +I  +++ YP+FKDC  A D TH+ A + Q +   FR RK + + N++  C+ D+ F
Sbjct: 8  VPRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEF 67

Query: 64 TYVISCWEGSTNDSRIL 81
           YV+S WEGS +DS++L
Sbjct: 68 MYVLSGWEGSAHDSKVL 84

[Close]

BLAST of MELO3C034964 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 26/77 (33.77%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 4   VPMEIVSNSKYYPFFKDCTSATDGTHVAASIPQNEQIPFRGRKTNTTCNIIYVCSLDMLF 63
           +P  +  + +Y+P+F     A DGTHV   +  + Q  +  R  N + NI+ +C L MLF
Sbjct: 159 IPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLF 218

Query: 64  TYVISCWEGSTNDSRIL 81
           TY+ +   GS  D+ +L
Sbjct: 219 TYIWNGAPGSCYDTAVL 235

The following BLAST results are available for this feature:

BLAST of MELO3C034964 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C034964 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068176.1	5.5e-31	85.00	putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK06269.1	1.6e-30	83.75	protein ALP1-like [Cucumis melo var. makuwa]	[more]
TYK21096.1	6.0e-30	82.50	protein ALP1-like [Cucumis melo var. makuwa]	[more]
XP_016901856.1	2.1e-27	78.75	PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo]	[more]
KGN65306.2	1.7e-24	77.46	hypothetical protein Csa_017722, partial [Cucumis sativus]	[more]

BLAST of MELO3C034964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VNL5	2.6e-31	85.00	Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3C7F6	7.7e-31	83.75	Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00...	[more]
A0A5D3DC11	2.9e-30	82.50	Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00...	[more]
A0A1S4E0U9	1.0e-27	78.75	uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=...	[more]
A0A4Y7J673	4.2e-21	57.50	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_014815 PE=3 SV=1	[more]

BLAST of MELO3C034964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	6.9e-16	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G43722.1	1.6e-09	33.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 26..80 e-value: 5.5E-7 score: 29.4
None	No IPR available	PANTHER	PTHR22930:SF212	NUCLEASE HARBI1 ISOFORM X1-RELATED	coord: 10..77
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 10..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034964.1	MELO3C034964.1	mRNA